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A roadmap for research in octoploid strawberry.

Whitaker VM, Knapp SJ, Hardigan MA, Edger PP, Slovin JP, Bassil NV, Hytönen T, Mackenzie KK, Lee S, Jung S, Main D, Barbey CR, Verma S.

Hortic Res. 2020 Mar 15;7:33. doi: 10.1038/s41438-020-0252-1. eCollection 2020. Review.


Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.

Buble K, Jung S, Humann JL, Yu J, Cheng CH, Lee T, Ficklin SP, Hough H, Condon B, Staton ME, Wegrzyn JL, Main D.

Database (Oxford). 2019 Jan 1;2019. pii: baz100. doi: 10.1093/database/baz100.


A reference genome for pea provides insight into legume genome evolution.

Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J.

Nat Genet. 2019 Sep;51(9):1411-1422. doi: 10.1038/s41588-019-0480-1. Epub 2019 Sep 2.


To change or not to change? Veterinarian and farmer perceptions of relational factors influencing the enactment of veterinary advice on dairy farms in the United Kingdom.

Bard AM, Main D, Roe E, Haase A, Whay HR, Reyher KK.

J Dairy Sci. 2019 Nov;102(11):10379-10394. doi: 10.3168/jds.2019-16364. Epub 2019 Aug 22.


Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.

Spoor S, Cheng CH, Sanderson LA, Condon B, Almsaeed A, Chen M, Bretaudeau A, Rasche H, Jung S, Main D, Bett K, Staton M, Wegrzyn JL, Feltus FA, Ficklin SP.

Database (Oxford). 2019 Jan 1;2019. pii: baz077. doi: 10.1093/database/baz077.


Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.

Wegrzyn JL, Staton MA, Street NR, Main D, Grau E, Herndon N, Buehler S, Falk T, Zaman S, Ramnath R, Richter P, Sun L, Condon B, Almsaeed A, Chen M, Mannapperuma C, Jung S, Ficklin S.

Front Plant Sci. 2019 Jun 25;10:813. doi: 10.3389/fpls.2019.00813. eCollection 2019.


'Would it sell more pork?' Pig farmers' perceptions of Real Welfare, the welfare outcome component of their farm assurance scheme.

Hockenhull J, Main DCJ, Mullan S.

Animal. 2019 Dec;13(12):2864-2875. doi: 10.1017/S1751731119000946. Epub 2019 May 20.


Advanced Imaging for Quantitative Evaluation of Aphanomyces Root Rot Resistance in Lentil.

Marzougui A, Ma Y, Zhang C, McGee RJ, Coyne CJ, Main D, Sankaran S.

Front Plant Sci. 2019 Apr 16;10:383. doi: 10.3389/fpls.2019.00383. eCollection 2019.


Structural and Functional Annotation of Eukaryotic Genomes with GenSAS.

Humann JL, Lee T, Ficklin S, Main D.

Methods Mol Biol. 2019;1962:29-51. doi: 10.1007/978-1-4939-9173-0_3.


Apple whole genome sequences: recent advances and new prospects.

Peace CP, Bianco L, Troggio M, van de Weg E, Howard NP, Cornille A, Durel CE, Myles S, Migicovsky Z, Schaffer RJ, Costes E, Fazio G, Yamane H, van Nocker S, Gottschalk C, Costa F, Chagné D, Zhang X, Patocchi A, Gardiner SE, Hardner C, Kumar S, Laurens F, Bucher E, Main D, Jung S, Vanderzande S.

Hortic Res. 2019 Apr 5;6:59. doi: 10.1038/s41438-019-0141-7. eCollection 2019. Review.


Growing and cultivating the forest genomics database, TreeGenes.

Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.

Database (Oxford). 2019 Jan 1;2019. pii: baz043. doi: 10.1093/database/baz043. No abstract available.


HENNOVATION: Learnings from Promoting Practice-Led Multi-Actor Innovation Networks to Address Complex Animal Welfare Challenges within the Laying Hen Industry.

van Dijk L, Buller HJ, Blokhuis HJ, van Niekerk T, Voslarova E, Manteca X, Weeks CA, Main DCJ.

Animals (Basel). 2019 Jan 11;9(1). pii: E24. doi: 10.3390/ani9010024.


15 years of GDR: New data and functionality in the Genome Database for Rosaceae.

Jung S, Lee T, Cheng CH, Buble K, Zheng P, Yu J, Humann J, Ficklin SP, Gasic K, Scott K, Frank M, Ru S, Hough H, Evans K, Peace C, Olmstead M, DeVetter LW, McFerson J, Coe M, Wegrzyn JL, Staton ME, Abbott AG, Main D.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1137-D1145. doi: 10.1093/nar/gky1000.


AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay088.


Growing and cultivating the forest genomics database, TreeGenes.

Falk T, Herndon N, Grau E, Buehler S, Richter P, Zaman S, Baker EM, Ramnath R, Ficklin S, Staton M, Feltus FA, Jung S, Main D, Wegrzyn JL.

Database (Oxford). 2018 Jan 1;2018:1-11. doi: 10.1093/database/bay084. Erratum in: Database (Oxford). 2019 Jan 1;2019:.


Rocky Secret.

Main D.

Sci Am. 2018 Jun 19;319(1):14-17. doi: 10.1038/scientificamerican0718-14. No abstract available.


Herpes Simplex Virus 1 Inhibits TANK-Binding Kinase 1 through Formation of the Us11-Hsp90 Complex.

Liu X, Main D, Ma Y, He B.

J Virol. 2018 Jun 29;92(14). pii: e00402-18. doi: 10.1128/JVI.00402-18. Print 2018 Jul 15.


Optimising lameness detection in dairy cattle by using handheld infrared thermometers.

Lin YC, Mullan S, Main DCJ.

Vet Med Sci. 2018 Apr 29. doi: 10.1002/vms3.104. [Epub ahead of print]


Orangutan Medicine.

Main D.

Sci Am. 2018 Apr 17;318(5):22-23. doi: 10.1038/scientificamerican0518-22a. No abstract available.


Use of welfare outcome information in three types of dairy farm inspection reports.

Lin YC, Mullan S, Main DCJ.

Asian-Australas J Anim Sci. 2018 Sep;31(9):1525-1534. doi: 10.5713/ajas.17.0851. Epub 2018 Apr 12.


Fishy Behemoth.

Main D.

Sci Am. 2018 Feb 20;318(3):21. doi: 10.1038/scientificamerican0318-21. No abstract available.


Salmon Sex Moves Mountains.

Main D.

Sci Am. 2018 Jan 16;318(2):14. doi: 10.1038/scientificamerican0218-14a. No abstract available.


Implicit Gender Bias and the Use of Cardiovascular Tests Among Cardiologists.

Daugherty SL, Blair IV, Havranek EP, Furniss A, Dickinson LM, Karimkhani E, Main DS, Masoudi FA.

J Am Heart Assoc. 2017 Nov 29;6(12). pii: e006872. doi: 10.1161/JAHA.117.006872.


Smoky Wine.

Main D.

Sci Am. 2017 Nov 14;317(6):17. doi: 10.1038/scientificamerican1217-17. No abstract available.


Associations of Adolescent Weight Status and Meeting National Obesity-Related Recommendations.

Cook JA, McCormick EV, Mickiewicz TE, Davidson AJ, Main DS.

J Sch Health. 2017 Dec;87(12):923-931. doi: 10.1111/josh.12564.


Induced Mutagenesis in UGT74S1 Gene Leads to Stable New Flax Lines with Altered Secoisolariciresinol Diglucoside (SDG) Profiles.

Fofana B, Ghose K, Somalraju A, McCallum J, Main D, Deyholos MK, Rowland GG, Cloutier S.

Front Plant Sci. 2017 Sep 21;8:1638. doi: 10.3389/fpls.2017.01638. eCollection 2017.


A Pre-Post Evaluation of OpenMinds: a Sustainable, Peer-Led Mental Health Literacy Programme in Universities and Secondary Schools.

Patalay P, Annis J, Sharpe H, Newman R, Main D, Ragunathan T, Parkes M, Clarke K.

Prev Sci. 2017 Nov;18(8):995-1005. doi: 10.1007/s11121-017-0840-y.


Understanding Social Isolation Among Urban Aging Adults: Informing Occupation-Based Approaches.

Hand C, Retrum J, Ware G, Iwasaki P, Moaalii G, Main DS.

OTJR (Thorofare N J). 2017 Oct;37(4):188-198. doi: 10.1177/1539449217727119. Epub 2017 Aug 31.


A new era of UK leadership in farm animal welfare.

Main D, Mullan S.

Vet Rec. 2017 Jul 7;181(2):49-50. doi: 10.1136/vr.j3273. No abstract available.


Speciation in fractured rock landforms: towards understanding the diversity of subterranean cockroaches (Dictyoptera: Nocticolidae: <i>Nocticola</i>) in Western Australia.

Trotter AJ, McRAE JM, Main DC, Finston TL.

Zootaxa. 2017 Apr 4;4250(2):143-170. doi: 10.11646/zootaxa.4250.2.2.


Histological characteristics of knee menisci in patients with osteoarthritis.

McDaniel D, Tilton E, Dominick K, Flory K, Ernest T, Johnson JC, Main DC, Kondrashov P.

Clin Anat. 2017 Sep;30(6):805-810. doi: 10.1002/ca.22920. Epub 2017 Jun 15.


The future of veterinary communication: Partnership or persuasion? A qualitative investigation of veterinary communication in the pursuit of client behaviour change.

Bard AM, Main DC, Haase AM, Whay HR, Roe EJ, Reyher KK.

PLoS One. 2017 Mar 3;12(3):e0171380. doi: 10.1371/journal.pone.0171380. eCollection 2017.


Students' beliefs in animal sentience: no decline across veterinary education.

Clarke N, Main DC, Paul ES.

Vet Rec. 2017 Apr 15;180(15):378. doi: 10.1136/vr.104165. Epub 2017 Feb 17. No abstract available.


Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.).

Ma Y, Coyne CJ, Grusak MA, Mazourek M, Cheng P, Main D, McGee RJ.

BMC Plant Biol. 2017 Feb 13;17(1):43. doi: 10.1186/s12870-016-0956-4.


Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases.

Jung S, Lee T, Cheng CH, Ficklin S, Yu J, Humann J, Main D.

Database (Oxford). 2017 Jan 1;2017. pii: bax092. doi: 10.1093/database/bax092.


Participatory Policy Making by Dairy Producers to Reduce Anti-Microbial use on Farms.

van Dijk L, Hayton A, Main DCJ, Booth A, King A, Barrett DC, Buller HJ, Reyher KK.

Zoonoses Public Health. 2017 Sep;64(6):476-484. doi: 10.1111/zph.12329. Epub 2016 Dec 27.


Assessment of unnecessary suffering.

Main D, Mullan S, Baumgaertner H.

Vet Rec. 2016 Nov 12;179(19):496. doi: 10.1136/vr.i5987. No abstract available.


Assessment of unnecessary suffering in animals by veterinary experts.

Baumgaertner H, Mullan S, Main DC.

Vet Rec. 2016 Sep 24;179(12):307. doi: 10.1136/vr.103633. Epub 2016 Jun 28.


Modeling of genetic gain for single traits from marker-assisted seedling selection in clonally propagated crops.

Ru S, Hardner C, Carter PA, Evans K, Main D, Peace C.

Hortic Res. 2016 Apr 20;3:16015. doi: 10.1038/hortres.2016.15. eCollection 2016.


Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.

Jung S, Lee T, Ficklin S, Yu J, Cheng CH, Main D.

Database (Oxford). 2016 May 2;2016. pii: baw058. doi: 10.1093/database/baw058. Print 2016. No abstract available.


Mechanical testing and modelling of the Universal 2 implant.

Gislason MK, Foster E, Main D, Fusiek G, Niewczas P, Bransby-Zachary M, Nash DH.

Med Eng Phys. 2016 Jun;38(6):511-7. doi: 10.1016/j.medengphy.2016.02.008. Epub 2016 Apr 12.


Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.

Jung S, Lee T, Ficklin S, Yu J, Cheng CH, Main D.

Database (Oxford). 2016 Mar 17;2016. pii: baw010. doi: 10.1093/database/baw010. Print 2016. Erratum in: Database (Oxford). 2016;2016. pii: baw058. doi: 10.1093/database/baw058.


Body Mass Transitions Through Childhood and Early Adolescence: A Multistate Life Table Approach.

Tran MK, Krueger PM, McCormick E, Davidson A, Main DS.

Am J Epidemiol. 2016 Apr 1;183(7):643-9. doi: 10.1093/aje/kwv233. Epub 2016 Mar 16.


Barriers and Facilitators to Scaling Up Outpatient Palliative Care.

Bekelman DB, Rabin BA, Nowels CT, Sahay A, Heidenreich PA, Fischer SM, Main DS.

J Palliat Med. 2016 Apr;19(4):456-9. doi: 10.1089/jpm.2015.0280. Epub 2016 Mar 14.


Genotyping-by-sequencing-based genome-wide association studies on Verticillium wilt resistance in autotetraploid alfalfa (Medicago sativa L.).

Yu LX, Zheng P, Zhang T, Rodringuez J, Main D.

Mol Plant Pathol. 2017 Feb;18(2):187-194. doi: 10.1111/mpp.12389. Epub 2016 Jul 10.


Sequencing-based high throughput mutation detection in bread wheat.

Sidhu G, Mohan A, Zheng P, Dhaliwal AK, Main D, Gill KS.

BMC Genomics. 2015 Nov 17;16:962. doi: 10.1186/s12864-015-2112-1.


Identification of Loci Associated with Drought Resistance Traits in Heterozygous Autotetraploid Alfalfa (Medicago sativa L.) Using Genome-Wide Association Studies with Genotyping by Sequencing.

Zhang T, Yu LX, Zheng P, Li Y, Rivera M, Main D, Greene SL.

PLoS One. 2015 Sep 25;10(9):e0138931. doi: 10.1371/journal.pone.0138931. eCollection 2015.


Sequential sampling: a novel method in farm animal welfare assessment.

Heath CA, Main DC, Mullan S, Haskell MJ, Browne WJ.

Animal. 2016 Feb;10(2):349-56. doi: 10.1017/S1751731115001536. Epub 2015 Aug 12.


Do codes of conduct matter?

Main DC.

Vet Rec. 2015 Jun 20;176(25):652-3. doi: 10.1136/vr.h3202. No abstract available.


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