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Items: 1 to 50 of 803

1.

Competitive fitness of essential gene knockdowns reveals a broad-spectrum antibacterial inhibitor of the cell division protein FtsZ.

Hogan AM, Scoffone VC, Makarov V, Gislason AS, Tesfu H, Stietz MS, Brassinga AKC, Domaratzki M, Li X, Azzalin A, Biggiogera M, Riabova O, Monakhova N, Chiarelli LR, Riccardi G, Buroni S, Cardona ST.

Antimicrob Agents Chemother. 2018 Oct 8. pii: AAC.01231-18. doi: 10.1128/AAC.01231-18. [Epub ahead of print]

2.

Fluorescent benzothiazinone analogs efficiently and selectively label DprE1 in mycobacteria and actinobacteria.

Sommer R, Neres J, Piton J, Dhar N, van der Sar A, Mukherjee R, Laroche T, Dyson PJ, McKinney JD, Bitter W, Makarov V, Cole ST.

ACS Chem Biol. 2018 Oct 5. doi: 10.1021/acschembio.8b00790. [Epub ahead of print]

PMID:
30289689
3.

Macroscopic chimeralike behavior in a multiplex network.

Frolov NS, Maksimenko VA, Makarov VV, Kirsanov DV, Hramov AE, Kurths J.

Phys Rev E. 2018 Aug;98(2-1):022320. doi: 10.1103/PhysRevE.98.022320.

PMID:
30253535
4.

Assortative mixing in spatially-extended networks.

Makarov VV, Kirsanov DV, Frolov NS, Maksimenko VA, Li X, Wang Z, Hramov AE, Boccaletti S.

Sci Rep. 2018 Sep 14;8(1):13825. doi: 10.1038/s41598-018-32160-4.

5.

"Terhune-like" transformation of the terahertz polarization ellipse "mutually induced" by three-wave joint propagation in liquid.

Balakin AV, Garnov SV, Makarov VA, Kuzechkin NA, Obraztsov PA, Solyankin PM, Shkurinov AP, Zhu Y.

Opt Lett. 2018 Sep 15;43(18):4406-4409. doi: 10.1364/OL.43.004406.

PMID:
30211876
6.

HIV-1 Envelope Protein gp120 Promotes Proliferation and the Activation of Glycolysis in Glioma Cell.

Valentín-Guillama G, López S, Kucheryavykh YV, Chorna NE, Pérez J, Ortiz-Rivera J, Inyushin M, Makarov V, Valentín-Acevedo A, Quinones-Hinojosa A, Boukli N, Kucheryavykh LY.

Cancers (Basel). 2018 Sep 1;10(9). pii: E301. doi: 10.3390/cancers10090301.

7.

EPR hyperthermia of S. cerevisiae using superparamagnetic Fe3O4 nanoparticles.

Khmelinskii I, Makarov VI.

J Therm Biol. 2018 Oct;77:55-61. doi: 10.1016/j.jtherbio.2018.08.004. Epub 2018 Aug 9.

PMID:
30196899
8.

An optimized background regimen for treatment of active tuberculosis with the next-generation benzothiazinone Macozinone (PBTZ169).

Lupien A, Vocat A, Foo CS, Blattes E, Gillon JY, Makarov V, Cole ST.

Antimicrob Agents Chemother. 2018 Aug 20. pii: AAC.00840-18. doi: 10.1128/AAC.00840-18. [Epub ahead of print]

PMID:
30126954
9.

Eavesdropping and countermeasures for backflash side channel in quantum cryptography.

Pinheiro PVP, Chaiwongkhot P, Sajeed S, Horn RT, Bourgoin JP, Jennewein T, Lütkenhaus N, Makarov V.

Opt Express. 2018 Aug 6;26(16):21020-21032. doi: 10.1364/OE.26.021020.

PMID:
30119408
10.

Investigating the Mechanism of Action of Diketopiperazines Inhibitors of the Burkholderia cenocepacia Quorum Sensing Synthase CepI: A Site-Directed Mutagenesis Study.

Buroni S, Scoffone VC, Fumagalli M, Makarov V, Cagnone M, Trespidi G, Rossi E, Forneris F, Riccardi G, Chiarelli LR.

Front Pharmacol. 2018 Jul 31;9:836. doi: 10.3389/fphar.2018.00836. eCollection 2018.

11.

Integrated Genomic Analysis of Hürthle Cell Cancer Reveals Oncogenic Drivers, Recurrent Mitochondrial Mutations, and Unique Chromosomal Landscapes.

Ganly I, Makarov V, Deraje S, Dong Y, Reznik E, Seshan V, Nanjangud G, Eng S, Bose P, Kuo F, Morris LGT, Landa I, Carrillo Albornoz PB, Riaz N, Nikiforov YE, Patel K, Umbricht C, Zeiger M, Kebebew E, Sherman E, Ghossein R, Fagin JA, Chan TA.

Cancer Cell. 2018 Aug 13;34(2):256-270.e5. doi: 10.1016/j.ccell.2018.07.002.

PMID:
30107176
12.

Comparative Biomechanical Analysis of Stress-Strain State of the Elbow Joint After Displaced Radial Head Fractures.

Strafun S, Levadnyi I, Makarov V, Awrejcewicz J.

J Med Biol Eng. 2018;38(4):618-624. doi: 10.1007/s40846-017-0334-1. Epub 2017 Sep 26.

13.

Computational method for discovery of biomarker signatures from large, complex data sets.

Makarov V, Gorlin A.

Comput Biol Chem. 2018 Oct;76:161-168. doi: 10.1016/j.compbiolchem.2018.07.008. Epub 2018 Jul 10.

PMID:
30029027
14.

Structure-Based Drug Design and Characterization of Sulfonyl-Piperazine Benzothiazinone Inhibitors of DprE1 from Mycobacterium tuberculosis.

Piton J, Vocat A, Lupien A, Foo CS, Riabova O, Makarov V, Cole ST.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e00681-18. doi: 10.1128/AAC.00681-18. Print 2018 Oct.

15.

Copper-related toxicity in replicating and dormant Mycobacterium tuberculosis caused by 1-hydroxy-5-R-pyridine-2(1H)-thiones.

Salina EG, Huszár S, Zemanová J, Keruchenko J, Riabova O, Kazakova E, Grigorov A, Azhikina T, Kaprelyants A, Mikušová K, Makarov V.

Metallomics. 2018 Jul 18;10(7):992-1002. doi: 10.1039/c8mt00067k.

PMID:
29946601
16.

Angioleiomyoma of the Plantar Foot.

Lepoff A, Makarov V, Williams M.

J Am Podiatr Med Assoc. 2018 May;108(3):262-266. doi: 10.7547/17-071.

PMID:
29932748
17.

Fast social-like learning of complex behaviors based on motor motifs.

Calvo Tapia C, Tyukin IY, Makarov VA.

Phys Rev E. 2018 May;97(5-1):052308. doi: 10.1103/PhysRevE.97.052308.

PMID:
29906958
18.

Multiscale neural connectivity during human sensory processing in the brain.

Maksimenko VA, Runnova AE, Frolov NS, Makarov VV, Nedaivozov V, Koronovskii AA, Pisarchik A, Hramov AE.

Phys Rev E. 2018 May;97(5-1):052405. doi: 10.1103/PhysRevE.97.052405.

PMID:
29906840
19.

Guide RNA Design for CRISPR/Cas9-Mediated Potato Genome Editing.

Khromov AV, Gushchin VA, Timerbaev VI, Kalinina NO, Taliansky ME, Makarov VV.

Dokl Biochem Biophys. 2018 Mar;479(1):90-94. doi: 10.1134/S1607672918020084. Epub 2018 May 19.

PMID:
29779105
20.

Müller glial cells contribute to dim light vision in the spectacled caiman (Caiman crocodilus fuscus): Analysis of retinal light transmission.

Agte S, Savvinov A, Karl A, Zayas-Santiago A, Ulbricht E, Makarov VI, Reichenbach A, Bringmann A, Skatchkov SN.

Exp Eye Res. 2018 Aug;173:91-108. doi: 10.1016/j.exer.2018.05.009. Epub 2018 May 25.

PMID:
29763583
21.

[Evaluation of the cardioprotective effect of ubiquinol on the model of reperfusion injury of rat myocardium].

Kalatanova AV, Makarov VG, Faustova NM, Gushchin YI, Makarova MN.

Biomed Khim. 2018 Mar;64(2):188-194. doi: 10.18097/PBMC20186402188. Russian.

PMID:
29723149
22.

Pharmacokinetic and Tissue Distribution of Fucoidan from Fucus vesiculosus after Oral Administration to Rats.

Pozharitskaya ON, Shikov AN, Faustova NM, Obluchinskaya ED, Kosman VM, Vuorela H, Makarov VG.

Mar Drugs. 2018 Apr 18;16(4). pii: E132. doi: 10.3390/md16040132.

23.

Latent Factors Limiting the Performance of sEMG-Interfaces.

Lobov S, Krilova N, Kastalskiy I, Kazantsev V, Makarov VA.

Sensors (Basel). 2018 Apr 6;18(4). pii: E1122. doi: 10.3390/s18041122.

24.

Artificial neural network detects human uncertainty.

Hramov AE, Frolov NS, Maksimenko VA, Makarov VV, Koronovskii AA, Garcia-Prieto J, Antón-Toro LF, Maestú F, Pisarchik AN.

Chaos. 2018 Mar;28(3):033607. doi: 10.1063/1.5002892.

PMID:
29604631
25.

Computational Modeling of In Vitro Swelling of Mitochondria: A Biophysical Approach.

Makarov VI, Khmelinskii I, Javadov S.

Molecules. 2018 Mar 28;23(4). pii: E783. doi: 10.3390/molecules23040783.

26.

High-Dimensional Brain: A Tool for Encoding and Rapid Learning of Memories by Single Neurons.

Tyukin I, Gorban AN, Calvo C, Makarova J, Makarov VA.

Bull Math Biol. 2018 Mar 19. doi: 10.1007/s11538-018-0415-5. [Epub ahead of print]

PMID:
29556797
27.

A multitarget approach to drug discovery inhibiting Mycobacterium tuberculosis PyrG and PanK.

Chiarelli LR, Mori G, Orena BS, Esposito M, Lane T, de Jesus Lopes Ribeiro AL, Degiacomi G, Zemanová J, Szádocka S, Huszár S, Palčeková Z, Manfredi M, Gosetti F, Lelièvre J, Ballell L, Kazakova E, Makarov V, Marengo E, Mikusova K, Cole ST, Riccardi G, Ekins S, Pasca MR.

Sci Rep. 2018 Feb 16;8(1):3187. doi: 10.1038/s41598-018-21614-4.

28.

Macroscopic and microscopic spectral properties of brain networks during local and global synchronization.

Maksimenko VA, Lüttjohann A, Makarov VV, Goremyko MV, Koronovskii AA, Nedaivozov V, Runnova AE, van Luijtelaar G, Hramov AE, Boccaletti S.

Phys Rev E. 2017 Jul;96(1-1):012316. doi: 10.1103/PhysRevE.96.012316. Epub 2017 Jul 20.

PMID:
29347072
29.

Polarization control of terahertz radiation from two-color femtosecond gas breakdown plasma.

Kosareva O, Esaulkov M, Panov N, Andreeva V, Shipilo D, Solyankin P, Demircan A, Babushkin I, Makarov V, Morgner U, Shkurinov A, Savel'ev A.

Opt Lett. 2018 Jan 1;43(1):90-93. doi: 10.1364/OL.43.000090.

PMID:
29328203
30.

Data on a delivery of biomolecules into Nicothiana benthamiana leaves using different nanoparticles.

Makhotenko AV, Snigir EA, Kalinina NO, Makarov VV, Taliansky ME.

Data Brief. 2017 Dec 21;16:1034-1037. doi: 10.1016/j.dib.2017.12.031. eCollection 2018 Feb.

31.

Visual perception affected by motivation and alertness controlled by a noninvasive brain-computer interface.

Maksimenko VA, Runnova AE, Zhuravlev MO, Makarov VV, Nedayvozov V, Grubov VV, Pchelintceva SV, Hramov AE, Pisarchik AN.

PLoS One. 2017 Dec 21;12(12):e0188700. doi: 10.1371/journal.pone.0188700. eCollection 2017.

32.

Merkel Cell Carcinoma Patients Presenting Without a Primary Lesion Have Elevated Markers of Immunity, Higher Tumor Mutation Burden, and Improved Survival.

Vandeven N, Lewis CW, Makarov V, Riaz N, Paulson KG, Hippe D, Bestick A, Doumani R, Marx T, Takagishi S, Chan TA, Choi J, Nghiem P.

Clin Cancer Res. 2018 Feb 15;24(4):963-971. doi: 10.1158/1078-0432.CCR-17-1678. Epub 2017 Dec 15.

PMID:
29246939
33.

Interplay between geo-population factors and hierarchy of cities in multilayer urban networks.

Makarov VV, Hramov AE, Kirsanov DV, Maksimenko VA, Goremyko MV, Ivanov AV, Yashkov IA, Boccaletti S.

Sci Rep. 2017 Dec 8;7(1):17246. doi: 10.1038/s41598-017-17576-8.

34.

Patient HLA class I genotype influences cancer response to checkpoint blockade immunotherapy.

Chowell D, Morris LGT, Grigg CM, Weber JK, Samstein RM, Makarov V, Kuo F, Kendall SM, Requena D, Riaz N, Greenbaum B, Carroll J, Garon E, Hyman DM, Zehir A, Solit D, Berger M, Zhou R, Rizvi NA, Chan TA.

Science. 2018 Feb 2;359(6375):582-587. doi: 10.1126/science.aao4572. Epub 2017 Dec 7.

35.

Simple kinetic model of mitochondrial swelling in cardiac cells.

Chapa-Dubocq X, Makarov V, Javadov S.

J Cell Physiol. 2018 Jul;233(7):5310-5321. doi: 10.1002/jcp.26335. Epub 2018 Jan 23.

36.

Traditional and Current Food Use of Wild Plants Listed in the Russian Pharmacopoeia.

Shikov AN, Tsitsilin AN, Pozharitskaya ON, Makarov VG, Heinrich M.

Front Pharmacol. 2017 Nov 21;8:841. doi: 10.3389/fphar.2017.00841. eCollection 2017. Review.

37.

Chemical Profiling and Bioactivity of Body Wall Lipids from Strongylocentrotus droebachiensis.

Shikov AN, Laakso I, Pozharitskaya ON, Seppänen-Laakso T, Krishtopina AS, Makarova MN, Vuorela H, Makarov V.

Mar Drugs. 2017 Nov 24;15(12). pii: E365. doi: 10.3390/md15120365.

38.

Mutant-IDH1-dependent chromatin state reprogramming, reversibility, and persistence.

Turcan S, Makarov V, Taranda J, Wang Y, Fabius AWM, Wu W, Zheng Y, El-Amine N, Haddock S, Nanjangud G, LeKaye HC, Brennan C, Cross J, Huse JT, Kelleher NL, Osten P, Thompson CB, Chan TA.

Nat Genet. 2018 Jan;50(1):62-72. doi: 10.1038/s41588-017-0001-z. Epub 2017 Nov 27.

PMID:
29180699
39.

A new tridecapeptide with an octaarginine vector has analgesic therapeutic potential and prevents morphine-induced tolerance.

Kashkin VA, Shekunova EV, Titov MI, Eliseev II, Gureev MA, Porozov YB, Makarova MN, Makarov VG.

Peptides. 2018 Jan;99:61-69. doi: 10.1016/j.peptides.2017.11.011. Epub 2017 Nov 24.

PMID:
29175519
40.

Publisher Correction: Invisible Trojan-horse attack.

Sajeed S, Minshull C, Jain N, Makarov V.

Sci Rep. 2017 Nov 22;7(1):16387. doi: 10.1038/s41598-017-14859-y.

41.

Molecular Alliance of Lymantria dispar Multiple Nucleopolyhedrovirus and a Short Unmodified Antisense Oligonucleotide of Its Anti-Apoptotic IAP-3 Gene: A Novel Approach for Gypsy Moth Control.

Oberemok VV, Laikova KV, Zaitsev AS, Shumskykh MN, Kasich IN, Gal'chinsky NV, Bekirova VV, Makarov VV, Agranovsky AA, Gushchin VA, Zubarev IV, Kubyshkin AV, Fomochkina II, Gorlov MV, Skorokhod OA.

Int J Mol Sci. 2017 Nov 17;18(11). pii: E2446. doi: 10.3390/ijms18112446.

42.

Identification of unique neoantigen qualities in long-term survivors of pancreatic cancer.

Balachandran VP, Łuksza M, Zhao JN, Makarov V, Moral JA, Remark R, Herbst B, Askan G, Bhanot U, Senbabaoglu Y, Wells DK, Cary CIO, Grbovic-Huezo O, Attiyeh M, Medina B, Zhang J, Loo J, Saglimbeni J, Abu-Akeel M, Zappasodi R, Riaz N, Smoragiewicz M, Kelley ZL, Basturk O; Australian Pancreatic Cancer Genome Initiative; Garvan Institute of Medical Research; Prince of Wales Hospital; Royal North Shore Hospital; University of Glasgow; St Vincent’s Hospital; QIMR Berghofer Medical Research Institute; University of Melbourne, Centre for Cancer Research; University of Queensland, Institute for Molecular Bioscience; Bankstown Hospital; Liverpool Hospital; Royal Prince Alfred Hospital, Chris O’Brien Lifehouse; Westmead Hospital; Fremantle Hospital; St John of God Healthcare; Royal Adelaide Hospital; Flinders Medical Centre; Envoi Pathology; Princess Alexandria Hospital; Austin Hospital; Johns Hopkins Medical Institutes; ARC-Net Centre for Applied Research on Cancer, Gönen M, Levine AJ, Allen PJ, Fearon DT, Merad M, Gnjatic S, Iacobuzio-Donahue CA, Wolchok JD, DeMatteo RP, Chan TA, Greenbaum BD, Merghoub T, Leach SD.

Nature. 2017 Nov 23;551(7681):512-516. doi: 10.1038/nature24462. Epub 2017 Nov 8.

43.

A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy.

Łuksza M, Riaz N, Makarov V, Balachandran VP, Hellmann MD, Solovyov A, Rizvi NA, Merghoub T, Levine AJ, Chan TA, Wolchok JD, Greenbaum BD.

Nature. 2017 Nov 23;551(7681):517-520. doi: 10.1038/nature24473. Epub 2017 Nov 8.

44.

Benzoylphenyl thiocyanates are new, effective inhibitors of the mycobacterial resuscitation promoting factor B protein.

Demina GR, Nikitushkin VD, Shleeva MO, Riabova OB, Lepioshkin AY, Makarov VA, Kaprelyants AS.

Ann Clin Microbiol Antimicrob. 2017 Nov 2;16(1):69. doi: 10.1186/s12941-017-0244-7.

45.

Multi-dimensional genomic analysis of myoepithelial carcinoma identifies prevalent oncogenic gene fusions.

Dalin MG, Katabi N, Persson M, Lee KW, Makarov V, Desrichard A, Walsh LA, West L, Nadeem Z, Ramaswami D, Havel JJ, Kuo F, Chadalavada K, Nanjangud GJ, Ganly I, Riaz N, Ho AL, Antonescu CR, Ghossein R, Stenman G, Chan TA, Morris LGT.

Nat Commun. 2017 Oct 30;8(1):1197. doi: 10.1038/s41467-017-01178-z.

46.

Structure of polarization singularities of a light beam at triple frequency generated in isotropic medium by singularly polarized beam.

Grigoriev KS, Ryzhikov PS, Cherepetskaya EB, Makarov VA.

Opt Express. 2017 Oct 16;25(21):25416-25421. doi: 10.1364/OE.25.025416.

PMID:
29041209
47.

Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab.

Riaz N, Havel JJ, Makarov V, Desrichard A, Urba WJ, Sims JS, Hodi FS, Martín-Algarra S, Mandal R, Sharfman WH, Bhatia S, Hwu WJ, Gajewski TF, Slingluff CL Jr, Chowell D, Kendall SM, Chang H, Shah R, Kuo F, Morris LGT, Sidhom JW, Schneck JP, Horak CE, Weinhold N, Chan TA.

Cell. 2017 Nov 2;171(4):934-949.e15. doi: 10.1016/j.cell.2017.09.028. Epub 2017 Oct 12.

PMID:
29033130
48.

Invisible Trojan-horse attack.

Sajeed S, Minshull C, Jain N, Makarov V.

Sci Rep. 2017 Aug 21;7(1):8403. doi: 10.1038/s41598-017-08279-1. Erratum in: Sci Rep. 2017 Nov 22;7(1):16387.

49.

NOS2-deficient mice with hypoxic necrotizing lung lesions predict outcomes of tuberculosis chemotherapy in humans.

Gengenbacher M, Duque-Correa MA, Kaiser P, Schuerer S, Lazar D, Zedler U, Reece ST, Nayyar A, Cole ST, Makarov V, Barry Iii CE, Dartois V, Kaufmann SHE.

Sci Rep. 2017 Aug 18;7(1):8853. doi: 10.1038/s41598-017-09177-2.

50.

An Integrated Systems Biology Approach Identifies TRIM25 as a Key Determinant of Breast Cancer Metastasis.

Walsh LA, Alvarez MJ, Sabio EY, Reyngold M, Makarov V, Mukherjee S, Lee KW, Desrichard A, Turcan Ş, Dalin MG, Rajasekhar VK, Chen S, Vahdat LT, Califano A, Chan TA.

Cell Rep. 2017 Aug 15;20(7):1623-1640. doi: 10.1016/j.celrep.2017.07.052.

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