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Items: 47

1.

Worldwide Occurrence and Activity of the Reef-Building Coral Symbiont Symbiodinium in the Open Ocean.

Decelle J, Carradec Q, Pochon X, Henry N, Romac S, Mahé F, Dunthorn M, Kourlaiev A, Voolstra CR, Wincker P, de Vargas C.

Curr Biol. 2018 Nov 19;28(22):3625-3633.e3. doi: 10.1016/j.cub.2018.09.024. Epub 2018 Nov 8.

PMID:
30416058
2.

Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia.

Gully D, Czernic P, Cruveiller S, Mahé F, Longin C, Vallenet D, François P, Nidelet S, Rialle S, Giraud E, Arrighi JF, DasGupta M, Cartieaux F.

Sci Rep. 2018 Jul 19;8(1):10934. doi: 10.1038/s41598-018-29301-0.

3.

Consistent patterns of high alpha and low beta diversity in tropical parasitic and free-living protists.

Lentendu G, Mahé F, Bass D, Rueckert S, Stoeck T, Dunthorn M.

Mol Ecol. 2018 Jul;27(13):2846-2857. doi: 10.1111/mec.14731. Epub 2018 Jun 17.

PMID:
29851187
4.

Cathodoluminescence hyperspectral analysis of whispering gallery modes in active semiconductor wedge resonators.

Guillemé P, Stervinou J, Rohel T, Cornet C, Gachet D, Balac S, Mahé F, Dumeige Y, Léger Y.

Opt Lett. 2018 Apr 15;43(8):1766-1769. doi: 10.1364/OL.43.001766.

PMID:
29652359
5.

Clarifying the Relationships between Microsporidia and Cryptomycota.

Bass D, Czech L, Williams BAP, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA.

J Eukaryot Microbiol. 2018 Nov;65(6):773-782. doi: 10.1111/jeu.12519. Epub 2018 Apr 28.

6.

Surface ocean metabarcoding confirms limited diversity in planktonic foraminifera but reveals unknown hyper-abundant lineages.

Morard R, Garet-Delmas MJ, Mahé F, Romac S, Poulain J, Kucera M, de Vargas C.

Sci Rep. 2018 Feb 7;8(1):2539. doi: 10.1038/s41598-018-20833-z.

7.

[Mathematic modeling: a tool for investigation of bacterial interactions in biofilms].

Martin B, Mahé F.

Med Sci (Paris). 2017 Dec;33(12):1035-1038. doi: 10.1051/medsci/20173312006. Epub 2017 Dec 20. French. No abstract available.

8.

Habitat- and soil-related drivers of the root-associated fungal community of Quercus suber in the Northern Moroccan forest.

Maghnia FZ, Abbas Y, Mahé F, Kerdouh B, Tournier E, Ouadji M, Tisseyre P, Prin Y, El Ghachtouli N, Bakkali Yakhlef SE, Duponnois R, Sanguin H.

PLoS One. 2017 Nov 20;12(11):e0187758. doi: 10.1371/journal.pone.0187758. eCollection 2017.

9.

The pVHL172 isoform is not a tumor suppressor and up-regulates a subset of pro-tumorigenic genes including TGFB1 and MMP13.

Hascoet P, Chesnel F, Jouan F, Le Goff C, Couturier A, Darrigrand E, Mahe F, Rioux-Leclercq N, Le Goff X, Arlot-Bonnemains Y.

Oncotarget. 2017 Jun 6;8(44):75989-76002. doi: 10.18632/oncotarget.18376. eCollection 2017 Sep 29.

10.

A bovine botulism outbreak associated with a suspected cross-contamination from a poultry farm.

Souillard R, Le Maréchal C, Ballan V, Mahé F, Chemaly M, Le Bouquin S.

Vet Microbiol. 2017 Sep;208:212-216. doi: 10.1016/j.vetmic.2017.07.022. Epub 2017 Jul 24.

PMID:
28888640
11.

Meiotic Genes in Colpodean Ciliates Support Secretive Sexuality.

Dunthorn M, Zufall RA, Chi J, Paszkiewicz K, Moore K, Mahé F.

Genome Biol Evol. 2017 Jun 1;9(6):1781-1787. doi: 10.1093/gbe/evx125.

12.

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests.

Mahé F, de Vargas C, Bass D, Czech L, Stamatakis A, Lara E, Singer D, Mayor J, Bunge J, Sernaker S, Siemensmeyer T, Trautmann I, Romac S, Berney C, Kozlov A, Mitchell EAD, Seppey CVW, Egge E, Lentendu G, Wirth R, Trueba G, Dunthorn M.

Nat Ecol Evol. 2017 Mar 20;1(4):91. doi: 10.1038/s41559-017-0091.

PMID:
28812652
13.

Yeasts dominate soil fungal communities in three lowland Neotropical rainforests.

Dunthorn M, Kauserud H, Bass D, Mayor J, Mahé F.

Environ Microbiol Rep. 2017 Oct;9(5):668-675. doi: 10.1111/1758-2229.12575. Epub 2017 Sep 19.

PMID:
28799713
14.

UniEuk: Time to Speak a Common Language in Protistology!

Berney C, Ciuprina A, Bender S, Brodie J, Edgcomb V, Kim E, Rajan J, Parfrey LW, Adl S, Audic S, Bass D, Caron DA, Cochrane G, Czech L, Dunthorn M, Geisen S, Glöckner FO, Mahé F, Quast C, Kaye JZ, Simpson AGB, Stamatakis A, Del Campo J, Yilmaz P, de Vargas C.

J Eukaryot Microbiol. 2017 May;64(3):407-411. doi: 10.1111/jeu.12414. Epub 2017 Apr 21. Review.

15.

A new mathematical model of bacterial interactions in two-species oral biofilms.

Martin B, Tamanai-Shacoori Z, Bronsard J, Ginguené F, Meuric V, Mahé F, Bonnaure-Mallet M.

PLoS One. 2017 Mar 2;12(3):e0173153. doi: 10.1371/journal.pone.0173153. eCollection 2017.

16.

Open-Source Sequence Clustering Methods Improve the State Of the Art.

Kopylova E, Navas-Molina JA, Mercier C, Xu ZZ, Mahé F, He Y, Zhou HW, Rognes T, Caporaso JG, Knight R.

mSystems. 2016 Feb 9;1(1). pii: e00003-15. eCollection 2016 Jan-Feb.

17.

VSEARCH: a versatile open source tool for metagenomics.

Rognes T, Flouri T, Nichols B, Quince C, Mahé F.

PeerJ. 2016 Oct 18;4:e2584. eCollection 2016.

18.

Benthic protists: the under-charted majority.

Forster D, Dunthorn M, Mahé F, Dolan JR, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Edvardsen B, Egge E, Eikrem W, Gobet A, Kooistra WH, Logares R, Massana R, Montresor M, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Richards TA, Santini S, Sarno D, Siano R, Vaulot D, Wincker P, Zingone A, de Vargas C, Stoeck T.

FEMS Microbiol Ecol. 2016 Aug;92(8). pii: fiw120. doi: 10.1093/femsec/fiw120. Epub 2016 Jun 5.

PMID:
27267932
19.

Comparison of three clustering approaches for detecting novel environmental microbial diversity.

Forster D, Dunthorn M, Stoeck T, Mahé F.

PeerJ. 2016 Feb 25;4:e1692. doi: 10.7717/peerj.1692. eCollection 2016.

20.

Multiplex Antibody Detection for Noninvasive Genus-Level Diagnosis of Prosthetic Joint Infection.

Marmor S, Bauer T, Desplaces N, Heym B, Roux AL, Sol O, Rogé J, Mahé F, Désiré L, Aegerter P, Ghout I, Ropers J, Gaillard JL, Rottman M.

J Clin Microbiol. 2016 Apr;54(4):1065-73. doi: 10.1128/JCM.02885-15. Epub 2016 Feb 10.

21.

Swarm v2: highly-scalable and high-resolution amplicon clustering.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2015 Dec 10;3:e1420. doi: 10.7717/peerj.1420. eCollection 2015.

22.

Molecular diversity and distribution of marine fungi across 130 European environmental samples.

Richards TA, Leonard G, Mahé F, Del Campo J, Romac S, Jones MD, Maguire F, Dunthorn M, De Vargas C, Massana R, Chambouvet A.

Proc Biol Sci. 2015 Nov 22;282(1819). pii: 20152243. doi: 10.1098/rspb.2015.2243.

23.

Global patterns of pelagic dinoflagellate diversity across protist size classes unveiled by metabarcoding.

Le Bescot N, Mahé F, Audic S, Dimier C, Garet MJ, Poulain J, Wincker P, de Vargas C, Siano R.

Environ Microbiol. 2016 Feb;18(2):609-26. doi: 10.1111/1462-2920.13039. Epub 2015 Oct 26.

PMID:
26337598
24.

Occurrence of C. botulinum in healthy cattle and their environment following poultry botulism outbreaks in mixed farms.

Souillard R, Le Maréchal C, Hollebecque F, Rouxel S, Barbé A, Houard E, Léon D, Poëzévara T, Fach P, Woudstra C, Mahé F, Chemaly M, Le Bouquin S.

Vet Microbiol. 2015 Oct 22;180(1-2):142-5. doi: 10.1016/j.vetmic.2015.07.032. Epub 2015 Jul 29.

PMID:
26298858
25.

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing.

Massana R, Gobet A, Audic S, Bass D, Bittner L, Boutte C, Chambouvet A, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Forn I, Forster D, Guillou L, Jaillon O, Kooistra WH, Logares R, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Probert I, Romac S, Richards T, Santini S, Shalchian-Tabrizi K, Siano R, Simon N, Stoeck T, Vaulot D, Zingone A, de Vargas C.

Environ Microbiol. 2015 Oct;17(10):4035-49. doi: 10.1111/1462-2920.12955. Epub 2015 Aug 4.

PMID:
26119494
26.

Ocean plankton. Eukaryotic plankton diversity in the sunlit ocean.

de Vargas C, Audic S, Henry N, Decelle J, Mahé F, Logares R, Lara E, Berney C, Le Bescot N, Probert I, Carmichael M, Poulain J, Romac S, Colin S, Aury JM, Bittner L, Chaffron S, Dunthorn M, Engelen S, Flegontova O, Guidi L, Horák A, Jaillon O, Lima-Mendez G, Lukeš J, Malviya S, Morard R, Mulot M, Scalco E, Siano R, Vincent F, Zingone A, Dimier C, Picheral M, Searson S, Kandels-Lewis S; Tara Oceans Coordinators, Acinas SG, Bork P, Bowler C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Not F, Ogata H, Pesant S, Raes J, Sieracki ME, Speich S, Stemmann L, Sunagawa S, Weissenbach J, Wincker P, Karsenti E.

Science. 2015 May 22;348(6237):1261605. doi: 10.1126/science.1261605.

27.

PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.

Morard R, Darling KF, Mahé F, Audic S, Ujiié Y, Weiner AK, André A, Seears HA, Wade CM, Quillévéré F, Douady CJ, Escarguel G, de Garidel-Thoron T, Siccha M, Kucera M, de Vargas C.

Mol Ecol Resour. 2015 Nov;15(6):1472-85. doi: 10.1111/1755-0998.12410. Epub 2015 Apr 15.

PMID:
25828689
28.

Deep sequencing uncovers protistan plankton diversity in the Portuguese Ria Formosa solar saltern ponds.

Filker S, Gimmler A, Dunthorn M, Mahé F, Stoeck T.

Extremophiles. 2015 Mar;19(2):283-95. doi: 10.1007/s00792-014-0713-2. Epub 2014 Dec 4.

PMID:
25472012
29.

Comparing High-throughput Platforms for Sequencing the V4 Region of SSU-rDNA in Environmental Microbial Eukaryotic Diversity Surveys.

Mahé F, Mayor J, Bunge J, Chi J, Siemensmeyer T, Stoeck T, Wahl B, Paprotka T, Filker S, Dunthorn M.

J Eukaryot Microbiol. 2015 May-Jun;62(3):338-45. doi: 10.1111/jeu.12187. Epub 2014 Nov 20.

PMID:
25312509
30.

Swarm: robust and fast clustering method for amplicon-based studies.

Mahé F, Rognes T, Quince C, de Vargas C, Dunthorn M.

PeerJ. 2014 Sep 25;2:e593. doi: 10.7717/peerj.593. eCollection 2014.

31.

Intracellular diversity of the V4 and V9 regions of the 18S rRNA in marine protists (radiolarians) assessed by high-throughput sequencing.

Decelle J, Romac S, Sasaki E, Not F, Mahé F.

PLoS One. 2014 Aug 4;9(8):e104297. doi: 10.1371/journal.pone.0104297. eCollection 2014.

32.

Ciliates and the rare biosphere: a review.

Dunthorn M, Stoeck T, Clamp J, Warren A, Mahé F.

J Eukaryot Microbiol. 2014 Jul-Aug;61(4):404-9. doi: 10.1111/jeu.12121. Epub 2014 Jun 2. Review.

PMID:
24801645
33.

Patterns of rare and abundant marine microbial eukaryotes.

Logares R, Audic S, Bass D, Bittner L, Boutte C, Christen R, Claverie JM, Decelle J, Dolan JR, Dunthorn M, Edvardsen B, Gobet A, Kooistra WH, Mahé F, Not F, Ogata H, Pawlowski J, Pernice MC, Romac S, Shalchian-Tabrizi K, Simon N, Stoeck T, Santini S, Siano R, Wincker P, Zingone A, Richards TA, de Vargas C, Massana R.

Curr Biol. 2014 Apr 14;24(8):813-21. doi: 10.1016/j.cub.2014.02.050. Epub 2014 Apr 3.

34.

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context.

Dunthorn M, Otto J, Berger SA, Stamatakis A, Mahé F, Romac S, de Vargas C, Audic S; Biomarks Consortium, Stock A, Kauff F, Stoeck T.

Mol Biol Evol. 2014 Apr;31(4):993-1009. doi: 10.1093/molbev/msu055. Epub 2014 Jan 27.

PMID:
24473288
35.

Meiosis gene inventory of four ciliates reveals the prevalence of a synaptonemal complex-independent crossover pathway.

Chi J, Mahé F, Loidl J, Logsdon J, Dunthorn M.

Mol Biol Evol. 2014 Mar;31(3):660-72. doi: 10.1093/molbev/mst258. Epub 2013 Dec 13.

PMID:
24336924
36.

Vampires in the oceans: predatory cercozoan amoebae in marine habitats.

Berney C, Romac S, Mahé F, Santini S, Siano R, Bass D.

ISME J. 2013 Dec;7(12):2387-99. doi: 10.1038/ismej.2013.116. Epub 2013 Jul 18.

37.

Diversity, ecology and biogeochemistry of cyst-forming acantharia (radiolaria) in the oceans.

Decelle J, Martin P, Paborstava K, Pond DW, Tarling G, Mahé F, de Vargas C, Lampitt R, Not F.

PLoS One. 2013;8(1):e53598. doi: 10.1371/journal.pone.0053598. Epub 2013 Jan 11.

38.

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote small sub-unit rRNA sequences with curated taxonomy.

Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J, Del Campo J, Dolan JR, Dunthorn M, Edvardsen B, Holzmann M, Kooistra WH, Lara E, Le Bescot N, Logares R, Mahé F, Massana R, Montresor M, Morard R, Not F, Pawlowski J, Probert I, Sauvadet AL, Siano R, Stoeck T, Vaulot D, Zimmermann P, Christen R.

Nucleic Acids Res. 2013 Jan;41(Database issue):D597-604. doi: 10.1093/nar/gks1160. Epub 2012 Nov 27.

39.

Molecular phylogeny and morphological evolution of the Acantharia (Radiolaria).

Decelle J, Suzuki N, Mahé F, de Vargas C, Not F.

Protist. 2012 May;163(3):435-50. doi: 10.1016/j.protis.2011.10.002. Epub 2011 Dec 8.

PMID:
22154393
40.

Isolation, phylogeny and evolution of the SymRK gene in the legume genus Lupinus L.

Mahé F, Markova D, Pasquet R, Misset MT, Aïnouche A.

Mol Phylogenet Evol. 2011 Jul;60(1):49-61. doi: 10.1016/j.ympev.2011.04.017. Epub 2011 Apr 30.

PMID:
21550410
41.

Assignment of 3 genetic linkage groups to 3 chromosomes of narrow-leafed lupin.

Lesniewska K, Ksiazkiewicz M, Nelson MN, Mahé F, Aïnouche A, Wolko B, Naganowska B.

J Hered. 2011 Mar-Apr;102(2):228-36. doi: 10.1093/jhered/esq107. Epub 2010 Oct 14.

PMID:
20947695
42.

Transcriptome divergence between the hexaploid salt-marsh sister species Spartina maritima and Spartina alterniflora (Poaceae).

Chelaifa H, Mahé F, Ainouche M.

Mol Ecol. 2010 May;19(10):2050-63. doi: 10.1111/j.1365-294X.2010.04637.x.

PMID:
20550634
43.

Browsing repeats in genomes: Pygram and an application to non-coding region analysis.

Durand P, Mahé F, Valin AS, Nicolas J.

BMC Bioinformatics. 2006 Oct 26;7:477.

44.

A new crystalline phase of nitric acid dihydrate.

Lebrun N, Mahe F, Lamiot J, Foulon M, Petit JC.

Acta Crystallogr C. 2001 Oct;57(Pt 10):1129-31. Epub 2001 Oct 12.

PMID:
11600760
45.

Kinetic behaviour investigations and crystal structure of nitric acid dihydrate.

Lebrun N, Mahe F, Lamiot J, Foulon M, Petit JC, Prevost D.

Acta Crystallogr B. 2001 Feb;57(Pt 1):27-35.

PMID:
11173364
46.

[Typhoid cholecystitis still exists].

El Haddad R, Hajman C, Mahé F.

J Chir (Paris). 1984 Jan;121(1):61. French. No abstract available.

PMID:
6715434
47.

[EARLY REOPERATIONS IN ABDOMINAL SURGERY. PRELIMINARY STUDIES].

OLIVIER C, MAHE F, SIBERT, RETTORI R, EPFELBAUM R, GODART E.

Mem Acad Chir (Paris). 1964 Feb 26;90:302-9. French. No abstract available.

PMID:
14142062

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