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Concurrent visual encounter sampling validates eDNA selectivity and sensitivity for the endangered wood turtle (Glyptemys insculpta).

Akre TS, Parker LD, Ruther E, Maldonado JE, Lemmon L, McInerney NR.

PLoS One. 2019 Apr 24;14(4):e0215586. doi: 10.1371/journal.pone.0215586. eCollection 2019.


Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations.

Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS.

G3 (Bethesda). 2019 Jun 5;9(6):1785-1793. doi: 10.1534/g3.119.400084.


Brain MRI in Children with Mild Traumatic Brain Injury and Persistent Symptoms in Both Sports- and Non-sports-related Concussion.

Torres AR, Shaikh ZI, Chavez W, Maldonado JE.

Cureus. 2019 Jan 22;11(1):e3937. doi: 10.7759/cureus.3937.


High genetic diversity and distinct ancient lineage of Asiatic black bears revealed by non-invasive surveys in the Annapurna Conservation Area, Nepal.

Kadariya R, Shimozuru M, Maldonado JE, Moustafa MAM, Sashika M, Tsubota T.

PLoS One. 2018 Dec 5;13(12):e0207662. doi: 10.1371/journal.pone.0207662. eCollection 2018.


A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling.

Gutiérrez EE, Helgen KM, McDonough MM, Bauer F, Hawkins MTR, Escobedo-Morales LA, Patterson BD, Maldonado JE.

Zookeys. 2017 Sep 14;(697):87-131. doi: 10.3897/zookeys.697.15124. eCollection 2017.


Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus).

Campana MG, Parker LD, Hawkins MT, Young HS, Helgen KM, Szykman Gunther M, Woodroffe R, Maldonado JE, Fleischer RC.

BMC Genomics. 2016 Dec 9;17(1):1013.


Integrating archaeology and ancient DNA analysis to address invasive species colonization in the Gulf of Alaska.

West C, Hofman CA, Ebbert S, Martin J, Shirazi S, Dunning S, Maldonado JE.

Conserv Biol. 2017 Oct;31(5):1163-1172. doi: 10.1111/cobi.12865. Epub 2017 May 15.


Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimens.

Hawkins MT, Leonard JA, Helgen KM, McDonough MM, Rockwood LL, Maldonado JE.

BMC Evol Biol. 2016 Apr 14;16:80. doi: 10.1186/s12862-016-0650-z.


Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis).

Funk WC, Lovich RE, Hohenlohe PA, Hofman CA, Morrison SA, Sillett TS, Ghalambor CK, Maldonado JE, Rick TC, Day MD, Polato NR, Fitzpatrick SW, Coonan TJ, Crooks KR, Dillon A, Garcelon DK, King JL, Boser CL, Gould N, Andelt WF.

Mol Ecol. 2016 May;25(10):2176-94. doi: 10.1111/mec.13605. Epub 2016 Apr 5.


Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture.

Campana MG, Hawkins MT, Henson LH, Stewardson K, Young HS, Card LR, Lock J, Agwanda B, Brinkerhoff J, Gaff HD, Helgen KM, Maldonado JE, McShea WJ, Fleischer RC.

Mol Ecol Resour. 2016 Sep;16(5):1224-39. doi: 10.1111/1755-0998.12524. Epub 2016 Apr 4.


Phylogeny, biogeography and systematic revision of plain long-nosed squirrels (genus Dremomys, Nannosciurinae).

Hawkins MTR, Helgen KM, Maldonado JE, Rockwood LL, Tsuchiya MTN, Leonard JA.

Mol Phylogenet Evol. 2016 Jan;94(Pt B):752-764. doi: 10.1016/j.ympev.2015.10.023. Epub 2015 Oct 31.


Molecular Phylogeny Supports Repeated Adaptation to Burrowing within Small-Eared Shrews Genus of Cryptotis (Eulipotyphla, Soricidae).

He K, Woodman N, Boaglio S, Roberts M, Supekar S, Maldonado JE.

PLoS One. 2015 Oct 21;10(10):e0140280. doi: 10.1371/journal.pone.0140280. eCollection 2015.


Phylogeography of the Golden Jackal (Canis aureus) in India.

Yumnam B, Negi T, Maldonado JE, Fleischer RC, Jhala YV.

PLoS One. 2015 Sep 28;10(9):e0138497. doi: 10.1371/journal.pone.0138497. eCollection 2015.


Population Structure of mtDNA Variation due to Pleistocene Fluctuations in the South American Maned Wolf (Chrysocyon brachyurus, Illiger, 1815): Management Units for Conservation.

González S, Cosse M, Franco Mdel R, Emmons L, Vynne C, Duarte JM, Beccacesi MD, Maldonado JE.

J Hered. 2015;106 Suppl 1:459-68. doi: 10.1093/jhered/esv043.


In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA.

Hawkins MT, Hofman CA, Callicrate T, McDonough MM, Tsuchiya MT, Gutiérrez EE, Helgen KM, Maldonado JE.

Mol Ecol Resour. 2016 Sep;16(5):1173-88. doi: 10.1111/1755-0998.12448. Epub 2015 Aug 24.


Conservation archaeogenomics: ancient DNA and biodiversity in the Anthropocene.

Hofman CA, Rick TC, Fleischer RC, Maldonado JE.

Trends Ecol Evol. 2015 Sep;30(9):540-9. doi: 10.1016/j.tree.2015.06.008. Epub 2015 Jul 11. Review.


The Taxonomic Status of Mazama bricenii and the Significance of the Táchira Depression for Mammalian Endemism in the Cordillera de Mérida, Venezuela.

Gutiérrez EE, Maldonado JE, Radosavljevic A, Molinari J, Patterson BD, Martínez-C JM, Rutter AR, Hawkins MT, Garcia FJ, Helgen KM.

PLoS One. 2015 Jun 29;10(6):e0129113. doi: 10.1371/journal.pone.0129113. eCollection 2015.


Genetic Variation, Structure, and Gene Flow in a Sloth Bear (Melursus ursinus) Meta-Population in the Satpura-Maikal Landscape of Central India.

Dutta T, Sharma S, Maldonado JE, Panwar HS, Seidensticker J.

PLoS One. 2015 May 6;10(5):e0123384. doi: 10.1371/journal.pone.0123384. eCollection 2015.


Mitochondrial genomes suggest rapid evolution of dwarf California Channel Islands foxes (Urocyon littoralis).

Hofman CA, Rick TC, Hawkins MT, Funk WC, Ralls K, Boser CL, Collins PW, Coonan T, King JL, Morrison SA, Newsome SD, Sillett TS, Fleischer RC, Maldonado JE.

PLoS One. 2015 Feb 25;10(2):e0118240. doi: 10.1371/journal.pone.0118240. eCollection 2015.


Prioritizing tiger conservation through landscape genetics and habitat linkages.

Yumnam B, Jhala YV, Qureshi Q, Maldonado JE, Gopal R, Saini S, Srinivas Y, Fleischer RC.

PLoS One. 2014 Nov 13;9(11):e111207. doi: 10.1371/journal.pone.0111207. eCollection 2014.


Using genetic profiles of African forest elephants to infer population structure, movements, and habitat use in a conservation and development landscape in Gabon.

Eggert LS, Buij R, Lee ME, Campbell P, Dallmeier F, Fleischer RC, Alonso A, Maldonado JE.

Conserv Biol. 2014 Feb;28(1):107-18. doi: 10.1111/cobi.12161. Epub 2013 Nov 1.


Cryptic population structuring and the role of the Isthmus of Tehuantepec as a gene flow barrier in the critically endangered Central American River Turtle.

González-Porter GP, Maldonado JE, Flores-Villela O, Vogt RC, Janke A, Fleischer RC, Hailer F.

PLoS One. 2013 Sep 25;8(9):e71668. doi: 10.1371/journal.pone.0071668. eCollection 2013.


Gene flow and demographic history of leopards (Panthera pardus) in the central Indian highlands.

Dutta T, Sharma S, Maldonado JE, Wood TC, Panwar HS, Seidensticker J.

Evol Appl. 2013 Sep;6(6):949-59. doi: 10.1111/eva.12078. Epub 2013 Jun 6.


Taxonomic revision of the olingos (Bassaricyon), with description of a new species, the Olinguito.

Helgen KM, Pinto CM, Kays R, Helgen LE, Tsuchiya MT, Quinn A, Wilson DE, Maldonado JE.

Zookeys. 2013 Aug 15;(324):1-83. doi: 10.3897/zookeys.324.5827. eCollection 2013.


Forest corridors maintain historical gene flow in a tiger metapopulation in the highlands of central India.

Sharma S, Dutta T, Maldonado JE, Wood TC, Panwar HS, Seidensticker J.

Proc Biol Sci. 2013 Jul 31;280(1767):20131506. doi: 10.1098/rspb.2013.1506. Print 2013 Sep 22.


Conservation outside protected areas and the effect of human-dominated landscapes on stress hormones in Savannah elephants.

Ahlering MA, Maldonado JE, Eggert LS, Fleischer RC, Western D, Brown JL.

Conserv Biol. 2013 Jun;27(3):569-75. doi: 10.1111/cobi.12061.


High levels of polymorphism found through cross-amplification of microsatellite loci in a Ctenomys pearsoni (Rodentia, Ctenomyidae) population.

Mannise N, González S, Maldonado JE, Izquierdo G, Francescoli G, Cosse M.

Genet Mol Res. 2013 Apr 2;12(2):887-91. doi: 10.4238/2013.April.2.5.


A minimally invasive method for gender determination in the prehensile-tailed porcupine (Coendou prehensilis).

Woc-Colburn AM, Murray S, Lock J, Dragoo JW, Guglielmo D, Maldonado JE.

Zoo Biol. 2013 Jul-Aug;32(4):463-6. doi: 10.1002/zoo.21063. Epub 2013 Feb 27.


Spatial genetic analysis reveals high connectivity of tiger (Panthera tigris) populations in the Satpura-Maikal landscape of Central India.

Sharma S, Dutta T, Maldonado JE, Wood TC, Panwar HS, Seidensticker J.

Ecol Evol. 2012 Jan;3(1):48-60. doi: 10.1002/ece3.432. Epub 2012 Nov 29.


Identifying source populations and genetic structure for savannah elephants in human-dominated landscapes and protected areas in the Kenya-Tanzania borderlands.

Ahlering MA, Eggert LS, Western D, Estes A, Munishi L, Fleischer R, Roberts M, Maldonado JE.

PLoS One. 2012;7(12):e52288. doi: 10.1371/journal.pone.0052288. Epub 2012 Dec 26.


Reconstructing the evolutionary history of an endangered subspecies across the changing landscape of the Great Central Valley of California.

Matocq MD, Kelly PA, Phillips SE, Maldonado JE.

Mol Ecol. 2012 Dec;21(24):5918-33. doi: 10.1111/mec.12079. Epub 2012 Oct 26.


Kinship shapes affiliative social networks but not aggression in ring-tailed coatis.

Hirsch BT, Stanton MA, Maldonado JE.

PLoS One. 2012;7(5):e37301. doi: 10.1371/journal.pone.0037301. Epub 2012 May 18.


Inbreeding avoidance influences the viability of reintroduced populations of African wild dogs (Lycaon pictus).

Becker PA, Miller PS, Gunther MS, Somers MJ, Wildt DE, Maldonado JE.

PLoS One. 2012;7(5):e37181. doi: 10.1371/journal.pone.0037181. Epub 2012 May 16.


Permanent Genetic Resources added to Molecular Ecology Resources Database 1 April 2010 - 31 May 2010.

Molecular Ecology Resources Primer Development Consortium, Andree K, Axtner J, Bagley MJ, Barlow EJ, Beebee TJ, Bennetzen JL, Bermingham E, Boisselier-Dubayle MC, Bozarth CA, Brooks CP, Brown RP, Catanese G, Cavers S, Ceron-Souza I, Chak ST, Chan MN, Charles-Dominique P, Chen CY, Chen JD, Chinchilla L, DA Silva D, Dafreville S, Daunt F, Delatte H, Dorge T, Duncan N, Durand JD, Duvernell D, Estep M, Fan S, Fattahi R, Villela OF, Fong Y, Fréville H, Funes V, Gallardo-Escarate C, Ganeshaiah KN, Ghaffari MR, Girod C, Gomez-Moliner BJ, Gonzalez-Porter GP, Gosa A, Govers F, Guérin F, Guindo D, Hailer F, Haye PA, Hoelmer KA, Hofmann S, Hong Y, Hu C, Huang SW, Humeau L, Infante C, Jackson SA, Jacobsen E, Jowkar A, Kafi M, Kermani MJ, Kim H, Kim KS, Kim MY, Knibb W, Koita OA, Korpelainen H, Lambourdiere J, Lasso E, Leblois R, Lee H, Lee S, Leung FC, Leung KM, Li C, Li Y, Lieckfeldt D, Lizana M, Loughry WJ, Luo P, Madeira MJ, Mahmoodi P, Maldonado JE, Mardi M, Mendes O, Miehe G, Muth P, Nacci D, Naveen Kumar L, Ng WC, Pailler T, Parzies HK, Perez L, Pfunder M, Pietiläinen M, Pirseyedi SM, Porta D, Porta J, Porta JM, Quilici S, Rakotoarivelo FP, Ramesha BT, Ravikanth G, Riéra B, Risterucci AM, Roberts DA, Samadi S, Sarasola-Puente V, Sarrazin E, Sarthou C, Schmidt A, Segovia NI, Shen KN, Simiand C, Sman MH, Solhoy T, Sommer S, Sumangala RC, Taubert R, Tejangkura T, Telford A, Testa A, Tollon-Cordet C, Tzeng WN, Uma Shaanker R, Van Der Lee TA, VAN Mourik TA, Vasudeva R, Wai TC, Wang RL, Welch ME, Weltzien E, Whitehead A, Woodard A, Xia J, Zeinolabedini M, Zhang L.

Mol Ecol Resour. 2010 Nov;10(6):1098-105. doi: 10.1111/j.1755-0998.2010.02898.x.


Splenic autoimplantation in omentum and stomach, hematoimmunological follow-up and B-cell repertoire in the graft.

Alvarez FA, Colombres GA, Viqueira A, Maldonado JE, Alvarellos E, Sambuelli RH, Alvarellos T.

Acta Gastroenterol Latinoam. 2010 Dec;40(4):339-46.


Familiarity breeds progeny: sociality increases reproductive success in adult male ring-tailed coatis (Nasua nasua).

Hirsch BT, Maldonado JE.

Mol Ecol. 2011 Jan;20(2):409-19. doi: 10.1111/j.1365-294X.2010.04940.x. Epub 2010 Nov 18.


Nuclear copies of mitochondrial genes: another problem for ancient DNA.

den Tex RJ, Maldonado JE, Thorington R, Leonard JA.

Genetica. 2010 Oct;138(9-10):979-84. doi: 10.1007/s10709-010-9481-9. Epub 2010 Aug 11.


In utero drugs of abuse exposure testing for newborn twins.

Wang P, Molina CP, Maldonado JE, Bernard DW.

J Clin Pathol. 2010 Mar;63(3):259-61. doi: 10.1136/jcp.2009.067595.


Major histocompatibility complex variation and evolution at a single, expressed DQA locus in two genera of elephants.

Archie EA, Henry T, Maldonado JE, Moss CJ, Poole JH, Pearson VR, Murray S, Alberts SC, Fleischer RC.

Immunogenetics. 2010 Feb;62(2):85-100. doi: 10.1007/s00251-009-0413-8.


Speciation dynamics in the SE Asian tropics: Putting a time perspective on the phylogeny and biogeography of Sundaland tree squirrels, Sundasciurus.

den Tex RJ, Thorington R, Maldonado JE, Leonard JA.

Mol Phylogenet Evol. 2010 May;55(2):711-20. doi: 10.1016/j.ympev.2009.12.023. Epub 2009 Dec 28.


Identification of the endangered small red brocket deer (Mazama bororo) using noninvasive genetic techniques (Mammalia; Cervidae).

González S, Maldonado JE, Ortega J, Talarico AC, Bidegaray-Batista L, Garcia JE, Duarte JM.

Mol Ecol Resour. 2009 May;9(3):754-8. doi: 10.1111/j.1755-0998.2008.02390.x. Epub 2009 Jan 22.


The surprising evolutionary history of South American deer.

Duarte JM, González S, Maldonado JE.

Mol Phylogenet Evol. 2008 Oct;49(1):17-22. doi: 10.1016/j.ympev.2008.07.009. Epub 2008 Jul 18.


Fine-scale population genetic structure in a fission-fusion society.

Archie EA, Maldonado JE, Hollister-Smith JA, Poole JH, Moss CJ, Fleischer RC, Alberts SC.

Mol Ecol. 2008 Jun;17(11):2666-79. doi: 10.1111/j.1365-294X.2008.03797.x. Epub 2008 May 5.


Behavioural inbreeding avoidance in wild African elephants.

Archie EA, Hollister-Smith JA, Poole JH, Lee PC, Moss CJ, Maldonado JE, Fleischer RC, Alberts SC.

Mol Ecol. 2007 Oct;16(19):4138-48. Epub 2007 Sep 4.


Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange.

Koepfli KP, Gompper ME, Eizirik E, Ho CC, Linden L, Maldonado JE, Wayne RK.

Mol Phylogenet Evol. 2007 Jun;43(3):1076-95. Epub 2006 Oct 11.


Assessing reliability of microsatellite genotypes from kit fox faecal samples using genetic and GIS analyses.

Smith DA, Ralls K, Hurt A, Adams B, Parker M, Maldonado JE.

Mol Ecol. 2006 Feb;15(2):387-406.


Nucleic acid isolation from ecological samples--animal scat and other associated materials.

Eggert LS, Maldonado JE, Fleischer RC.

Methods Enzymol. 2005;395:73-87.


Obstacles to health information for all.

Cuellar-Montoya Z, Maldonado JE, Moncayo A.

Lancet. 2004 Nov 13-19;364(9447):1755-6. No abstract available.


Ancient wolf lineages in India.

Sharma DK, Maldonado JE, Jhala YV, Fleischer RC.

Proc Biol Sci. 2004 Feb 7;271 Suppl 3:S1-4.

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