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Items: 1 to 50 of 60

1.

Corrigendum to "Coordinated Transcriptional Regulation of Hspa1a Gene by Multiple Transcription Factors: Crucial Roles for HSF-1, NF-Y, NF-κB, and CREB" [J. Mol. Biol. (2014) 426, 116-135].

Sasi BK, Sonawane PJ, Gupta V, Sahu BS, Mahapatra NR.

J Mol Biol. 2019 May 3;431(10):2060. doi: 10.1016/j.jmb.2019.03.026. Epub 2019 Apr 11. No abstract available.

PMID:
30981428
2.

Regulation of Monoamine Oxidase B Gene Expression: Key Roles for Transcription Factors Sp1, Egr1 and CREB, and microRNAs miR-300 and miR-1224.

Arige V, Agarwal A, Khan AA, Kalyani A, Natarajan B, Gupta V, Reddy SS, Barthwal MK, Mahapatra NR.

J Mol Biol. 2019 Mar 15;431(6):1127-1147. doi: 10.1016/j.jmb.2019.01.042. Epub 2019 Feb 7.

PMID:
30738894
3.

Boosted neural networks scoring functions for accurate ligand docking and ranking.

Ashtawy HM, Mahapatra NR.

J Bioinform Comput Biol. 2018 Apr;16(2):1850004. doi: 10.1142/S021972001850004X. Epub 2018 Feb 4.

PMID:
29495922
4.

Task-Specific Scoring Functions for Predicting Ligand Binding Poses and Affinity and for Screening Enrichment.

Ashtawy HM, Mahapatra NR.

J Chem Inf Model. 2018 Jan 22;58(1):119-133. doi: 10.1021/acs.jcim.7b00309. Epub 2017 Dec 20.

PMID:
29190087
5.

Descriptor Data Bank (DDB): A Cloud Platform for Multiperspective Modeling of Protein-Ligand Interactions.

Ashtawy HM, Mahapatra NR.

J Chem Inf Model. 2018 Jan 22;58(1):134-147. doi: 10.1021/acs.jcim.7b00310. Epub 2017 Dec 18.

PMID:
29186950
6.

A haplotype variant of the human chromogranin A gene (CHGA) promoter increases CHGA expression and the risk for cardiometabolic disorders.

Subramanian L, Khan AA, Allu PKR, Kiranmayi M, Sahu BS, Sharma S, Khullar M, Mullasari AS, Mahapatra NR.

J Biol Chem. 2017 Aug 25;292(34):13970-13985. doi: 10.1074/jbc.M117.778134. Epub 2017 Jun 30.

7.

Catestatin: A Master Regulator of Cardiovascular Functions.

Mahata SK, Kiranmayi M, Mahapatra NR.

Curr Med Chem. 2018;25(11):1352-1374. doi: 10.2174/0929867324666170425100416. Review.

PMID:
28443506
8.

Chromogranin A regulates vesicle storage and mitochondrial dynamics to influence insulin secretion.

Wollam J, Mahata S, Riopel M, Hernandez-Carretero A, Biswas A, Bandyopadhyay GK, Chi NW, Eiden LE, Mahapatra NR, Corti A, Webster NJG, Mahata SK.

Cell Tissue Res. 2017 Jun;368(3):487-501. doi: 10.1007/s00441-017-2580-5. Epub 2017 Feb 20.

PMID:
28220294
9.

Functional promoter polymorphisms direct the expression of cystathionine gamma-lyase gene in mouse models of essential hypertension.

Gupta V, Kapopara PR, Khan AA, Arige V, Subramanian L, Sonawane PJ, Sasi BK, Mahapatra NR.

J Mol Cell Cardiol. 2017 Jan;102:61-73. doi: 10.1016/j.yjmcc.2016.11.005. Epub 2016 Nov 16.

PMID:
27865915
10.

Catestatin Gly364Ser Variant Alters Systemic Blood Pressure and the Risk for Hypertension in Human Populations via Endothelial Nitric Oxide Pathway.

Kiranmayi M, Chirasani VR, Allu PK, Subramanian L, Martelli EE, Sahu BS, Vishnuprabu D, Kumaragurubaran R, Sharma S, Bodhini D, Dixit M, Munirajan AK, Khullar M, Radha V, Mohan V, Mullasari AS, Naga Prasad SV, Senapati S, Mahapatra NR.

Hypertension. 2016 Aug;68(2):334-47. doi: 10.1161/HYPERTENSIONAHA.116.06568. Epub 2016 Jun 20.

11.

A Comparative Assessment of Predictive Accuracies of Conventional and Machine Learning Scoring Functions for Protein-Ligand Binding Affinity Prediction.

Ashtawy HM, Mahapatra NR.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Mar-Apr;12(2):335-47. doi: 10.1109/TCBB.2014.2351824.

PMID:
26357221
12.

Genotyping and meta-analysis of KIF6 Trp719Arg polymorphism in South Indian Coronary Artery Disease patients: A case-control study.

Vishnuprabu D, Geetha S, Bhaskar LV, Mahapatra NR, Munirajan AK.

Meta Gene. 2015 Jul 15;5:129-34. doi: 10.1016/j.mgene.2015.07.001. eCollection 2015 Sep.

13.

A common genetic variant of the chromogranin A-derived peptide catestatin is associated with atherogenesis and hypertension in a Japanese population.

Choi Y, Miura M, Nakata Y, Sugasawa T, Nissato S, Otsuki T, Sugawara J, Iemitsu M, Kawakami Y, Shimano H, Iijima Y, Tanaka K, Kuno S, Allu PK, Mahapatra NR, Maeda S, Takekoshi K.

Endocr J. 2015;62(9):797-804. doi: 10.1507/endocrj.EJ14-0471. Epub 2015 Jul 25.

14.

Post-Transcriptional Regulation of Renalase Gene by miR-29 and miR-146 MicroRNAs: Implications for Cardiometabolic Disorders.

Kalyani A, Sonawane PJ, Khan AA, Subramanian L, Ehret GB, Mullasari AS, Mahapatra NR.

J Mol Biol. 2015 Aug 14;427(16):2629-46. doi: 10.1016/j.jmb.2015.07.003. Epub 2015 Jul 9.

PMID:
26165231
15.

Machine-learning scoring functions for identifying native poses of ligands docked to known and novel proteins.

Ashtawy HM, Mahapatra NR.

BMC Bioinformatics. 2015;16 Suppl 6:S3. doi: 10.1186/1471-2105-16-S6-S3. Epub 2015 Apr 17.

16.

Association of MMP7 -181A→G Promoter Polymorphism with Gastric Cancer Risk: INFLUENCE OF NICOTINE IN DIFFERENTIAL ALLELE-SPECIFIC TRANSCRIPTION VIA INCREASED PHOSPHORYLATION OF cAMP-RESPONSE ELEMENT-BINDING PROTEIN (CREB).

Kesh K, Subramanian L, Ghosh N, Gupta V, Gupta A, Bhattacharya S, Mahapatra NR, Swarnakar S.

J Biol Chem. 2015 Jun 5;290(23):14391-406. doi: 10.1074/jbc.M114.630129. Epub 2015 Apr 6.

17.

Molecular mechanism of monoamine oxidase A gene regulation under inflammation and ischemia-like conditions: key roles of the transcription factors GATA2, Sp1 and TBP.

Gupta V, Khan AA, Sasi BK, Mahapatra NR.

J Neurochem. 2015 Jul;134(1):21-38. doi: 10.1111/jnc.13099. Epub 2015 Apr 16.

18.

BgN-Score and BsN-Score: bagging and boosting based ensemble neural networks scoring functions for accurate binding affinity prediction of protein-ligand complexes.

Ashtawy HM, Mahapatra NR.

BMC Bioinformatics. 2015;16 Suppl 4:S8. doi: 10.1186/1471-2105-16-S4-S8. Epub 2015 Feb 23.

19.

Transcriptional regulation of the novel monoamine oxidase renalase: Crucial roles of transcription factors Sp1, STAT3, and ZBP89.

Sonawane PJ, Gupta V, Sasi BK, Kalyani A, Natarajan B, Khan AA, Sahu BS, Mahapatra NR.

Biochemistry. 2014 Nov 11;53(44):6878-92. doi: 10.1021/bi500798n. Epub 2014 Oct 24.

PMID:
25295465
20.

Naturally occurring variants of the dysglycemic peptide pancreastatin: differential potencies for multiple cellular functions and structure-function correlation.

Allu PK, Chirasani VR, Ghosh D, Mani A, Bera AK, Maji SK, Senapati S, Mullasari AS, Mahapatra NR.

J Biol Chem. 2014 Feb 14;289(7):4455-69. doi: 10.1074/jbc.M113.520916. Epub 2013 Dec 12.

21.

Coordinated transcriptional regulation of Hspa1a gene by multiple transcription factors: crucial roles for HSF-1, NF-Y, NF-κB, and CREB.

Sasi BK, Sonawane PJ, Gupta V, Sahu BS, Mahapatra NR.

J Mol Biol. 2014 Jan 9;426(1):116-35. doi: 10.1016/j.jmb.2013.09.008. Epub 2013 Sep 14. Erratum in: J Mol Biol. 2019 May 3;431(10):2060.

PMID:
24041570
22.

MicroRNA-22 and promoter motif polymorphisms at the Chga locus in genetic hypertension: functional and therapeutic implications for gene expression and the pathogenesis of hypertension.

Friese RS, Altshuler AE, Zhang K, Miramontes-Gonzalez JP, Hightower CM, Jirout ML, Salem RM, Gayen JR, Mahapatra NR, Biswas N, Cale M, Vaingankar SM, Kim HS, Courel M, Taupenot L, Ziegler MG, Schork NJ, Pravenec M, Mahata SK, Schmid-Schönbein GW, O'Connor DT.

Hum Mol Genet. 2013 Sep 15;22(18):3624-40. doi: 10.1093/hmg/ddt213. Epub 2013 May 13.

23.

Functional genetic variants of the catecholamine-release-inhibitory peptide catestatin in an Indian population: allele-specific effects on metabolic traits.

Sahu BS, Obbineni JM, Sahu G, Allu PK, Subramanian L, Sonawane PJ, Singh PK, Sasi BK, Senapati S, Maji SK, Bera AK, Gomathi BS, Mullasari AS, Mahapatra NR.

J Biol Chem. 2012 Dec 21;287(52):43840-52. doi: 10.1074/jbc.M112.407916. Epub 2012 Oct 26.

24.

Integrated computational and experimental analysis of the neuroendocrine transcriptome in genetic hypertension identifies novel control points for the cardiometabolic syndrome.

Friese RS, Ye C, Nievergelt CM, Schork AJ, Mahapatra NR, Rao F, Napolitan PS, Waalen J, Ehret GB, Munroe PB, Schmid-Schönbein GW, Eskin E, O'Connor DT.

Circ Cardiovasc Genet. 2012 Aug 1;5(4):430-40. doi: 10.1161/CIRCGENETICS.111.962415. Epub 2012 Jun 5.

25.
26.

Molecular interactions of the physiological anti-hypertensive peptide catestatin with the neuronal nicotinic acetylcholine receptor.

Sahu BS, Mohan J, Sahu G, Singh PK, Sonawane PJ, Sasi BK, Allu PK, Maji SK, Bera AK, Senapati S, Mahapatra NR.

J Cell Sci. 2012 May 1;125(Pt 9):2323-37. doi: 10.1242/jcs.103176. Epub 2012 Feb 22. Erratum in: J Cell Sci. 2012 Jun 1;125(Pt 11):2787. Obbineni, Jagan M [corrected to Mohan, Jagan].

27.

Catecholamine biosynthesis and secretion: physiological and pharmacological effects of secretin.

Mahata M, Zhang K, Gayen JR, Nandi S, Brar BK, Ghosh S, Mahapatra NR, Taupenot L, O'Connor DT, Mahata SK.

Cell Tissue Res. 2011 Jul;345(1):87-102. doi: 10.1007/s00441-011-1177-7. Epub 2011 May 20.

PMID:
21597914
28.

Functional promoter polymorphisms govern differential expression of HMG-CoA reductase gene in mouse models of essential hypertension.

Sonawane PJ, Sahu BS, Sasi BK, Geedi P, Lenka G, Mahapatra NR.

PLoS One. 2011 Jan 31;6(1):e16661. doi: 10.1371/journal.pone.0016661.

29.

Enhancement in the efficiency of polymerase chain reaction by TiO2 nanoparticles: crucial role of enhanced thermal conductivity.

Abdul Khaliq R, Sonawane PJ, Sasi BK, Sahu BS, Pradeep T, Das SK, Mahapatra NR.

Nanotechnology. 2010 Jun 25;21(25):255704. doi: 10.1088/0957-4484/21/25/255704. Epub 2010 Jun 2.

PMID:
20516586
30.

Genetic regulation of catecholamine synthesis, storage and secretion in the spontaneously hypertensive rat.

Jirout ML, Friese RS, Mahapatra NR, Mahata M, Taupenot L, Mahata SK, Kren V, Zídek V, Fischer J, Maatz H, Ziegler MG, Pravenec M, Hubner N, Aitman TJ, Schork NJ, O'Connor DT.

Hum Mol Genet. 2010 Jul 1;19(13):2567-80. doi: 10.1093/hmg/ddq135. Epub 2010 Apr 8.

31.

Global metabolic consequences of the chromogranin A-null model of hypertension: transcriptomic detection, pathway identification, and experimental verification.

Friese RS, Gayen JR, Mahapatra NR, Schmid-Schönbein GW, O'Connor DT, Mahata SK.

Physiol Genomics. 2010 Feb 4;40(3):195-207. doi: 10.1152/physiolgenomics.00164.2009. Epub 2009 Dec 1.

32.

Chromogranin A: a novel susceptibility gene for essential hypertension.

Sahu BS, Sonawane PJ, Mahapatra NR.

Cell Mol Life Sci. 2010 Mar;67(6):861-74. doi: 10.1007/s00018-009-0208-y. Epub 2009 Nov 27. Review.

PMID:
19943077
33.

The trans-Golgi proteins SCLIP and SCG10 interact with chromogranin A to regulate neuroendocrine secretion.

Mahapatra NR, Taupenot L, Courel M, Mahata SK, O'Connor DT.

Biochemistry. 2008 Jul 8;47(27):7167-78. doi: 10.1021/bi7019996. Epub 2008 Jun 13.

34.

Catestatin is a novel endogenous peptide that regulates cardiac function and blood pressure.

Mahapatra NR.

Cardiovasc Res. 2008 Dec 1;80(3):330-8. doi: 10.1093/cvr/cvn155. Epub 2008 Jun 9. Review.

PMID:
18541522
35.

Organic anion transporter 3 contributes to the regulation of blood pressure.

Vallon V, Eraly SA, Wikoff WR, Rieg T, Kaler G, Truong DM, Ahn SY, Mahapatra NR, Mahata SK, Gangoiti JA, Wu W, Barshop BA, Siuzdak G, Nigam SK.

J Am Soc Nephrol. 2008 Sep;19(9):1732-40. doi: 10.1681/ASN.2008020180. Epub 2008 May 28.

36.

Common genetic variants in the chromogranin A promoter alter autonomic activity and blood pressure.

Chen Y, Rao F, Rodriguez-Flores JL, Mahapatra NR, Mahata M, Wen G, Salem RM, Shih PA, Das M, Schork NJ, Ziegler MG, Hamilton BA, Mahata SK, O'Connor DT.

Kidney Int. 2008 Jul;74(1):115-25. doi: 10.1038/ki.2008.113. Epub 2008 Apr 23. Erratum in: Kidney Int. 2009 Jun;75(11):1237. Kidney Int. 2009 Jun 1;75(11):1237.

37.

Catecholamine storage vesicles and the metabolic syndrome: The role of the chromogranin A fragment pancreastatin.

Zhang K, Rao F, Wen G, Salem RM, Vaingankar S, Mahata M, Mahapatra NR, Lillie EO, Cadman PE, Friese RS, Hamilton BA, Hook VY, Mahata SK, Taupenot L, O'Connor DT.

Diabetes Obes Metab. 2006 Nov;8(6):621-33. Review.

PMID:
17026486
38.
39.
40.

Pleiotropic effects of novel trans-acting loci influencing human sympathochromaffin secretion.

Greenwood TA, Rao F, Stridsberg M, Mahapatra NR, Mahata M, Lillie EO, Mahata SK, Taupenot L, Schork NJ, O'Connor DT.

Physiol Genomics. 2006 May 16;25(3):470-9. Epub 2006 Mar 22.

PMID:
16554546
41.

Hypertension from targeted ablation of chromogranin A can be rescued by the human ortholog.

Mahapatra NR, O'Connor DT, Vaingankar SM, Hikim AP, Mahata M, Ray S, Staite E, Wu H, Gu Y, Dalton N, Kennedy BP, Ziegler MG, Ross J, Mahata SK.

J Clin Invest. 2005 Jul;115(7):1942-52.

42.

Common genetic mechanisms of blood pressure elevation in two independent rodent models of human essential hypertension.

Friese RS, Mahboubi P, Mahapatra NR, Mahata SK, Schork NJ, Schmid-Schönbein GW, O'Connor DT.

Am J Hypertens. 2005 May;18(5 Pt 1):633-52.

PMID:
15882546
43.

Integration of metal-resistant determinants from the plasmid of an Acidocella strain into the chromosome of Escherichia coli DH5alpha.

Ghosh S, Mahapatra NR, Nandi S, Banerjee PC.

Curr Microbiol. 2005 Jan;50(1):28-32. Epub 2005 Jan 19.

PMID:
15702259
44.

A dynamic pool of calcium in catecholamine storage vesicles. Exploration in living cells by a novel vesicle-targeted chromogranin A-aequorin chimeric photoprotein.

Mahapatra NR, Mahata M, Hazra PP, McDonough PM, O'Connor DT, Mahata SK.

J Biol Chem. 2004 Dec 3;279(49):51107-21. Epub 2004 Sep 9.

45.

The catecholamine release-inhibitory "catestatin" fragment of chromogranin a: naturally occurring human variants with different potencies for multiple chromaffin cell nicotinic cholinergic responses.

Mahata SK, Mahata M, Wen G, Wong WB, Mahapatra NR, Hamilton BA, O'Connor DT.

Mol Pharmacol. 2004 Nov;66(5):1180-91. Epub 2004 Aug 23.

PMID:
15326220
46.

Neuroendocrine transcriptome in genetic hypertension: multiple changes in diverse adrenal physiological systems.

Fries RS, Mahboubi P, Mahapatra NR, Mahata SK, Schork NJ, Schmid-Schoenbein GW, O'Connor DT.

Hypertension. 2004 Jun;43(6):1301-11.

PMID:
15166183
47.

Conformational preferences and activities of peptides from the catecholamine release-inhibitory (catestatin) region of chromogranin A.

Preece NE, Nguyen M, Mahata M, Mahata SK, Mahapatra NR, Tsigelny I, O'Connor DT.

Regul Pept. 2004 Apr 15;118(1-2):75-87.

PMID:
14759560
48.

Both rare and common polymorphisms contribute functional variation at CHGA, a regulator of catecholamine physiology.

Wen G, Mahata SK, Cadman P, Mahata M, Ghosh S, Mahapatra NR, Rao F, Stridsberg M, Smith DW, Mahboubi P, Schork NJ, O'Connor DT, Hamilton BA.

Am J Hum Genet. 2004 Feb;74(2):197-207. Epub 2004 Jan 12.

49.
50.

Generation of novel plasmids in Escherichia coli S17-1(pSUP106).

Mahapatra NR, Ghosh S, Sarkar PK, Banerjee PC.

Curr Microbiol. 2003 May;46(5):318-23.

PMID:
12732957

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