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Three distinct glycosylation pathways are involved in the decoration of Lactococcus lactis cell wall glycopolymers.

Theodorou I, Courtin P, Sadovskaya I, Palussière S, Fenaille F, Mahony J, Chapot-Chartier MP, van Sinderen D.

J Biol Chem. 2020 Mar 13. pii: jbc.RA119.010844. doi: 10.1074/jbc.RA119.010844. [Epub ahead of print]


A cell wall-associated polysaccharide is required for bacteriophage adsorption to the Streptococcus thermophilus cell surface.

McDonnell B, Hanemaaijer L, Bottacini F, Kelleher P, Lavelle K, Sadovskaya I, Vinogradov E, Ver Loren van Themaat E, Kouwen T, Mahony J, van Sinderen D.

Mol Microbiol. 2020 Feb 19. doi: 10.1111/mmi.14494. [Epub ahead of print]


The Impact and Applications of Phages in the Food Industry and Agriculture.

Mahony J, Casey E, van Sinderen D.

Viruses. 2020 Feb 13;12(2). pii: E210. doi: 10.3390/v12020210.


A Plasmid-Encoded Putative Glycosyltransferase Is Involved in Hop Tolerance and Beer Spoilage in Lactobacillus brevis.

Feyereisen M, Mahony J, O'Sullivan T, Boer V, van Sinderen D.

Appl Environ Microbiol. 2020 Jan 21;86(3). pii: e02268-19. doi: 10.1128/AEM.02268-19. Print 2020 Jan 21.


Biodiversity and Classification of Phages Infecting Lactobacillus brevis.

Feyereisen M, Mahony J, Neve H, Franz CMAP, Noben JP, O'Sullivan T, Boer V, van Sinderen D.

Front Microbiol. 2019 Oct 16;10:2396. doi: 10.3389/fmicb.2019.02396. eCollection 2019.


A dual-chain assembly pathway generates the high structural diversity of cell-wall polysaccharides in Lactococcus lactis.

Theodorou I, Courtin P, Palussière S, Kulakauskas S, Bidnenko E, Péchoux C, Fenaille F, Penno C, Mahony J, van Sinderen D, Chapot-Chartier MP.

J Biol Chem. 2019 Nov 15;294(46):17612-17625. doi: 10.1074/jbc.RA119.009957. Epub 2019 Oct 3.


A Quest of Great Importance-Developing a Broad Spectrum Escherichia coli Phage Collection.

Kaczorowska J, Casey E, Neve H, Franz CMAP, Noben JP, Lugli GA, Ventura M, Sinderen DV, Mahony J.

Viruses. 2019 Sep 26;11(10). pii: E899. doi: 10.3390/v11100899.


Enumeration of Viable Chlamydia from Infected Animals Using Immunofluorescent Microscopy.

Liang S, Mahony JB.

Methods Mol Biol. 2019;2042:237-244. doi: 10.1007/978-1-4939-9694-0_16.


Ubiquitous Carbohydrate Binding Modules Decorate 936 Lactococcal Siphophage Virions.

Hayes S, Mahony J, Vincentelli R, Ramond L, Nauta A, van Sinderen D, Cambillau C.

Viruses. 2019 Jul 9;11(7). pii: E631. doi: 10.3390/v11070631.


Comparative genome analysis of the Lactobacillus brevis species.

Feyereisen M, Mahony J, Kelleher P, Roberts RJ, O'Sullivan T, Geertman JA, van Sinderen D.

BMC Genomics. 2019 May 23;20(1):416. doi: 10.1186/s12864-019-5783-1.


Isolation and Characterization of Lactobacillus brevis Phages.

Feyereisen M, Mahony J, Lugli GA, Ventura M, Neve H, Franz CMAP, Noben JP, O'Sullivan T, Sinderen DV.

Viruses. 2019 Apr 26;11(5). pii: E393. doi: 10.3390/v11050393.


The Lactococcus lactis Pan-Plasmidome.

Kelleher P, Mahony J, Bottacini F, Lugli GA, Ventura M, van Sinderen D.

Front Microbiol. 2019 Apr 4;10:707. doi: 10.3389/fmicb.2019.00707. eCollection 2019.


Complete Genome Sequence of Lactococcus lactis subsp. cremoris 3107, Host for the Model Lactococcal P335 Bacteriophage TP901-1.

Erazo Garzon A, Mahony J, Bottacini F, Kelleher P, van Sinderen D.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01635-18. doi: 10.1128/MRA.01635-18. eCollection 2019 Jan.


Multiplexed detection and identification of respiratory pathogens using the NxTAG® respiratory pathogen panel.

Gonsalves S, Mahony J, Rao A, Dunbar S, Juretschko S.

Methods. 2019 Apr 1;158:61-68. doi: 10.1016/j.ymeth.2019.01.005. Epub 2019 Jan 17.


The Impact of Breast Care Nurses: An Evaluation of the McGrath Foundation's Breast Care Nurse Initiative.

Mahony J, Masters H, Townsend J, Hagerty F, Fodero L, Scuteri J, Doromal D.

Asia Pac J Oncol Nurs. 2019 Jan-Mar;6(1):28-34. doi: 10.4103/apjon.apjon_61_18.


Identification of Dual Receptor Binding Protein Systems in Lactococcal 936 Group Phages.

Hayes S, Duhoo Y, Neve H, Murphy J, Noben JP, Franz CMAP, Cambillau C, Mahony J, Nauta A, van Sinderen D.

Viruses. 2018 Nov 27;10(12). pii: E668. doi: 10.3390/v10120668.


Electrical Tweezer for Droplet Transportation, Extraction, Merging and DNA Analysis.

Shahid A, Chong S, Mahony J, Deen MJ, Selvaganapathy PR.

Micromachines (Basel). 2017 Nov 30;8(12). pii: E353. doi: 10.3390/mi8120353.


Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations.

Lavelle K, Martinez I, Neve H, Lugli GA, Franz CMAP, Ventura M, Bello FD, Sinderen DV, Mahony J.

Viruses. 2018 Oct 22;10(10). pii: E577. doi: 10.3390/v10100577.


Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria.

Hayes S, Vincentelli R, Mahony J, Nauta A, Ramond L, Lugli GA, Ventura M, van Sinderen D, Cambillau C.

Mol Microbiol. 2018 Dec;110(5):777-795. doi: 10.1111/mmi.14124. Epub 2018 Oct 30.


Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.

Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.

Sci Rep. 2018 Aug 24;8(1):12772. doi: 10.1038/s41598-018-31181-3.


Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.


Determination of the cell wall polysaccharide and teichoic acid structures from Lactococcus lactis IL1403.

Vinogradov E, Sadovskaya I, Courtin P, Kulakauskas S, Grard T, Mahony J, van Sinderen D, Chapot-Chartier MP.

Carbohydr Res. 2018 Jun 15;462:39-44. doi: 10.1016/j.carres.2018.04.002. Epub 2018 Apr 12.


In Vitro Characteristics of Phages to Guide 'Real Life' Phage Therapy Suitability.

Casey E, van Sinderen D, Mahony J.

Viruses. 2018 Mar 30;10(4). pii: E163. doi: 10.3390/v10040163. Review.


Structural studies of the cell wall polysaccharide from Lactococcus lactis UC509.9.

Vinogradov E, Sadovskaya I, Grard T, Murphy J, Mahony J, Chapot-Chartier MP, van Sinderen D.

Carbohydr Res. 2018 May 22;461:25-31. doi: 10.1016/j.carres.2018.03.011. Epub 2018 Mar 17.


Assessing the functionality and genetic diversity of lactococcal prophages.

Kelleher P, Mahony J, Schweinlin K, Neve H, Franz CM, van Sinderen D.

Int J Food Microbiol. 2018 May 2;272:29-40. doi: 10.1016/j.ijfoodmicro.2018.02.024. Epub 2018 Mar 1.


A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant.

Lavelle K, Murphy J, Fitzgerald B, Lugli GA, Zomer A, Neve H, Ventura M, Franz CM, Cambillau C, van Sinderen D, Mahony J.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02855-17. doi: 10.1128/AEM.02855-17. Print 2018 May 15.


Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin?

Mahony J, Lugli GA, van Sinderen D, Ventura M.

Appl Microbiol Biotechnol. 2018 Mar;102(5):2091-2099. doi: 10.1007/s00253-018-8795-x. Epub 2018 Feb 2. Review.


Generation of Bacteriophage-Insensitive Mutants of Streptococcus thermophilus via an Antisense RNA CRISPR-Cas Silencing Approach.

McDonnell B, Mahony J, Hanemaaijer L, Kouwen TRHM, van Sinderen D.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e01733-17. doi: 10.1128/AEM.01733-17. Print 2018 Feb 15.


Identification of DNA Base Modifications by Means of Pacific Biosciences RS Sequencing Technology.

Kelleher P, Murphy J, Mahony J, van Sinderen D.

Methods Mol Biol. 2018;1681:127-137. doi: 10.1007/978-1-4939-7343-9_10.


The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, Belzer C, Delgado Palacio S, Arboleya Montes S, Mancabelli L, Lugli GA, Rodriguez JM, Bode L, de Vos W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Microbiol Mol Biol Rev. 2017 Nov 8;81(4). pii: e00036-17. doi: 10.1128/MMBR.00036-17. Print 2017 Dec. Review.


Biodiversity of bacteriophages infecting Lactococcus lactis starter cultures.

Oliveira J, Mahony J, Hanemaaijer L, Kouwen TRHM, van Sinderen D.

J Dairy Sci. 2018 Jan;101(1):96-105. doi: 10.3168/jds.2017-13403. Epub 2017 Nov 2.


Glycan Utilization and Cross-Feeding Activities by Bifidobacteria.

Turroni F, Milani C, Duranti S, Mahony J, van Sinderen D, Ventura M.

Trends Microbiol. 2018 Apr;26(4):339-350. doi: 10.1016/j.tim.2017.10.001. Epub 2017 Oct 28. Review.


Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.

Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G.

Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702.


Plantaricyclin A, a Novel Circular Bacteriocin Produced by Lactobacillus plantarum NI326: Purification, Characterization, and Heterologous Production.

Borrero J, Kelly E, O'Connor PM, Kelleher P, Scully C, Cotter PD, Mahony J, van Sinderen D.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01801-17. doi: 10.1128/AEM.01801-17. Print 2018 Jan 1.


Low-cost and versatile integration of microwire electrodes and optical waveguides into silicone elastomeric devices using modified xurographic methods.

Liu J, Mahony JB, Selvaganapathy PR.

Microsyst Nanoeng. 2017 Oct 9;3:17040. doi: 10.1038/micronano.2017.40. eCollection 2017.


Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus.

McDonnell B, Mahony J, Hanemaaijer L, Neve H, Noben JP, Lugli GA, Ventura M, Kouwen TR, van Sinderen D.

Front Microbiol. 2017 Sep 12;8:1754. doi: 10.3389/fmicb.2017.01754. eCollection 2017.


Another Brick in the Wall: a Rhamnan Polysaccharide Trapped inside Peptidoglycan of Lactococcus lactis.

Sadovskaya I, Vinogradov E, Courtin P, Armalyte J, Meyrand M, Giaouris E, Palussière S, Furlan S, Péchoux C, Ainsworth S, Mahony J, van Sinderen D, Kulakauskas S, Guérardel Y, Chapot-Chartier MP.

mBio. 2017 Sep 12;8(5). pii: e01303-17. doi: 10.1128/mBio.01303-17.


Host recognition by lactic acid bacterial phages.

Mahony J, Cambillau C, van Sinderen D.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S16-S26. doi: 10.1093/femsre/fux019. Review.


Detecting Lactococcus lactis Prophages by Mitomycin C-Mediated Induction Coupled to Flow Cytometry Analysis.

Oliveira J, Mahony J, Hanemaaijer L, Kouwen TRHM, Neve H, MacSharry J, van Sinderen D.

Front Microbiol. 2017 Jul 19;8:1343. doi: 10.3389/fmicb.2017.01343. eCollection 2017.


Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.

Muhammed MK, Kot W, Neve H, Mahony J, Castro-Mejía JL, Krych L, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, van Sinderen D, Vogensen FK.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e00888-17. doi: 10.1128/AEM.00888-17. Print 2017 Oct 1.


Sputum autoantibodies in patients with severe eosinophilic asthma.

Mukherjee M, Bulir DC, Radford K, Kjarsgaard M, Huang CM, Jacobsen EA, Ochkur SI, Catuneanu A, Lamothe-Kipnes H, Mahony J, Lee JJ, Lacy P, Nair PK.

J Allergy Clin Immunol. 2018 Apr;141(4):1269-1279. doi: 10.1016/j.jaci.2017.06.033. Epub 2017 Jul 24.


Enteric bacteria of food ice and their survival in alcoholic beverages and soft drinks.

Gaglio R, Francesca N, Di Gerlando R, Mahony J, De Martino S, Stucchi C, Moschetti G, Settanni L.

Food Microbiol. 2017 Oct;67:17-22. doi: 10.1016/ Epub 2017 May 29.


Genome Sequence of Serratia marcescens Phage BF.

Casey E, Fitzgerald B, Mahony J, Lugli GA, Ventura M, van Sinderen D.

Genome Announc. 2017 Jun 8;5(23). pii: e00211-17. doi: 10.1128/genomeA.00211-17.


Multicenter Clinical Evaluation of the Luminex Aries Flu A/B & RSV Assay for Pediatric and Adult Respiratory Tract Specimens.

Juretschko S, Mahony J, Buller RS, Manji R, Dunbar S, Walker K, Rao A.

J Clin Microbiol. 2017 Aug;55(8):2431-2438. doi: 10.1128/JCM.00318-17. Epub 2017 May 24.


Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches.

Hayes S, Mahony J, Nauta A, van Sinderen D.

Viruses. 2017 May 24;9(6). pii: E127. doi: 10.3390/v9060127. Review.


Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads.

Pontonio E, Di Cagno R, Mahony J, Lanera A, De Angelis M, van Sinderen D, Gobbetti M.

Sci Rep. 2017 Apr 3;7(1):624. doi: 10.1038/s41598-017-00549-2.


Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation.

Kelleher P, Bottacini F, Mahony J, Kilcawley KN, van Sinderen D.

BMC Genomics. 2017 Mar 29;18(1):267. doi: 10.1186/s12864-017-3650-5.


Phage Biodiversity in Artisanal Cheese Wheys Reflects the Complexity of the Fermentation Process.

Mahony J, Moscarelli A, Kelleher P, Lugli GA, Ventura M, Settanni L, van Sinderen D.

Viruses. 2017 Mar 16;9(3). pii: E45. doi: 10.3390/v9030045.


Biocidal Inactivation of Lactococcus lactis Bacteriophages: Efficacy and Targets of Commonly Used Sanitizers.

Hayes S, Murphy J, Mahony J, Lugli GA, Ventura M, Noben JP, Franz CM, Neve H, Nauta A, Van Sinderen D.

Front Microbiol. 2017 Feb 2;8:107. doi: 10.3389/fmicb.2017.00107. eCollection 2017.


Genetic and functional characterisation of the lactococcal P335 phage-host interactions.

Mahony J, Oliveira J, Collins B, Hanemaaijer L, Lugli GA, Neve H, Ventura M, Kouwen TR, Cambillau C, van Sinderen D.

BMC Genomics. 2017 Feb 10;18(1):146. doi: 10.1186/s12864-017-3537-5.

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