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Items: 20

1.

Escherichia coli mutation rates and spectra with combinations of environmental limitations.

Maharjan RP, Ferenci T.

Microbiology. 2018 Dec;164(12):1491-1502. doi: 10.1099/mic.0.000727. Epub 2018 Oct 5.

PMID:
30300121
2.

The impact of growth rate and environmental factors on mutation rates and spectra in Escherichia coli.

Maharjan RP, Ferenci T.

Environ Microbiol Rep. 2018 Dec;10(6):626-633. doi: 10.1111/1758-2229.12661. Epub 2018 Sep 26.

PMID:
29797781
3.

A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input-mutation output relationships.

Maharjan RP, Ferenci T.

PLoS Biol. 2017 Jun 8;15(6):e2001477. doi: 10.1371/journal.pbio.2001477. eCollection 2017 Jun.

4.

Natural Escherichia coli isolates rapidly acquire genetic changes upon laboratory domestication.

Liu B, Eydallin G, Maharjan RP, Feng L, Wang L, Ferenci T.

Microbiology. 2017 Jan;163(1):22-30. doi: 10.1099/mic.0.000405.

PMID:
28198347
5.

Simple phenotypic sweeps hide complex genetic changes in populations.

Maharjan RP, Liu B, Feng L, Ferenci T, Wang L.

Genome Biol Evol. 2015 Jan 13;7(2):531-44. doi: 10.1093/gbe/evv004.

6.

A metabolic trade-off between phosphate and glucose utilization in Escherichia coli.

Behrends V, Maharjan RP, Ryall B, Feng L, Liu B, Wang L, Bundy JG, Ferenci T.

Mol Biosyst. 2014 Nov;10(11):2820-2. doi: 10.1039/c4mb00313f.

PMID:
25141987
7.

Global population structure and evolution of Bordetella pertussis and their relationship with vaccination.

Bart MJ, Harris SR, Advani A, Arakawa Y, Bottero D, Bouchez V, Cassiday PK, Chiang CS, Dalby T, Fry NK, Gaillard ME, van Gent M, Guiso N, Hallander HO, Harvill ET, He Q, van der Heide HG, Heuvelman K, Hozbor DF, Kamachi K, Karataev GI, Lan R, Lutyńska A, Maharjan RP, Mertsola J, Miyamura T, Octavia S, Preston A, Quail MA, Sintchenko V, Stefanelli P, Tondella ML, Tsang RS, Xu Y, Yao SM, Zhang S, Parkhill J, Mooi FR.

MBio. 2014 Apr 22;5(2):e01074. doi: 10.1128/mBio.01074-14.

8.

Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations.

Maharjan RP, Ferenci T.

Evolution. 2013 Sep;67(9):2762-8. doi: 10.1111/evo.12137. Epub 2013 May 22.

PMID:
24033182
9.

A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli.

Maharjan RP, Gaffé J, Plucain J, Schliep M, Wang L, Feng L, Tenaillon O, Ferenci T, Schneider D.

BMC Genomics. 2013 Jul 3;14:441. doi: 10.1186/1471-2164-14-441.

10.

Mutation accumulation and fitness in mutator subpopulations of Escherichia coli.

Maharjan RP, Liu B, Li Y, Reeves PR, Wang L, Ferenci T.

Biol Lett. 2012 Dec 5;9(1):20120961. doi: 10.1098/rsbl.2012.0961. Print 2013 Feb 23.

11.

The multiplicity of divergence mechanisms in a single evolving population.

Maharjan RP, Ferenci T, Reeves PR, Li Y, Liu B, Wang L.

Genome Biol. 2012 Jun 8;13(6):R41. doi: 10.1186/gb-2012-13-6-r41.

12.

The uncertain consequences of transferring bacterial strains between laboratories - rpoS instability as an example.

Spira B, de Almeida Toledo R, Maharjan RP, Ferenci T.

BMC Microbiol. 2011 Nov 8;11:248. doi: 10.1186/1471-2180-11-248.

13.

Insertion sequence-driven evolution of Escherichia coli in chemostats.

Gaffé J, McKenzie C, Maharjan RP, Coursange E, Ferenci T, Schneider D.

J Mol Evol. 2011 Apr;72(4):398-412. doi: 10.1007/s00239-011-9439-2. Epub 2011 Mar 12.

PMID:
21399911
14.

Insight into evolution of Bordetella pertussis from comparative genomic analysis: evidence of vaccine-driven selection.

Octavia S, Maharjan RP, Sintchenko V, Stevenson G, Reeves PR, Gilbert GL, Lan R.

Mol Biol Evol. 2011 Jan;28(1):707-15. doi: 10.1093/molbev/msq245. Epub 2010 Sep 10.

PMID:
20833694
15.

Divergence involving global regulatory gene mutations in an Escherichia coli population evolving under phosphate limitation.

Wang L, Spira B, Zhou Z, Feng L, Maharjan RP, Li X, Li F, McKenzie C, Reeves PR, Ferenci T.

Genome Biol Evol. 2010 Jul 16;2:478-87. doi: 10.1093/gbe/evq035.

16.

Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis.

Kurniawan J, Maharjan RP, Chan WF, Reeves PR, Sintchenko V, Gilbert GL, Mooi FR, Lan R.

Emerg Infect Dis. 2010 Feb;16(2):297-300. doi: 10.3201/eid1602.081707.

17.

Rapid and accurate typing of Bordetella pertussis targeting genes encoding acellular vaccine antigens using real time PCR and High Resolution Melt analysis.

Chan WF, Maharjan RP, Reeves PR, Sintchenko V, Gilbert GL, Lan R.

J Microbiol Methods. 2009 Jun;77(3):326-9. doi: 10.1016/j.mimet.2009.03.007. Epub 2009 Mar 31.

PMID:
19341769
18.

Genome-wide analysis of single nucleotide polymorphisms in Bordetella pertussis using comparative genomic sequencing.

Maharjan RP, Gu C, Reeves PR, Sintchenko V, Gilbert GL, Lan R.

Res Microbiol. 2008 Nov-Dec;159(9-10):602-8. doi: 10.1016/j.resmic.2008.08.004. Epub 2008 Aug 26.

PMID:
18790049
19.

Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population.

Maharjan RP, Seeto S, Ferenci T.

J Bacteriol. 2007 Mar;189(6):2350-8. Epub 2006 Dec 8.

20.

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