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Items: 29

1.

Whole Genome Characterization of a Few EMS-Induced Mutants of Upland Rice Variety Nagina 22 Reveals a Staggeringly High Frequency of SNPs Which Show High Phenotypic Plasticity Towards the Wild-Type.

Sevanthi AMV, Kandwal P, Kale PB, Prakash C, Ramkumar MK, Yadav N, Mahato AK, Sureshkumar V, Behera M, Deshmukh RK, Jeyaparakash P, Kar MK, Manonmani S, Muthurajan R, Gopala KS, Neelamraju S, Sheshshayee MS, Swain P, Singh AK, Singh NK, Mohapatra T, Sharma RP.

Front Plant Sci. 2018 Sep 4;9:1179. doi: 10.3389/fpls.2018.01179. eCollection 2018.

2.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
3.

Genetic diversity of sweet corn inbreds using agro-morphological traits and microsatellite markers.

Mahato A, Shahi JP, Singh PK, Kumar M.

3 Biotech. 2018 Aug;8(8):332. doi: 10.1007/s13205-018-1353-5. Epub 2018 Jul 21.

PMID:
30073117
4.

Hematoma in Urinary Bladder Masquerading as Neoplastic Mass.

Jain A, Mahato A, Jacob MJ, Vishnoi MG, Pandit AG, Solanki KP, Kishore B, John AR, Neeraj.

Indian J Nucl Med. 2018 Jul-Sep;33(3):253-254. doi: 10.4103/ijnm.IJNM_27_18.

5.

Investigating aquifer contamination and groundwater quality in eastern Terai region of Nepal.

Mahato S, Mahato A, Karna PK, Balmiki N.

BMC Res Notes. 2018 May 21;11(1):321. doi: 10.1186/s13104-018-3445-z.

6.

An improved draft of the pigeonpea (Cajanus cajan (L.) Millsp.) genome.

Mahato AK, Sharma AK, Sharma TR, Singh NK.

Data Brief. 2017 Nov 22;16:376-380. doi: 10.1016/j.dib.2017.11.066. eCollection 2018 Feb.

7.

Transcriptome Landscape at Different Developmental Stages of a Drought Tolerant Cultivar of Flax (Linum usitatissimum).

Dash PK, Rai R, Mahato AK, Gaikwad K, Singh NK.

Front Chem. 2017 Nov 9;5:82. doi: 10.3389/fchem.2017.00082. eCollection 2017. No abstract available.

8.

Non-Hodgkin's Lymphoma with Pelvic Skeletal Muscle Involvement Presenting as Low Back Ache: An Uncommon Presentation of a Rather Common Malignancy.

John AR, Gahlot GPS, Singh BK, Jain A, Mahato A, Jacob MJ.

Indian J Nucl Med. 2017 Oct-Dec;32(4):355-358. doi: 10.4103/ijnm.IJNM_54_17.

9.

MiSNPDb: a web-based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation.

Iquebal MA, Jaiswal S, Mahato AK, Jayaswal PK, Angadi UB, Kumar N, Sharma N, Singh AK, Srivastav M, Prakash J, Singh SK, Khan K, Mishra RK, Rajan S, Bajpai A, Sandhya BS, Nischita P, Ravishankar KV, Dinesh MR, Rai A, Kumar D, Sharma TR, Singh NK.

Sci Rep. 2017 Nov 2;7(1):14968. doi: 10.1038/s41598-017-14998-2.

10.

Directional Solvent Vapor Annealing for Crystal Alignment in Solution-Processed Organic Semiconductors.

Bharti D, Raghuwanshi V, Varun I, Mahato AK, Tiwari SP.

ACS Appl Mater Interfaces. 2017 Aug 9;9(31):26226-26233. doi: 10.1021/acsami.7b03432. Epub 2017 Jul 27.

PMID:
28707466
11.

A high-density intraspecific SNP linkage map of pigeonpea (Cajanas cajan L. Millsp.).

Arora S, Mahato AK, Singh S, Mandal P, Bhutani S, Dutta S, Kumawat G, Singh BP, Chaudhary AK, Yadav R, Gaikwad K, Sevanthi AM, Datta S, Raje RS, Sharma TR, Singh NK.

PLoS One. 2017 Jun 27;12(6):e0179747. doi: 10.1371/journal.pone.0179747. eCollection 2017.

12.

The draft genome of Corchorus olitorius cv. JRO-524 (Navin).

Sarkar D, Mahato AK, Satya P, Kundu A, Singh S, Jayaswal PK, Singh A, Bahadur K, Pattnaik S, Singh N, Chakraborty A, Mandal NA, Das D, Basu T, Sevanthi AM, Saha D, Datta S, Kar CS, Mitra J, Datta K, Karmakar PG, Sharma TR, Mohapatra T, Singh NK.

Genom Data. 2017 May 7;12:151-154. doi: 10.1016/j.gdata.2017.05.007. eCollection 2017 Jun.

13.

Zebrafish GDNF and its co-receptor GFRα1 activate the human RET receptor and promote the survival of dopaminergic neurons in vitro.

Saarenpää T, Kogan K, Sidorova Y, Mahato AK, Tascón I, Kaljunen H, Yu L, Kallijärvi J, Jurvansuu J, Saarma M, Goldman A.

PLoS One. 2017 May 3;12(5):e0176166. doi: 10.1371/journal.pone.0176166. eCollection 2017.

14.

Leaf Transcriptome Sequencing for Identifying Genic-SSR Markers and SNP Heterozygosity in Crossbred Mango Variety 'Amrapali' (Mangifera indica L.).

Mahato AK, Sharma N, Singh A, Srivastav M, Jaiprakash, Singh SK, Singh AK, Sharma TR, Singh NK.

PLoS One. 2016 Oct 13;11(10):e0164325. doi: 10.1371/journal.pone.0164325. eCollection 2016.

15.
16.

Geometric flow control of shear bands by suppression of viscous sliding.

Sagapuram D, Viswanathan K, Mahato A, Sundaram NK, M'Saoubi R, Trumble KP, Chandrasekar S.

Proc Math Phys Eng Sci. 2016 Aug;472(2192):20160167.

17.

Influence of single and binary doping of strontium and lithium on in vivo biological properties of bioactive glass scaffolds.

Khan PK, Mahato A, Kundu B, Nandi SK, Mukherjee P, Datta S, Sarkar S, Mukherjee J, Nath S, Balla VK, Mandal C.

Sci Rep. 2016 Sep 8;6:32964. doi: 10.1038/srep32964.

18.

Analysis of Magnaporthe oryzae Genome Reveals a Fungal Effector, Which Is Able to Induce Resistance Response in Transgenic Rice Line Containing Resistance Gene, Pi54.

Ray S, Singh PK, Gupta DK, Mahato AK, Sarkar C, Rathour R, Singh NK, Sharma TR.

Front Plant Sci. 2016 Aug 8;7:1140. doi: 10.3389/fpls.2016.01140. eCollection 2016.

19.

De novo transcriptome sequencing facilitates genomic resource generation in Tinospora cordifolia.

Singh R, Kumar R, Mahato AK, Paliwal R, Singh AK, Kumar S, Marla SS, Kumar A, Singh NK.

Funct Integr Genomics. 2016 Sep;16(5):581-91. doi: 10.1007/s10142-016-0508-x. Epub 2016 Jul 27.

PMID:
27465295
20.

Transcriptome profiling of the salt-stress response in Triticum aestivum cv. Kharchia Local.

Goyal E, Amit SK, Singh RS, Mahato AK, Chand S, Kanika K.

Sci Rep. 2016 Jun 13;6:27752. doi: 10.1038/srep27752.

21.

Converted marine coral hydroxyapatite implants with growth factors: in vivo bone regeneration.

Nandi SK, Kundu B, Mukherjee J, Mahato A, Datta S, Balla VK.

Mater Sci Eng C Mater Biol Appl. 2015 Apr;49:816-823. doi: 10.1016/j.msec.2015.01.078. Epub 2015 Jan 26.

PMID:
25687013
22.

Nucleation and propagation of solitary Schallamach waves.

Viswanathan K, Mahato A, Chandrasekar S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jan;91(1):012408. Epub 2015 Jan 20.

PMID:
25679629
23.

In vitro and in vivo evaluation of the marine sponge skeleton as a bone mimicking biomaterial.

Nandi SK, Kundu B, Mahato A, Thakur NL, Joardar SN, Mandal BB.

Integr Biol (Camb). 2015 Feb;7(2):250-62. doi: 10.1039/c4ib00289j.

PMID:
25578396
24.

Surface folding in metals: a mechanism for delamination wear in sliding.

Mahato A, Guo Y, Sundaram NK, Chandrasekar S.

Proc Math Phys Eng Sci. 2014 Sep 8;470(2169):20140297.

25.

Development and effect of different bioactive silicate glass scaffolds: in vitro evaluation for use as a bone drug delivery system.

Soundrapandian C, Mahato A, Kundu B, Datta S, Sa B, Basu D.

J Mech Behav Biomed Mater. 2014 Dec;40:1-12. doi: 10.1016/j.jmbbm.2014.08.007. Epub 2014 Aug 17.

PMID:
25190432
26.

Studies on synthesis and characteristics of zeolite prepared from Indian fly ash.

Prasad B, Maity S, Sangita K, Mahato AK, Mortimer RJ.

Environ Technol. 2012 Jan-Feb;33(1-3):37-50.

PMID:
22519086
27.

The first draft of the pigeonpea genome sequence.

Singh NK, Gupta DK, Jayaswal PK, Mahato AK, Dutta S, Singh S, Bhutani S, Dogra V, Singh BP, Kumawat G, Pal JK, Pandit A, Singh A, Rawal H, Kumar A, Rama Prashat G, Khare A, Yadav R, Raje RS, Singh MN, Datta S, Fakrudin B, Wanjari KB, Kansal R, Dash PK, Jain PK, Bhattacharya R, Gaikwad K, Mohapatra T, Srinivasan R, Sharma TR.

J Plant Biochem Biotechnol. 2012;21:98-112. Epub 2011 Oct 25.

28.

Neurocognitive psychotherapy for adult attention deficit hyperactive disorder.

Halder S, Mahato AK.

Ind Psychiatry J. 2009 Jul;18(2):113-6. doi: 10.4103/0972-6748.62271.

29.

Antimicrobial potentiality of Phyllanthus amarus against drug resistant pathogens.

Mazumder A, Mahato A, Mazumder R.

Nat Prod Res. 2006 Apr;20(4):323-6.

PMID:
16644526

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