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Items: 9

1.

PAQMAN: Protein-nucleic acid affinity quantification by MAss spectrometry in nuclear extracts.

Gräwe C, Makowski MM, Vermeulen M.

Methods. 2019 Dec 16. pii: S1046-2023(19)30183-5. doi: 10.1016/j.ymeth.2019.12.003. [Epub ahead of print]

PMID:
31857188
2.

Global profiling of protein-DNA and protein-nucleosome binding affinities using quantitative mass spectrometry.

Makowski MM, Gräwe C, Foster BM, Nguyen NV, Bartke T, Vermeulen M.

Nat Commun. 2018 Apr 25;9(1):1653. doi: 10.1038/s41467-018-04084-0.

3.

A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF.

Choi J, Xu M, Makowski MM, Zhang T, Law MH, Kovacs MA, Granzhan A, Kim WJ, Parikh H, Gartside M, Trent JM, Teulade-Fichou MP, Iles MM, Newton-Bishop JA, Bishop DT, MacGregor S, Hayward NK, Vermeulen M, Brown KM.

Nat Genet. 2017 Sep;49(9):1326-1335. doi: 10.1038/ng.3927. Epub 2017 Jul 31.

4.

An Interaction Landscape of Ubiquitin Signaling.

Zhang X, Smits AH, van Tilburg GB, Jansen PW, Makowski MM, Ovaa H, Vermeulen M.

Mol Cell. 2017 Mar 2;65(5):941-955.e8. doi: 10.1016/j.molcel.2017.01.004. Epub 2017 Feb 9.

5.

SDHD Promoter Mutations Ablate GABP Transcription Factor Binding in Melanoma.

Zhang T, Xu M, Makowski MM, Lee C, Kovacs M, Fang J, Willems E, Trent JM, Hayward NK, Vermeulen M, Brown KM.

Cancer Res. 2017 Apr 1;77(7):1649-1661. doi: 10.1158/0008-5472.CAN-16-0919. Epub 2017 Jan 20.

6.

The dynamic interactome and genomic targets of Polycomb complexes during stem-cell differentiation.

Kloet SL, Makowski MM, Baymaz HI, van Voorthuijsen L, Karemaker ID, Santanach A, Jansen PWTC, Di Croce L, Vermeulen M.

Nat Struct Mol Biol. 2016 Jul;23(7):682-690. doi: 10.1038/nsmb.3248. Epub 2016 Jun 13.

7.

Cross-linking immunoprecipitation-MS (xIP-MS): Topological Analysis of Chromatin-associated Protein Complexes Using Single Affinity Purification.

Makowski MM, Willems E, Jansen PW, Vermeulen M.

Mol Cell Proteomics. 2016 Mar;15(3):854-65. doi: 10.1074/mcp.M115.053082. Epub 2015 Nov 11.

8.

An interaction proteomics survey of transcription factor binding at recurrent TERT promoter mutations.

Makowski MM, Willems E, Fang J, Choi J, Zhang T, Jansen PW, Brown KM, Vermeulen M.

Proteomics. 2016 Feb;16(3):417-26. doi: 10.1002/pmic.201500327. Epub 2016 Jan 8.

PMID:
26553150
9.

Adsorption, aggregation, and desorption of proteins on smectite particles.

Kolman K, Makowski MM, Golriz AA, Kappl M, Pigłowski J, Butt HJ, Kiersnowski A.

Langmuir. 2014 Oct 7;30(39):11650-9. doi: 10.1021/la502840s. Epub 2014 Sep 26.

PMID:
25216210

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