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Items: 38

1.

CXCR4 signaling directs Igk recombination and the molecular mechanisms of late B lymphopoiesis.

Mandal M, Okoreeh MK, Kennedy DE, Maienschein-Cline M, Ai J, McLean KC, Kaverina N, Veselits M, Aifantis I, Gounari F, Clark MR.

Nat Immunol. 2019 Oct;20(10):1393-1403. doi: 10.1038/s41590-019-0468-0. Epub 2019 Sep 2.

PMID:
31477919
2.

Somatic variants of potential clinical significance in the tumors of BRCA phenocopies.

Buckingham L, Mitchell R, Maienschein-Cline M, Green S, Hu VH, Cobleigh M, Rotmensch J, Burgess K, Usha L.

Hered Cancer Clin Pract. 2019 Jul 16;17:21. doi: 10.1186/s13053-019-0117-5. eCollection 2019.

3.

Analysis of biological networks in the endothelium with biomimetic microsystem platform.

Kruse K, Klomp J, Sun M, Chen Z, Santana D, Huang F, Kanabar P, Maienschein-Cline M, Komarova YA.

Am J Physiol Lung Cell Mol Physiol. 2019 Sep 1;317(3):L392-L401. doi: 10.1152/ajplung.00392.2018. Epub 2019 Jul 17.

PMID:
31313617
4.

Complete Genome Sequence of Streptococcus pneumoniae Serotype 19F Strain EF3030.

Junges R, Maienschein-Cline M, Morrison DA, Petersen FC.

Microbiol Resour Announc. 2019 May 9;8(19). pii: e00198-19. doi: 10.1128/MRA.00198-19.

5.

Genome Sequence of Marine-Derived Streptomyces sp. Strain F001, a Producer of Akashin A and Diazaquinomycins.

Braesel J, Clark CM, Kunstman KJ, Green SJ, Maienschein-Cline M, Murphy BT, Eustáquio AS.

Microbiol Resour Announc. 2019 May 9;8(19). pii: e00165-19. doi: 10.1128/MRA.00165-19.

6.

The NASA Twins Study: A multidimensional analysis of a year-long human spaceflight.

Garrett-Bakelman FE, Darshi M, Green SJ, Gur RC, Lin L, Macias BR, McKenna MJ, Meydan C, Mishra T, Nasrini J, Piening BD, Rizzardi LF, Sharma K, Siamwala JH, Taylor L, Vitaterna MH, Afkarian M, Afshinnekoo E, Ahadi S, Ambati A, Arya M, Bezdan D, Callahan CM, Chen S, Choi AMK, Chlipala GE, Contrepois K, Covington M, Crucian BE, De Vivo I, Dinges DF, Ebert DJ, Feinberg JI, Gandara JA, George KA, Goutsias J, Grills GS, Hargens AR, Heer M, Hillary RP, Hoofnagle AN, Hook VYH, Jenkinson G, Jiang P, Keshavarzian A, Laurie SS, Lee-McMullen B, Lumpkins SB, MacKay M, Maienschein-Cline MG, Melnick AM, Moore TM, Nakahira K, Patel HH, Pietrzyk R, Rao V, Saito R, Salins DN, Schilling JM, Sears DD, Sheridan CK, Stenger MB, Tryggvadottir R, Urban AE, Vaisar T, Van Espen B, Zhang J, Ziegler MG, Zwart SR, Charles JB, Kundrot CE, Scott GBI, Bailey SM, Basner M, Feinberg AP, Lee SMC, Mason CE, Mignot E, Rana BK, Smith SM, Snyder MP, Turek FW.

Science. 2019 Apr 12;364(6436). pii: eaau8650. doi: 10.1126/science.aau8650.

PMID:
30975860
7.

Complete Genome Sequence of a USA100 Methicillin-Resistant Staphylococcus aureus Strain.

Chlipala GE, Lei ZA, Maienschein-Cline M, Kunstman K, Okamoto K, Green SJ, Popovich KJ.

Microbiol Resour Announc. 2019 Mar 14;8(11). pii: e00006-19. doi: 10.1128/MRA.00006-19.

8.

Complete Genome Sequence of Sulfitobacter sp. Strain D7, a Virulent Bacterium Isolated from an Emiliania huxleyi Algal Bloom in the North Atlantic.

Ku C, Barak-Gavish N, Maienschein-Cline M, Green SJ, Vardi A.

Microbiol Resour Announc. 2018 Nov 15;7(19). pii: e01379-18. doi: 10.1128/MRA.01379-18. eCollection 2018 Nov.

9.

TCF-1 and HEB cooperate to establish the epigenetic and transcription profiles of CD4+CD8+ thymocytes.

Emmanuel AO, Arnovitz S, Haghi L, Mathur PS, Mondal S, Quandt J, Okoreeh MK, Maienschein-Cline M, Khazaie K, Dose M, Gounari F.

Nat Immunol. 2018 Dec;19(12):1366-1378. doi: 10.1038/s41590-018-0254-4. Epub 2018 Nov 12.

10.

BRWD1 orchestrates epigenetic landscape of late B lymphopoiesis.

Mandal M, Maienschein-Cline M, Maffucci P, Veselits M, Kennedy DE, McLean KC, Okoreeh MK, Karki S, Cunningham-Rundles C, Clark MR.

Nat Commun. 2018 Sep 24;9(1):3888. doi: 10.1038/s41467-018-06165-6.

11.

Regulated Capture of Vκ Gene Topologically Associating Domains by Transcription Factories.

Karki S, Kennedy DE, Mclean K, Grzybowski AT, Maienschein-Cline M, Banerjee S, Xu H, Davis E, Mandal M, Labno C, Powers SE, Le Beau MM, Dinner AR, Singh H, Ruthenburg AJ, Clark MR.

Cell Rep. 2018 Aug 28;24(9):2443-2456. doi: 10.1016/j.celrep.2018.07.091.

12.

Complete Genome of Micromonospora sp. Strain B006 Reveals Biosynthetic Potential of a Lake Michigan Actinomycete.

Braesel J, Crnkovic CM, Kunstman KJ, Green SJ, Maienschein-Cline M, Orjala J, Murphy BT, Eustáquio AS.

J Nat Prod. 2018 Sep 28;81(9):2057-2068. doi: 10.1021/acs.jnatprod.8b00394. Epub 2018 Aug 15.

13.

Transcription factor ID2 prevents E proteins from enforcing a naïve T lymphocyte gene program during NK cell development.

Zook EC, Li ZY, Xu Y, de Pooter RF, Verykokakis M, Beaulieu A, Lasorella A, Maienschein-Cline M, Sun JC, Sigvardsson M, Kee BL.

Sci Immunol. 2018 Apr 27;3(22). pii: eaao2139. doi: 10.1126/sciimmunol.aao2139.

14.

Cardiac Progenitors Induced from Human Induced Pluripotent Stem Cells with Cardiogenic Small Molecule Effectively Regenerate Infarcted Hearts and Attenuate Fibrosis.

Xuan W, Wang Y, Tang Y, Ali A, Hu H, Maienschein-Cline M, Ashraf M.

Shock. 2018 Dec;50(6):627-639. doi: 10.1097/SHK.0000000000001133.

15.

A Vaginal Tract Signal Detected by the Group B Streptococcus SaeRS System Elicits Transcriptomic Changes and Enhances Murine Colonization.

Cook LCC, Hu H, Maienschein-Cline M, Federle MJ.

Infect Immun. 2018 Mar 22;86(4). pii: e00762-17. doi: 10.1128/IAI.00762-17. Print 2018 Apr.

16.

The IRF4 Gene Regulatory Module Functions as a Read-Write Integrator to Dynamically Coordinate T Helper Cell Fate.

Krishnamoorthy V, Kannanganat S, Maienschein-Cline M, Cook SL, Chen J, Bahroos N, Sievert E, Corse E, Chong A, Sciammas R.

Immunity. 2017 Sep 19;47(3):481-497.e7. doi: 10.1016/j.immuni.2017.09.001.

17.

Expression profiling of genes regulated by sphingosine kinase1 signaling in a murine model of hyperoxia induced neonatal bronchopulmonary dysplasia.

Natarajan V, Ha AW, Dong Y, Reddy NM, Ebenezer DL, Kanteti P, Reddy SP, Usha Raj J, Lei Z, Maienschein-Cline M, Arbieva Z, Harijith A.

BMC Genomics. 2017 Aug 29;18(1):664. doi: 10.1186/s12864-017-4048-0.

18.

Genome-centric evaluation of Burkholderia sp. strain SRS-W-2-2016 resistant to high concentrations of uranium and nickel isolated from the Savannah River Site (SRS), USA.

Pathak A, Chauhan A, Stothard P, Green S, Maienschein-Cline M, Jaswal R, Seaman J.

Genom Data. 2017 Feb 27;12:62-68. doi: 10.1016/j.gdata.2017.02.011. eCollection 2017 Jun.

19.

Association of circulating transcriptomic profiles with mortality in sickle cell disease.

Desai AA, Lei Z, Bahroos N, Maienschein-Cline M, Saraf SL, Zhang X, Shah BN, Nouraie SM, Abbasi T, Patel AR, Lang RM, Lussier Y, Garcia JGN, Gordeuk VR, Machado RF.

Blood. 2017 Jun 1;129(22):3009-3016. doi: 10.1182/blood-2016-11-752279. Epub 2017 Apr 3.

20.

Hepatic deficiency of the pioneer transcription factor FoxA restricts hepatitis B virus biosynthesis by the developmental regulation of viral DNA methylation.

McFadden VC, Shalaby RE, Iram S, Oropeza CE, Landolfi JA, Lyubimov AV, Maienschein-Cline M, Green SJ, Kaestner KH, McLachlan A.

PLoS Pathog. 2017 Feb 24;13(2):e1006239. doi: 10.1371/journal.ppat.1006239. eCollection 2017 Feb.

21.

Human Lacrimal Gland Gene Expression.

Aakalu VK, Parameswaran S, Maienschein-Cline M, Bahroos N, Shah D, Ali M, Krishnakumar S.

PLoS One. 2017 Jan 12;12(1):e0169346. doi: 10.1371/journal.pone.0169346. eCollection 2017.

22.

Nitric Oxide Regulates Gene Expression in Cancers by Controlling Histone Posttranslational Modifications.

Vasudevan D, Hickok JR, Bovee RC, Pham V, Mantell LL, Bahroos N, Kanabar P, Cao XJ, Maienschein-Cline M, Garcia BA, Thomas DD.

Cancer Res. 2015 Dec 15;75(24):5299-308. doi: 10.1158/0008-5472.CAN-15-1582. Epub 2015 Nov 5.

23.

Histone reader BRWD1 targets and restricts recombination to the Igk locus.

Mandal M, Hamel KM, Maienschein-Cline M, Tanaka A, Teng G, Tuteja JH, Bunker JJ, Bahroos N, Eppig JJ, Schatz DG, Clark MR.

Nat Immunol. 2015 Oct;16(10):1094-103. doi: 10.1038/ni.3249. Epub 2015 Aug 24.

24.

Improved statistical methods enable greater sensitivity in rhythm detection for genome-wide data.

Hutchison AL, Maienschein-Cline M, Chiang AH, Tabei SM, Gudjonson H, Bahroos N, Allada R, Dinner AR.

PLoS Comput Biol. 2015 Mar 20;11(3):e1004094. doi: 10.1371/journal.pcbi.1004094. eCollection 2015 Mar.

25.

APOE-modulated Aβ-induced neuroinflammation in Alzheimer's disease: current landscape, novel data, and future perspective.

Tai LM, Ghura S, Koster KP, Liakaite V, Maienschein-Cline M, Kanabar P, Collins N, Ben-Aissa M, Lei AZ, Bahroos N, Green SJ, Hendrickson B, Van Eldik LJ, LaDu MJ.

J Neurochem. 2015 May;133(4):465-88. doi: 10.1111/jnc.13072. Epub 2015 Mar 18. Review.

26.

Vimentin is a dominant target of in situ humoral immunity in human lupus tubulointerstitial nephritis.

Kinloch AJ, Chang A, Ko K, Henry Dunand CJ, Henderson S, Maienschein-Cline M, Kaverina N, Rovin BH, Salgado Ferrer M, Wolfgeher D, Liarski V, Haddon DJ, Utz PJ, Wilson PC, Clark MR.

Arthritis Rheumatol. 2014 Dec;66(12):3359-70. doi: 10.1002/art.38888.

27.

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine.

Gardeux V, Achour I, Li J, Maienschein-Cline M, Li H, Pesce L, Parinandi G, Bahroos N, Winn R, Foster I, Garcia JG, Lussier YA.

J Am Med Inform Assoc. 2014 Nov-Dec;21(6):1015-25. doi: 10.1136/amiajnl-2013-002519. Epub 2014 Jun 12.

28.

ARTS: automated randomization of multiple traits for study design.

Maienschein-Cline M, Lei Z, Gardeux V, Abbasi T, Machado RF, Gordeuk V, Desai AA, Saraf S, Bahroos N, Lussier Y.

Bioinformatics. 2014 Jun 1;30(11):1637-9. doi: 10.1093/bioinformatics/btu075. Epub 2014 Feb 3.

29.

Conquering computational challenges of omics data and post-ENCODE paradigms.

Lussier YA, Li H, Maienschein-Cline M.

Genome Biol. 2013 Aug 23;14(8):310. doi: 10.1186/gb-2013-14-8-310.

30.

Transcriptional regulation of germinal center B and plasma cell fates by dynamical control of IRF4.

Ochiai K, Maienschein-Cline M, Simonetti G, Chen J, Rosenthal R, Brink R, Chong AS, Klein U, Dinner AR, Singh H, Sciammas R.

Immunity. 2013 May 23;38(5):918-29. doi: 10.1016/j.immuni.2013.04.009. Epub 2013 May 16.

31.

Improved predictions of transcription factor binding sites using physicochemical features of DNA.

Maienschein-Cline M, Dinner AR, Hlavacek WS, Mu F.

Nucleic Acids Res. 2012 Dec;40(22):e175. doi: 10.1093/nar/gks771. Epub 2012 Aug 25.

32.

A self-reinforcing regulatory network triggered by limiting IL-7 activates pre-BCR signaling and differentiation.

Ochiai K, Maienschein-Cline M, Mandal M, Triggs JR, Bertolino E, Sciammas R, Dinner AR, Clark MR, Singh H.

Nat Immunol. 2012 Jan 22;13(3):300-7. doi: 10.1038/ni.2210.

33.

Discovering transcription factor regulatory targets using gene expression and binding data.

Maienschein-Cline M, Zhou J, White KP, Sciammas R, Dinner AR.

Bioinformatics. 2012 Jan 15;28(2):206-13. doi: 10.1093/bioinformatics/btr628. Epub 2011 Nov 13.

34.

Epigenetic repression of the Igk locus by STAT5-mediated recruitment of the histone methyltransferase Ezh2.

Mandal M, Powers SE, Maienschein-Cline M, Bartom ET, Hamel KM, Kee BL, Dinner AR, Clark MR.

Nat Immunol. 2011 Oct 30;12(12):1212-20. doi: 10.1038/ni.2136.

35.

Flow-Dependent Unfolding and Refolding of an RNA by Nonequilibrium Umbrella Sampling.

Dickson A, Maienschein-Cline M, Tovo-Dwyer A, Hammond JR, Dinner AR.

J Chem Theory Comput. 2011 Sep 13;7(9):2710-20. doi: 10.1021/ct200371n. Epub 2011 Aug 23.

PMID:
26605464
36.

Defining cooperativity in gene regulation locally through intrinsic noise.

Maienschein-Cline M, Warmflash A, Dinner AR.

IET Syst Biol. 2010 Nov;4(6):379-92. doi: 10.1049/iet-syb.2009.0070.

37.

The CN stretching band of aliphatic thiocyanate is sensitive to solvent dynamics and specific solvation.

Maienschein-Cline MG, Londergan CH.

J Phys Chem A. 2007 Oct 11;111(40):10020-5. Epub 2007 Sep 15.

PMID:
17867661
38.

Determining the partial photoionization cross-sections of ethyl radicals.

FitzPatrick BL, Maienschein-Cline M, Butler LJ, Lee SH, Lin JJ.

J Phys Chem A. 2007 Dec 13;111(49):12417-22. Epub 2007 Aug 31.

PMID:
17760439

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