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Items: 44

1.

Panel sequencing of 264 candidate susceptibility genes and segregation analysis in a cohort of non-BRCA1, non-BRCA2 breast cancer families.

Li J, Li H, Makunin I; kConFab Investigators, Thompson BA, Tao K, Young EL, Lopez J, Camp NJ, Tavtigian SV, John EM, Andrulis IL, Khanna KK, Goldgar D, Chenevix-Trench G.

Breast Cancer Res Treat. 2017 Dec;166(3):937-949. doi: 10.1007/s10549-017-4469-0. Epub 2017 Aug 24.

PMID:
28840378
2.

Targeted massively parallel sequencing of a panel of putative breast cancer susceptibility genes in a large cohort of multiple-case breast and ovarian cancer families.

Li J, Meeks H, Feng BJ, Healey S, Thorne H, Makunin I, Ellis J; kConFab Investigators, Campbell I, Southey M, Mitchell G, Clouston D, Kirk J, Goldgar D, Chenevix-Trench G.

J Med Genet. 2016 Jan;53(1):34-42. doi: 10.1136/jmedgenet-2015-103452. Epub 2015 Nov 3.

3.

Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.

Afgan E, Sloggett C, Goonasekera N, Makunin I, Benson D, Crowe M, Gladman S, Kowsar Y, Pheasant M, Horst R, Lonie A.

PLoS One. 2015 Oct 26;10(10):e0140829. doi: 10.1371/journal.pone.0140829. eCollection 2015.

4.

Underreplicated regions in Drosophila melanogaster are enriched with fast-evolving genes and highly conserved noncoding sequences.

Makunin IV, Kolesnikova TD, Andreyenkova NG.

Genome Biol Evol. 2014 Jul 24;6(8):2050-60. doi: 10.1093/gbe/evu156.

5.

Rare mutations in RINT1 predispose carriers to breast and Lynch syndrome-spectrum cancers.

Park DJ, Tao K, Le Calvez-Kelm F, Nguyen-Dumont T, Robinot N, Hammet F, Odefrey F, Tsimiklis H, Teo ZL, Thingholm LB, Young EL, Voegele C, Lonie A, Pope BJ, Roane TC, Bell R, Hu H, Shankaracharya, Huff CD, Ellis J, Li J, Makunin IV, John EM, Andrulis IL, Terry MB, Daly M, Buys SS, Snyder C, Lynch HT, Devilee P, Giles GG, Hopper JL, Feng BJ, Lesueur F, Tavtigian SV, Southey MC, Goldgar DE.

Cancer Discov. 2014 Jul;4(7):804-15. doi: 10.1158/2159-8290.CD-14-0212. Epub 2014 May 2.

6.

Late replication domains are evolutionary conserved in the Drosophila genome.

Andreyenkova NG, Kolesnikova TD, Makunin IV, Pokholkova GV, Boldyreva LV, Zykova TY, Zhimulev IF, Belyaeva ES.

PLoS One. 2013 Dec 31;8(12):e83319. doi: 10.1371/journal.pone.0083319. eCollection 2013.

7.

Comparison of ultra-conserved elements in drosophilids and vertebrates.

Makunin IV, Shloma VV, Stephen SJ, Pheasant M, Belyakin SN.

PLoS One. 2013 Dec 13;8(12):e82362. doi: 10.1371/journal.pone.0082362. eCollection 2013.

8.

[Identification and molecular genetic characterization of the polytene chromosome interbands in Drosophila melanogaster].

Vatolina TIu, Demakov SA, Semeshin VF, Makunin IV, Babenko VN, Beliaeva ES, Zhimulev IF.

Genetika. 2011 May;47(5):597-609. Russian.

PMID:
21786665
9.

[Phylogenetic analysis of the rapidly evolving SuUR gene in insects].

Iurlova AA, Makunin IV, Zhimulev IF.

Genetika. 2010 Sep;46(9):1272-5. Russian.

PMID:
21061633
10.

[LTR retrotransposons as a source of promoters in the Drosophila genome].

Makunin IV, Iurlova AA.

Genetika. 2010 Sep;46(9):1202-4. Russian.

PMID:
21061618
11.

Identification of conserved Drosophila-specific euchromatin-restricted non-coding sequence motifs.

Jung CH, Makunin IV, Mattick JS.

Genomics. 2010 Sep;96(3):154-66. doi: 10.1016/j.ygeno.2010.05.006. Epub 2010 Jun 4.

12.

Paucity and preferential suppression of transgenes in late replication domains of the D. melanogaster genome.

Babenko VN, Makunin IV, Brusentsova IV, Belyaeva ES, Maksimov DA, Belyakin SN, Maroy P, Vasil'eva LA, Zhimulev IF.

BMC Genomics. 2010 May 21;11:318. doi: 10.1186/1471-2164-11-318.

13.

Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data.

Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS.

BMC Genomics. 2010 Feb 1;11:77. doi: 10.1186/1471-2164-11-77.

14.

Conservation of domain structure in a fast-evolving heterochromatic SUUR protein in drosophilids.

Yurlova AA, Makunin IV, Kolesnikova TD, Posukh OV, Belyaeva ES, Zhimulev IF.

Genetics. 2009 Sep;183(1):119-29. doi: 10.1534/genetics.109.104844. Epub 2009 Jul 13.

15.

An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.

Soldà G, Makunin IV, Sezerman OU, Corradin A, Corti G, Guffanti A.

Brief Bioinform. 2009 Sep;10(5):475-89. doi: 10.1093/bib/bbp022. Epub 2009 Apr 21. Review.

PMID:
19383843
16.

Maintenance of transposon-free regions throughout vertebrate evolution.

Simons C, Makunin IV, Pheasant M, Mattick JS.

BMC Genomics. 2007 Dec 20;8:470.

17.

Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock.

Stephen S, Pheasant M, Makunin IV, Mattick JS.

Mol Biol Evol. 2008 Feb;25(2):402-8. Epub 2007 Dec 3.

PMID:
18056681
18.

Orthologous microRNA genes are located in cancer-associated genomic regions in human and mouse.

Makunin IV, Pheasant M, Simons C, Mattick JS.

PLoS One. 2007 Nov 7;2(11):e1133.

19.

[Contribution of the SuUR gene to the organization of epigenetically repressed regions of Drosophila melanogaster chromosomes].

Kolesnikova TD, Andreeva EN, Pindiurin AV, Anan'ko NG, Beliakin SN, Shloma VV, Iurlova AA, Makunin IV, Pokholkova GV, Volkova EI, Zarutskaia EA, Kokoza EB, Seneshin VF, Beliaeva ES, Zhimulev IF.

Genetika. 2006 Aug;42(8):1013-28. Review. Russian.

PMID:
17025152
20.

Non-coding RNA.

Mattick JS, Makunin IV.

Hum Mol Genet. 2006 Apr 15;15 Spec No 1:R17-29. Review.

PMID:
16651366
21.

Transposon-free regions in mammalian genomes.

Simons C, Pheasant M, Makunin IV, Mattick JS.

Genome Res. 2006 Feb;16(2):164-72. Epub 2005 Dec 19.

22.

Functional dissection of the Suppressor of UnderReplication protein of Drosophila melanogaster: identification of domains influencing chromosome binding and DNA replication.

Kolesnikova TD, Makunin IV, Volkova EI, Pirrotta V, Belyaeva ES, Zhimulev IF.

Genetica. 2005 Jul;124(2-3):187-200.

PMID:
16134332
23.

Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories.

Belyakin SN, Christophides GK, Alekseyenko AA, Kriventseva EV, Belyaeva ES, Nanayev RA, Makunin IV, Kafatos FC, Zhimulev IF.

Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8269-74. Epub 2005 May 31.

24.

Small regulatory RNAs in mammals.

Mattick JS, Makunin IV.

Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R121-32. Review.

PMID:
15809264
25.

Ultraconserved elements in the human genome.

Bejerano G, Pheasant M, Makunin I, Stephen S, Kent WJ, Mattick JS, Haussler D.

Science. 2004 May 28;304(5675):1321-5. Epub 2004 May 6.

26.

Ectopic expression of the Suppressor of Underreplication gene inhibits endocycles but not the mitotic cell cycle in Drosophila melanogaster.

Volkova EI, Yurlova AA, Kolesnikova TD, Makunin IV, Zhimulev IF.

Mol Genet Genomics. 2003 Dec;270(5):387-93. Epub 2003 Sep 24.

PMID:
14508681
27.

Intercalary heterochromatin in Drosophila melanogaster polytene chromosomes and the problem of genetic silencing.

Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Semeshin VF, Alekseyenko AA, Belyakin SN, Volkova EI, Koryakov DE, Andreyeva EN, Demakova OV, Kotlikova IV, Kolesnikova TD, Boldyreva LV, Nanayev RA.

Genetica. 2003 Mar;117(2-3):259-70.

PMID:
12723705
28.

Influence of the SuUR gene on intercalary heterochromatin in Drosophila melanogaster polytene chromosomes.

Zhimulev IF, Belyaeva ES, Makunin IV, Pirrotta V, Volkova EI, Alekseyenko AA, Andreyeva EN, Makarevich GF, Boldyreva LV, Nanayev RA, Demakova OV.

Chromosoma. 2003 Mar;111(6):377-98. Epub 2002 Nov 28.

PMID:
12644953
29.
30.

Microdissection and sequence analysis of pericentric heterochromatin from the Drosophila melanogastermutant Suppressor of Underreplication.

Moshkin YM, Belyakin SN, Rubtsov NB, Kokoza EB, Alekseyenko AA, Volkova EI, Belyaeva ES, Makunin IV, Spierer P, Zhimulev IF.

Chromosoma. 2002 Jul;111(2):114-25. Epub 2002 Apr 16.

PMID:
12111334
31.

The Drosophila suppressor of underreplication protein binds to late-replicating regions of polytene chromosomes.

Makunin IV, Volkova EI, Belyaeva ES, Nabirochkina EN, Pirrotta V, Zhimulev IF.

Genetics. 2002 Mar;160(3):1023-34.

32.

[Effect of four doses of the Su(UR)ES gene on intercalary heterochromatin in Drosophila melanogaster].

Zhimulev IF, Makunin IV, Volkova EI, Pirrotta V, Beliaeva ES.

Genetika. 2000 Aug;36(8):1061-70. Russian.

PMID:
11033777
33.

The transposon A(R)4-24P[white, rosy] in Drosophila melanogaster is subject to position-effect variegation at a non-centromeric insertion site.

Balasov ML, Belyaeva ES, Shestopal SA, Makunin IV, Zhimulev IF.

Mol Gen Genet. 2000 Sep;264(1-2):105-11.

PMID:
11016839
34.

[Position effect variegation of the mosaic type, arising as a result of transposition AR4-24P[white, rosy] in the Drosophila melanogaster genome].

Balasov ML, Beliaeva ES, Shestopal SA, Makunin IV, Zhimulev IF.

Genetika. 2000 Jun;36(6):782-91. Russian.

PMID:
10923260
35.

[Comparison of the molecular and genetic map of the 2B6-2B7-8 of Drosophila melanogaster X-chromosome].

Makunin IV, Shestopal SA, Beliaeva ES, Ashburner M, Khimulev IF.

Genetika. 1999 Aug;35(8):1071-7. Russian.

PMID:
10546111
36.

[Microcloning and characteristics of DNA from regions of the centromeric heterochromatin of Drosophila melanogaster polytene chromosomes].

Rutsov NB, Alekseenko AA, Beliaeva ES, Volkova EI, Kokoza EB, Makunin IV, Moshkin IuM, Shestopal SA, Zhimulev IF.

Genetika. 1999 Jan;35(1):55-61. Russian.

PMID:
10330613
37.

A novel simple satellite DNA is colocalized with the Stalker retrotransposon in Drosophila melanogaster heterochromatin.

Makunin IV, Pokholkova GV, Kholodilov NG, Zakharkin SO, Bonaccorsi S, Dimitri P, Zhimulev IF.

Mol Gen Genet. 1999 Mar;261(2):381-7.

PMID:
10102374
38.

Molecular characterization of the deep orange (dor) gene of Drosophila melanogaster.

Shestopal SA, Makunin IV, Belyaeva ES, Ashburner M, Zhimulev IF.

Mol Gen Genet. 1997 Feb 20;253(5):642-8.

PMID:
9065698
39.

[An analysis of the DNA sequence in the region of the breakpoint of the T(1;2)dor(var7) translocation inducing the mosaic-type position effect in Drosophila melanogaster].

Makunin IV, Zakharkin SO, Kokoza EV, Pokholkova GV, Kholodilov NG, Zhimulev IF.

Tsitol Genet. 1996 Jan-Feb;30(1):8-14. Russian.

PMID:
8743012
40.

[Detection of a Drosophila melanogaster cDNA sequence, homologous to the transcript of the protein disulphide isomerase gene].

Makunin IV, Shestopal SA.

Dokl Akad Nauk. 1995 Dec;345(4):561-3. Russian. No abstract available.

PMID:
8634670
41.

[Isolation and characteristics of repeat DNA sequences from precentromere heterochromatin from the second chromosome of Drosophila melanogaster].

Makunin IV, Pokholkova GV, Zakharkin SO, Kholodilov NG, Zhimulev IF.

Dokl Akad Nauk. 1995 Sep;344(2):266-9. Russian. No abstract available.

PMID:
8535269
42.

[A position effect variegation model of chromatin compaction].

Balasov ML, Makunin IV.

Genetika. 1994 Jul;30(7):869-73. Review. Russian.

PMID:
7958801
43.

Observations on the induction of position effect variegation of euchromatic genes in Drosophila melanogaster.

Pokholkova GV, Makunin IV, Belyaeva ES, Zhimulev IF.

Genetics. 1993 May;134(1):231-42.

44.

[Molecular-cytogenetic analysis of heterochromatin fragments induced by gene inactivation in the variegation position effect in Drosophila].

Pokholkova GV, Makunin IV, Beliaeva ES, Zhimulev IF.

Dokl Akad Nauk. 1993 Mar;329(3):369-71. Russian. No abstract available.

PMID:
8481704

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