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Items: 1 to 50 of 149

1.

Onconase responsive genes in human mesothelioma cells: implications for an RNA damaging therapeutic agent.

Altomare DA, Rybak SM, Pei J, Maizel JV, Cheung M, Testa JR, Shogen K.

BMC Cancer. 2010 Feb 5;10:34. doi: 10.1186/1471-2407-10-34.

2.

RNA2D3D: a program for generating, viewing, and comparing 3-dimensional models of RNA.

Martinez HM, Maizel JV Jr, Shapiro BA.

J Biomol Struct Dyn. 2008 Jun;25(6):669-83.

3.

Data mining of imperfect double-stranded RNA in 3' untranslated regions of eukaryotic mRNAs.

Le SY, Maizel JV Jr.

Biomol Eng. 2007 Sep;24(3):351-9. Epub 2007 Mar 3.

PMID:
17482872
4.

An algorithm for detecting homologues of known structured RNAs in genomes.

Le SY, Maizel JV Jr, Zhang K.

Proc IEEE Comput Syst Bioinform Conf. 2004:300-10.

PMID:
16448023
5.

Discovering well-ordered folding patterns in nucleotide sequences.

Le SY, Chen JH, Konings D, Maizel JV Jr.

Bioinformatics. 2003 Feb 12;19(3):354-61.

PMID:
12584120
6.

RNA molecules with structure dependent functions are uniquely folded.

Le SY, Zhang K, Maizel JV Jr.

Nucleic Acids Res. 2002 Aug 15;30(16):3574-82.

7.

The hydrophobic effect: a new insight from cold denaturation and a two-state water structure.

Tsai CJ, Maizel JV Jr, Nussinov R.

Crit Rev Biochem Mol Biol. 2002;37(2):55-69. Review.

PMID:
12027264
8.

Local thermodynamic stability scores are well represented by a non-central student's t distribution.

Le SY, Liu WM, Chen JH, Maizel JV Jr.

J Theor Biol. 2001 Jun 21;210(4):411-23.

PMID:
11403562
9.
10.

SDS polyacrylamide gel electrophoresis.

Maizel JV.

Trends Biochem Sci. 2000 Dec;25(12):590-2. Review. No abstract available.

PMID:
11116183
11.

Anatomy of protein structures: visualizing how a one-dimensional protein chain folds into a three-dimensional shape.

Tsai CJ, Maizel JV Jr, Nussinov R.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12038-43.

12.

A gender-specific mRNA encoding a cytotoxic ribonuclease contains a 3' UTR of unusual length and structure.

Chen S, Le SY, Newton DL, Maizel JV Jr, Rybak SM.

Nucleic Acids Res. 2000 Jun 15;28(12):2375-82.

13.

Prediction of common secondary structures of RNAs: a genetic algorithm approach.

Chen JH, Le SY, Maizel JV.

Nucleic Acids Res. 2000 Feb 15;28(4):991-9.

14.
15.
16.

Ion-RNA interactions in the RNA pseudoknot of a ribosomal frameshifting site: molecular modeling studies.

Le SY, Chen JH, Pattabiraman N, Maizel JV Jr.

J Biomol Struct Dyn. 1998 Aug;16(1):1-11.

PMID:
9745889
17.
18.
19.
20.

Unusual folding regions and ribosome landing pad within hepatitis C virus and pestivirus RNAs.

Le SY, Sonenberg N, Maizel JV Jr.

Gene. 1995 Mar 10;154(2):137-43.

PMID:
7890155
21.

A method for predicting common structures of homologous RNAs.

Le SY, Zhang K, Maizel JV Jr.

Comput Biomed Res. 1995 Feb;28(1):53-66.

PMID:
7542191
22.
23.
24.
25.

Prediction of alternative RNA secondary structures based on fluctuating thermodynamic parameters.

Le SY, Chen JH, Maizel JV Jr.

Nucleic Acids Res. 1993 May 11;21(9):2173-8.

26.

Identification of unusual RNA folding patterns encoded by bacteriophage T4 gene 60.

Le SY, Chen JH, Maizel JV Jr.

Gene. 1993 Feb 14;124(1):21-8.

PMID:
8382655
27.

Conserved tertiary structure elements in the 5' untranslated region of human enteroviruses and rhinoviruses.

Le SY, Chen JH, Sonenberg N, Maizel JV.

Virology. 1992 Dec;191(2):858-66.

PMID:
1333125
28.

A procedure for RNA pseudoknot prediction.

Chen JH, Le SY, Maizel JV.

Comput Appl Biosci. 1992 Jun;8(3):243-8.

PMID:
1378773
29.

Extensive sequence-specific information throughout the CAR/RRE, the target sequence of the human immunodeficiency virus type 1 Rev protein.

Dayton ET, Konings DA, Powell DM, Shapiro BA, Butini L, Maizel JV, Dayton AI.

J Virol. 1992 Feb;66(2):1139-51.

30.
31.

RNA pseudoknots downstream of the frameshift sites of retroviruses.

Le SY, Shapiro BA, Chen JH, Nussinov R, Maizel JV.

Genet Anal Tech Appl. 1991 Nov;8(7):191-205.

PMID:
1663382
32.

Detection of unusual RNA folding regions in HIV and SIV sequences.

Le SY, Chen JH, Maizel JV.

Comput Appl Biosci. 1991 Jan;7(1):51-5.

PMID:
2004274
33.

Visna virus encodes a post-transcriptional regulator of viral structural gene expression.

Tiley LS, Brown PH, Le SY, Maizel JV, Clements JE, Cullen BR.

Proc Natl Acad Sci U S A. 1990 Oct;87(19):7497-501. Erratum in: Proc Natl Acad Sci U S A 1990 Dec;87(23):9508.

34.

HIV-1 reverse transcriptase: structure predictions for the polymerase domain.

Barber AM, Hizi A, Maizel JV Jr, Hughes SH.

AIDS Res Hum Retroviruses. 1990 Sep;6(9):1061-72. Review.

PMID:
1702298
35.

Localization and molecular modelling of the membrane-inserted domain of the ninth component of human complement and perforin.

Peitsch MC, Amiguet P, Guy R, Brunner J, Maizel JV Jr, Tschopp J.

Mol Immunol. 1990 Jul;27(7):589-602.

PMID:
2395434
36.

Speeding up the dynamic algorithm for planar RNA folding.

Nussinov R, Shapiro B, Le SY, Maizel JV Jr.

Math Biosci. 1990 Jun;100(1):33-47.

PMID:
1724937
37.

SequenceEditingAligner: a multiple sequence editor and aligner.

Barber AM, Maizel JV Jr.

Genet Anal Tech Appl. 1990 Apr;7(2):39-45.

PMID:
2328141
38.

A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses.

Le SY, Malim MH, Cullen BR, Maizel JV.

Nucleic Acids Res. 1990 Mar 25;18(6):1613-23.

39.

A computational procedure for assessing the significance of RNA secondary structure.

Chen JH, Le SY, Shapiro B, Currey KM, Maizel JV.

Comput Appl Biosci. 1990 Jan;6(1):7-18.

PMID:
1690072
40.

Functional comparison of the Rev trans-activators encoded by different primate immunodeficiency virus species.

Malim MH, Böhnlein S, Fenrick R, Le SY, Maizel JV, Cullen BR.

Proc Natl Acad Sci U S A. 1989 Nov;86(21):8222-6.

41.

Prediction of operator-binding protein by discriminant analysis.

Nakata K, Maizel JV Jr.

Gene Anal Tech. 1989 Nov-Dec;6(6):111-9.

PMID:
2606442
42.

Tree graphs of RNA secondary structures and their comparisons.

Le SY, Nussinov R, Maizel JV.

Comput Biomed Res. 1989 Oct;22(5):461-73.

PMID:
2776449
43.

Comparative analysis of the HTLV-I Rex and HIV-1 Rev trans-regulatory proteins and their RNA response elements.

Hanly SM, Rimsky LT, Malim MH, Kim JH, Hauber J, Duc Dodon M, Le SY, Maizel JV, Cullen BR, Greene WC.

Genes Dev. 1989 Oct;3(10):1534-44.

45.

RNA secondary structures: comparison and determination of frequently recurring substructures by consensus.

Le SY, Owens J, Nussinov R, Chen JH, Shapiro B, Maizel JV.

Comput Appl Biosci. 1989 Jul;5(3):205-10.

PMID:
2475224
46.

Detection of common motifs in RNA secondary structures.

Margalit H, Shapiro BA, Oppenheim AB, Maizel JV Jr.

Nucleic Acids Res. 1989 Jun 26;17(12):4829-45.

47.

A method for assessing the statistical significance of RNA folding.

Le SY, Maizel JV Jr.

J Theor Biol. 1989 Jun 22;138(4):495-510.

PMID:
2480496
48.
49.

The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA.

Malim MH, Hauber J, Le SY, Maizel JV, Cullen BR.

Nature. 1989 Mar 16;338(6212):254-7.

PMID:
2784194
50.

Discriminant analysis of promoter regions in Escherichia coli sequences.

Nakata K, Kanehisa M, Maizel JV Jr.

Comput Appl Biosci. 1988 Aug;4(3):367-71.

PMID:
3046714

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