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Items: 5

1.

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.

Baichoo S, Souilmi Y, Panji S, Botha G, Meintjes A, Hazelhurst S, Bendou H, Beste E, Mpangase PT, Souiai O, Alghali M, Yi L, O'Connor BD, Crusoe M, Armstrong D, Aron S, Joubert F, Ahmed AE, Mbiyavanga M, Heusden PV, Magosi LE, Zermeno J, Mainzer LS, Fadlelmola FM, Jongeneel CV, Mulder N.

BMC Bioinformatics. 2018 Nov 29;19(1):457. doi: 10.1186/s12859-018-2446-1.

2.

An assessment of true and false positive detection rates of stepwise epistatic model selection as a function of sample size and number of markers.

Chen AH, Ge W, Metcalf W, Jakobsson E, Mainzer LS, Lipka AE.

Heredity (Edinb). 2018 Nov 15. doi: 10.1038/s41437-018-0162-2. [Epub ahead of print]

PMID:
30443009
3.

Identification of missing variants by combining multiple analytic pipelines.

Ren Y, Reddy JS, Pottier C, Sarangi V, Tian S, Sinnwell JP, McDonnell SK, Biernacka JM, Carrasquillo MM, Ross OA, Ertekin-Taner N, Rademakers R, Hudson M, Mainzer LS, Asmann YW.

BMC Bioinformatics. 2018 Apr 16;19(1):139. doi: 10.1186/s12859-018-2151-0.

4.

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

Jongeneel CV, Achinike-Oduaran O, Adebiyi E, Adebiyi M, Adeyemi S, Akanle B, Aron S, Ashano E, Bendou H, Botha G, Chimusa E, Choudhury A, Donthu R, Drnevich J, Falola O, Fields CJ, Hazelhurst S, Hendry L, Isewon I, Khetani RS, Kumuthini J, Kimuda MP, Magosi L, Mainzer LS, Maslamoney S, Mbiyavanga M, Meintjes A, Mugutso D, Mpangase P, Munthali R, Nembaware V, Ndhlovu A, Odia T, Okafor A, Oladipo O, Panji S, Pillay V, Rendon G, Sengupta D, Mulder N.

PLoS Comput Biol. 2017 Jun 1;13(6):e1005419. doi: 10.1371/journal.pcbi.1005419. eCollection 2017 Jun.

5.

Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models.

Stephens ZD, Hudson ME, Mainzer LS, Taschuk M, Weber MR, Iyer RK.

PLoS One. 2016 Nov 28;11(11):e0167047. doi: 10.1371/journal.pone.0167047. eCollection 2016.

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