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Items: 42

1.

Cytoplasmic localization and reorganization in ascidian eggs: role of postplasmic/PEM RNAs in axis formation and fate determination.

Makabe KW, Nishida H.

Wiley Interdiscip Rev Dev Biol. 2012 Jul-Aug;1(4):501-18. doi: 10.1002/wdev.54. Epub 2012 Apr 9. Review.

PMID:
23801532
2.

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.

Tassy O, Dauga D, Daian F, Sobral D, Robin F, Khoueiry P, Salgado D, Fox V, Caillol D, Schiappa R, Laporte B, Rios A, Luxardi G, Kusakabe T, Joly JS, Darras S, Christiaen L, Contensin M, Auger H, Lamy C, Hudson C, Rothbächer U, Gilchrist MJ, Makabe KW, Hotta K, Fujiwara S, Satoh N, Satou Y, Lemaire P.

Genome Res. 2010 Oct;20(10):1459-68. doi: 10.1101/gr.108175.110. Epub 2010 Jul 20.

3.

The functional analysis of Type I postplasmic/PEM mRNAs in embryos of the ascidian Halocynthia roretzi.

Nakamura Y, Makabe KW, Nishida H.

Dev Genes Evol. 2006 Feb;216(2):69-80. Epub 2005 Dec 21.

PMID:
16369806
4.
5.

Evolutionarily conserved non-AUG translation initiation in NAT1/p97/DAP5 (EIF4G2).

Takahashi K, Maruyama M, Tokuzawa Y, Murakami M, Oda Y, Yoshikane N, Makabe KW, Ichisaka T, Yamanaka S.

Genomics. 2005 Mar;85(3):360-71.

PMID:
15718103
6.

An ascidian homolog of vertebrate iodothyronine deiodinases.

Shepherdley CA, Klootwijk W, Makabe KW, Visser TJ, Kuiper GG.

Endocrinology. 2004 Mar;145(3):1255-68. Epub 2003 Dec 4.

PMID:
14657009
7.

Neural expression of the Huntington's disease gene as a chordate evolutionary novelty.

Kauffman JS, Zinovyeva A, Yagi K, Makabe KW, Raff RA.

J Exp Zool B Mol Dev Evol. 2003 Jun 15;297(1):57-64.

PMID:
12955844
8.

Identification of a gene encoding a typical gamma-carboxyglutamic acid domain in the tunicate Halocynthia roretzi.

Wang CP, Yagi K, Lin PJ, Jin DY, Makabe KW, Stafford DW.

J Thromb Haemost. 2003 Jan;1(1):118-23.

9.

Localization and expression pattern of type I postplasmic mRNAs in embryos of the ascidian Halocynthia roretzi.

Nakamura Y, Makabe KW, Nishida H.

Gene Expr Patterns. 2003 Mar;3(1):71-5.

PMID:
12609606
10.

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, Kawashima T, Lemaire P, Martinez D, Meinertzhagen IA, Necula S, Nonaka M, Putnam N, Rash S, Saiga H, Satake M, Terry A, Yamada L, Wang HG, Awazu S, Azumi K, Boore J, Branno M, Chin-Bow S, DeSantis R, Doyle S, Francino P, Keys DN, Haga S, Hayashi H, Hino K, Imai KS, Inaba K, Kano S, Kobayashi K, Kobayashi M, Lee BI, Makabe KW, Manohar C, Matassi G, Medina M, Mochizuki Y, Mount S, Morishita T, Miura S, Nakayama A, Nishizaka S, Nomoto H, Ohta F, Oishi K, Rigoutsos I, Sano M, Sasaki A, Sasakura Y, Shoguchi E, Shin-i T, Spagnuolo A, Stainier D, Suzuki MM, Tassy O, Takatori N, Tokuoka M, Yagi K, Yoshizaki F, Wada S, Zhang C, Hyatt PD, Larimer F, Detter C, Doggett N, Glavina T, Hawkins T, Richardson P, Lucas S, Kohara Y, Levine M, Satoh N, Rokhsar DS.

Science. 2002 Dec 13;298(5601):2157-67.

12.
13.

Retinoic acid differently affects the formation of palps and surrounding neurons in the ascidian tadpole.

Yagi K, Makabe KW.

Dev Genes Evol. 2002 Jul;212(6):288-92. Epub 2002 May 24.

PMID:
12111213
14.

[The comprehensive analysis of maternal genetic information of the ascidian Halocynthia roretzi].

Kawashima T, Makabe KW.

Tanpakushitsu Kakusan Koso. 2001 Dec;46(16 Suppl):2446-50. Review. Japanese. No abstract available.

PMID:
11802409
15.

Update of MAGEST: Maboya Gene Expression patterns and Sequence Tags.

Kawashima T, Kawashima S, Kohara Y, Kanehisa M, Makabe KW.

Nucleic Acids Res. 2002 Jan 1;30(1):119-20.

16.

Ascidian Wnt-5 gene is involved in the morphogenetic movement of notochord cells.

Sasakura Y, Makabe KW.

Dev Growth Differ. 2001 Oct;43(5):573-82.

PMID:
11576174
17.

Large-scale cDNA analysis of the maternal genetic information in the egg of Halocynthia roretzi for a gene expression catalog of ascidian development.

Makabe KW, Kawashima T, Kawashima S, Minokawa T, Adachi A, Kawamura H, Ishikawa H, Yasuda R, Yamamoto H, Kondoh K, Arioka S, Sasakura Y, Kobayashi A, Yagi K, Shojima K, Kondoh Y, Kido S, Tsujinami M, Nishimura N, Takahashi M, Nakamura T, Kanehisa M, Ogasawara M, Nishikata T, Nishida H.

Development. 2001 Jul;128(13):2555-67.

18.

Binary specification of nerve cord and notochord cell fates in ascidian embryos.

Minokawa T, Yagi K, Makabe KW, Nishida H.

Development. 2001 Jun;128(11):2007-17.

20.
21.

Expression patterns of musashi homologs of the ascidians, Halocynthia roretzi and Ciona intestinalis.

Kawashima T, Murakami AR, Ogasawara M, Tanaka K, Isoda R, Sasakura Y, Nishikata T, Okano H, Makabe KW.

Dev Genes Evol. 2000 Mar;210(3):162-5.

PMID:
11180818
22.
23.

Ascidian Wnt-7 gene is expressed exclusively in the tail neural tube of tailbud embryos.

Sasakura Y, Makabe KW.

Dev Genes Evol. 2000 Dec;210(12):641-3.

PMID:
11151302
24.

Characterization of a novel member of the FGFR family, HrFGFR, in Halocynthia roretzi.

Kamei S, Yajima I, Yamamoto H, Kobayashi A, Makabe KW, Yamazaki H, Hayashi SI, Kunisada T.

Biochem Biophys Res Commun. 2000 Aug 28;275(2):503-8.

PMID:
10964694
25.

MAGEST: MAboya gene expression patterns and sequence tags.

Kawashima T, Kawashima S, Kanehisa M, Nishida H, Makabe KW.

Nucleic Acids Res. 2000 Jan 1;28(1):133-5.

26.

A maternal RNA encoding smad1/5 is segregated to animal blastomeres during ascidian development.

Kobayashi A, Sasakura Y, Ogasawara M, Makabe KW.

Dev Growth Differ. 1999 Aug;41(4):419-27.

PMID:
10466929
27.
28.

HrWnt-5: a maternally expressed ascidian Wnt gene with posterior localization in early embryos.

Sasakura Y, Ogasawara M, Makabe KW.

Int J Dev Biol. 1998 May;42(4):573-9.

29.

Expression of actin genes in the arrow worm Paraspadella gotoi (Chaetognatha).

Yasuda E, Goto T, Makabe KW, Satoh N.

Zoolog Sci. 1997 Dec;14(6):953-60.

PMID:
9520638
30.

Isolation of cDNA clones for genes that are expressed in the tail region of the ascidian tailbud embryo.

Takahashi H, Ishida K, Makabe KW, Satoh N.

Int J Dev Biol. 1997 Oct;41(5):691-8.

31.

Notch homologue from Halocynthia roretzi is preferentially expressed in the central nervous system during ascidian embryogenesis.

Hori S, Saitoh T, Matsumoto M, Makabe KW, Nishida H.

Dev Genes Evol. 1997 Dec;207(6):371-380.

PMID:
27747436
32.

Expression of endostyle-specific genes in the ascidian Halocynthia roretzi.

Ogasawara M, Tanaka KJ, Makabe KW, Satoh N.

Dev Genes Evol. 1996 Nov;206(3):227-35. doi: 10.1007/s004270050048.

PMID:
24173524
33.

Expression of pharyngeal gill-specific genes in the ascidian Halocynthia roretzi.

Tanaka KJ, Ogasawara M, Makabe KW, Satoh N.

Dev Genes Evol. 1996 Nov;206(3):218-26. doi: 10.1007/s004270050047.

PMID:
24173523
34.

Cis-regulatory control of the SM50 gene, an early marker of skeletogenic lineage specification in the sea urchin embryo.

Makabe KW, Kirchhamer CV, Britten RJ, Davidson EH.

Development. 1995 Jul;121(7):1957-70.

35.

Expression of AMD 1, a gene for a MyoD 1-related factor in the ascidian Halocynthia roretzi.

Araki S, Saiga H, Makabe KW, Satoh N.

Roux Arch Dev Biol. 1994 May;203(6):320-327. doi: 10.1007/BF00457803.

PMID:
28305825
36.

Novel genes expressed differentially in ascidians with alternate modes of development.

Swalla BJ, Makabe KW, Satoh N, Jeffery WR.

Development. 1993 Oct;119(2):307-18.

38.

Regulated spatial expression of fusion gene constructs with the 5' upstream region of Halocynthia roretzi muscle actin gene in Ciona savignyi embryos.

Hikosaka A, Satoh N, Makabe KW.

Roux Arch Dev Biol. 1993 Jan;203(1-2):104-112. doi: 10.1007/BF00539896.

PMID:
28305986
39.

Phylogenetic Relationships between Solitary and Colonial Ascidians, as Inferred from the Sequence of the Central Region of their Respective 18S rDNAs.

Wada H, Makabe KW, Nakauchi M, Satoh N.

Biol Bull. 1992 Dec;183(3):448-455. doi: 10.2307/1542021.

PMID:
29300511
40.

Tunicate muscle actin genes. Structure and organization as a gene cluster.

Kusakabe T, Makabe KW, Satoh N.

J Mol Biol. 1992 Oct 5;227(3):955-60.

PMID:
1404400
41.

Molecular cloning and expression of a novel homeobox gene AHox1 of the ascidian, Halocynthia roretzi.

Saiga H, Mizokami A, Makabe KW, Satoh N, Mita T.

Development. 1991 Mar;111(3):821-8.

42.

Specific expression of myosin heavy chain gene in muscle lineage cells of the ascidian embryo.

Makabe KW, Fujiwara S, Saiga H, Satoh N.

Roux Arch Dev Biol. 1990 May;199(5):307-313. doi: 10.1007/BF01709509.

PMID:
28306115

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