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Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.

Smith KN, Miller SC, Varani G, Calabrese JM, Magnuson T.

Genetics. 2019 Dec;213(4):1093-1110. doi: 10.1534/genetics.119.302661. Review.


Opioid tolerance impacts compliance with enhanced recovery pathway after major abdominal surgery.

Owodunni OP, Zaman MH, Ighani M, Grant MC, Bettick D, Sateri S, Magnuson T, Gearhart S.

Surgery. 2019 Dec;166(6):1055-1060. doi: 10.1016/j.surg.2019.08.001. Epub 2019 Sep 13.


Implementation of an enhanced recovery program for bariatric surgery.

Taylor J, Canner J, Cronauer C, Prior D, Coker A, Nguyen H, Magnuson T, Adrales G, Schweitzer M.

Surg Endosc. 2019 Aug 1. doi: 10.1007/s00464-019-07045-w. [Epub ahead of print]


lncRNA-Induced Spread of Polycomb Controlled by Genome Architecture, RNA Abundance, and CpG Island DNA.

Schertzer MD, Braceros KCA, Starmer J, Cherney RE, Lee DM, Salazar G, Justice M, Bischoff SR, Cowley DO, Ariel P, Zylka MJ, Dowen JM, Magnuson T, Calabrese JM.

Mol Cell. 2019 Aug 8;75(3):523-537.e10. doi: 10.1016/j.molcel.2019.05.028. Epub 2019 Jun 27.


Changes in Gut Microbiome after Bariatric Surgery Versus Medical Weight Loss in a Pilot Randomized Trial.

Lee CJ, Florea L, Sears CL, Maruthur N, Potter JJ, Schweitzer M, Magnuson T, Clark JM.

Obes Surg. 2019 Oct;29(10):3239-3245. doi: 10.1007/s11695-019-03976-4.


Obesity is associated with copper elevation in serum and tissues.

Yang H, Liu CN, Wolf RM, Ralle M, Dev S, Pierson H, Askin F, Steele KE, Magnuson TH, Schweitzer MA, Wong GW, Lutsenko S.

Metallomics. 2019 Aug 1;11(8):1363-1371. doi: 10.1039/c9mt00148d. Epub 2019 Jun 28.


Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate male germline transcription in the mouse.

Menon DU, Shibata Y, Mu W, Magnuson T.

Development. 2019 Jul 5;146(19). pii: dev174094. doi: 10.1242/dev.174094.


Comparative Effects of Medical Versus Surgical Weight Loss on Body Composition: a Pilot Randomized Trial.

Varma S, Lee CJ, Brown TT, Maruthur NM, Schweitzer M, Magnuson T, Kamel I, Clark JM.

Obes Surg. 2019 Aug;29(8):2503-2510. doi: 10.1007/s11695-019-03879-4.


Obesity Expands a Distinct Population of T Cells in Adipose Tissue and Increases Vulnerability to Infection.

Misumi I, Starmer J, Uchimura T, Beck MA, Magnuson T, Whitmire JK.

Cell Rep. 2019 Apr 9;27(2):514-524.e5. doi: 10.1016/j.celrep.2019.03.030.


Compliance to an enhanced recovery pathway among patients with a high frailty index after major gastrointestinal surgery results in improved 30-day outcomes.

Hampton JP, Owodunni OP, Bettick D, Chen SY, Sateri S, Magnuson T, Gearhart SL.

Surgery. 2019 Jul;166(1):75-81. doi: 10.1016/j.surg.2019.01.027. Epub 2019 Mar 15.


A statistical method for joint estimation of cis-eQTLs and parent-of-origin effects under family trio design.

Zhabotynsky V, Inoue K, Magnuson T, Mauro Calabrese J, Sun W.

Biometrics. 2019 Sep;75(3):864-874. doi: 10.1111/biom.13026. Epub 2019 Apr 1.


Cytokine, Chemokine, and Cytokine Receptor Changes Are Associated With Metabolic Improvements After Bariatric Surgery.

Wolf RM, Jaffe AE, Steele KE, Schweitzer MA, Magnuson TH, Wolfe A, Wong GW.

J Clin Endocrinol Metab. 2019 Mar 1;104(3):947-956. doi: 10.1210/jc.2018-02245.


EZH2 variants differentially regulate polycomb repressive complex 2 in histone methylation and cell differentiation.

Mu W, Starmer J, Yee D, Magnuson T.

Epigenetics Chromatin. 2018 Dec 6;11(1):71. doi: 10.1186/s13072-018-0242-9.


Interactome determination of a Long Noncoding RNA implicated in Embryonic Stem Cell Self-Renewal.

Smith KN, Starmer J, Magnuson T.

Sci Rep. 2018 Dec 4;8(1):17568. doi: 10.1038/s41598-018-34864-z.


SWI/SNF remains localized to chromatin in the presence of SCHLAP1.

Raab JR, Smith KN, Spear CC, Manner CJ, Calabrese JM, Magnuson T.

Nat Genet. 2019 Jan;51(1):26-29. doi: 10.1038/s41588-018-0272-z. Epub 2018 Dec 3.


Robot-assisted versus laparoscopic Roux-en-Y gastric bypass and sleeve gastrectomy: a propensity score-matched comparative analysis using the 2015-2016 MBSAQIP database.

Sebastian R, Howell MH, Chang KH, Adrales G, Magnuson T, Schweitzer M, Nguyen H.

Surg Endosc. 2019 May;33(5):1600-1612. doi: 10.1007/s00464-018-6422-7. Epub 2018 Sep 17.


Metal Transformation by a Novel Pelosinus Isolate From a Subsurface Environment.

Ray AE, Connon SA, Neal AL, Fujita Y, Cummings DE, Ingram JC, Magnuson TS.

Front Microbiol. 2018 Aug 17;9:1689. doi: 10.3389/fmicb.2018.01689. eCollection 2018.


Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription.

Dronamraju R, Hepperla AJ, Shibata Y, Adams AT, Magnuson T, Davis IJ, Strahl BD.

Mol Cell. 2018 Jun 21;70(6):1054-1066.e4. doi: 10.1016/j.molcel.2018.05.020.


High Compliance to an Enhanced Recovery Pathway for Patients ≥65 Years Undergoing Major Small and Large Intestinal Surgery Is Associated With Improved Postoperative Outcomes.

Owodunni OP, Hampton J, Bettick D, Sateri S, Magnuson T, Wick E, Psoter KJ, Gearhart SL.

Ann Surg. 2019 Dec;270(6):1117-1123. doi: 10.1097/SLA.0000000000002872.


The incidence and risk factors associated with developing symptoms of hypoglycemia after bariatric surgery.

Lee CJ, Brown TT, Schweitzer M, Magnuson T, Clark JM.

Surg Obes Relat Dis. 2018 Jun;14(6):797-802. doi: 10.1016/j.soard.2018.01.028. Epub 2018 Jan 31.


Endoscopic Management of Recalcitrant Marginal Ulcers by Covering the Ulcer Bed.

Barola S, Fayad L, Hill C, Magnuson T, Schweitzer M, Singh V, Chen YI, Ngamruengphong S, Khashab MA, Kalloo AN, Kumbhari V.

Obes Surg. 2018 Aug;28(8):2252-2260. doi: 10.1007/s11695-018-3162-7.


Identification of Two Distinct Classes of the Human INO80 Complex Genome-Wide.

Runge JS, Raab JR, Magnuson T.

G3 (Bethesda). 2018 Mar 28;8(4):1095-1102. doi: 10.1534/g3.117.300504. Erratum in: G3 (Bethesda). 2018 Jul 2;8(7):2537.


Co-regulation of transcription by BRG1 and BRM, two mutually exclusive SWI/SNF ATPase subunits.

Raab JR, Runge JS, Spear CC, Magnuson T.

Epigenetics Chromatin. 2017 Dec 22;10(1):62. doi: 10.1186/s13072-017-0167-8.


The histone demethylase Kdm6b regulates a mature gene expression program in differentiating cerebellar granule neurons.

Wijayatunge R, Liu F, Shpargel KB, Wayne NJ, Chan U, Boua JV, Magnuson T, West AE.

Mol Cell Neurosci. 2018 Mar;87:4-17. doi: 10.1016/j.mcn.2017.11.005. Epub 2017 Dec 15. Review.


UTX-guided neural crest function underlies craniofacial features of Kabuki syndrome.

Shpargel KB, Starmer J, Wang C, Ge K, Magnuson T.

Proc Natl Acad Sci U S A. 2017 Oct 24;114(43):E9046-E9055. doi: 10.1073/pnas.1705011114. Epub 2017 Oct 9.


Weight regain in patients with symptoms of post-bariatric surgery hypoglycemia.

Varma S, Clark JM, Schweitzer M, Magnuson T, Brown TT, Lee CJ.

Surg Obes Relat Dis. 2017 Oct;13(10):1728-1734. doi: 10.1016/j.soard.2017.06.004. Epub 2017 Jun 23.


The Electron Bifurcating FixABCX Protein Complex from Azotobacter vinelandii: Generation of Low-Potential Reducing Equivalents for Nitrogenase Catalysis.

Ledbetter RN, Garcia Costas AM, Lubner CE, Mulder DW, Tokmina-Lukaszewska M, Artz JH, Patterson A, Magnuson TS, Jay ZJ, Duan HD, Miller J, Plunkett MH, Hoben JP, Barney BM, Carlson RP, Miller AF, Bothner B, King PW, Peters JW, Seefeldt LC.

Biochemistry. 2017 Aug 15;56(32):4177-4190. doi: 10.1021/acs.biochem.7b00389. Epub 2017 Aug 3.


Inversion Technique for the Removal of Partially Covered Self-Expandable Metallic Stents.

Hill C, Khalil BK, Barola S, Agnihotri A, Moran RA, Chen YI, Ngamruengphong S, Singh VK, Frame LA, Schweitzer MA, Magnuson TH, Khashab MA, Okolo PI 3rd, Kumbhari V.

Obes Surg. 2018 Jan;28(1):161-168. doi: 10.1007/s11695-017-2811-6.


The Role of Laboratory Testing in Differentiating Type 1 Diabetes from Type 2 Diabetes in Patients Undergoing Bariatric Surgery.

Pilla SJ, Maruthur NM, Schweitzer MA, Magnuson TH, Potter JJ, Clark JM, Lee CJ.

Obes Surg. 2018 Jan;28(1):25-30. doi: 10.1007/s11695-017-2804-5.


Long Noncoding RNA Moderates MicroRNA Activity to Maintain Self-Renewal in Embryonic Stem Cells.

Smith KN, Starmer J, Miller SC, Sethupathy P, Magnuson T.

Stem Cell Reports. 2017 Jul 11;9(1):108-121. doi: 10.1016/j.stemcr.2017.05.005. Epub 2017 Jun 1.


Outcomes of Partnered Individuals Undergoing Bariatric Surgery Together: A Single Institution Case Series.

Mehta A, Hutfless S, Blair AB, Karcher M, Nasatka S, Schweitzer M, Magnuson T, Nguyen HT.

Obes Surg. 2017 Aug;27(8):2207-2210. doi: 10.1007/s11695-017-2728-0.


Variation in Biological Soil Crust Bacterial Abundance and Diversity as a Function of Climate in Cold Steppe Ecosystems in the Intermountain West, USA.

Blay ES, Schwabedissen SG, Magnuson TS, Aho KA, Sheridan PP, Lohse KA.

Microb Ecol. 2017 Oct;74(3):691-700. doi: 10.1007/s00248-017-0981-3. Epub 2017 Apr 13.


EZH1 in germ cells safeguards the function of PRC2 during spermatogenesis.

Mu W, Starmer J, Shibata Y, Yee D, Magnuson T.

Dev Biol. 2017 Apr 15;424(2):198-207. doi: 10.1016/j.ydbio.2017.02.017. Epub 2017 Feb 28.


Endoscopic Suturing for Massively Bleeding Marginal Ulcer 10 days Post Roux-en-Y Gastric Bypass.

Barola S, Magnuson T, Schweitzer M, Chen YI, Ngamruengphong S, Khashab MA, Kumbhari V.

Obes Surg. 2017 May;27(5):1394-1396. doi: 10.1007/s11695-017-2621-x.


CTRP7 deletion attenuates obesity-linked glucose intolerance, adipose tissue inflammation, and hepatic stress.

Petersen PS, Lei X, Wolf RM, Rodriguez S, Tan SY, Little HC, Schweitzer MA, Magnuson TH, Steele KE, Wong GW.

Am J Physiol Endocrinol Metab. 2017 Apr 1;312(4):E309-E325. doi: 10.1152/ajpendo.00344.2016. Epub 2017 Feb 21.


Proxy measures of vitamin D status - season and latitude - correlate with adverse outcomes after bariatric surgery in the Nationwide Inpatient Sample, 2001-2010: a retrospective cohort study.

Peterson LA, Canner JK, Cheskin LJ, Prokopowicz GP, Schweitzer MA, Magnuson TH, Steele KE.

Obes Sci Pract. 2015 Dec;1(2):88-96. Epub 2015 Dec 14.


Pharyngeal collapsibility during sleep is elevated in insulin-resistant females with morbid obesity.

Llanos OL, Galiatsatos P, Guzmán-Vélez E, Patil SP, Smith PL, Magnuson T, Schweitzer M, Steele K, Polotsky VY, Schwartz AR.

Eur Respir J. 2016 Jun;47(6):1718-26. doi: 10.1183/13993003.00918-2015. Epub 2016 Apr 21.


Vitamin D status and supplementation before and after bariatric surgery: a comprehensive literature review.

Peterson LA, Zeng X, Caufield-Noll CP, Schweitzer MA, Magnuson TH, Steele KE.

Surg Obes Relat Dis. 2016 Mar-Apr;12(3):693-702. doi: 10.1016/j.soard.2016.01.001. Epub 2016 Jan 6. Review.


Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains.

Starmer J, Magnuson T.

BMC Bioinformatics. 2016 Mar 24;17:144. doi: 10.1186/s12859-016-0991-z.


Preparing Corrections Staff for the Future: Results of a 2-Day Training About Aging Inmates.

Masters JL, Magnuson TM, Bayer BL, Potter JF, Falkowski PP.

J Correct Health Care. 2016 Apr;22(2):118-28. doi: 10.1177/1078345816634667.


C1q/TNF-Related Protein-9 (CTRP9) Levels Are Associated With Obesity and Decrease Following Weight Loss Surgery.

Wolf RM, Steele KE, Peterson LA, Zeng X, Jaffe AE, Schweitzer MA, Magnuson TH, Wong GW.

J Clin Endocrinol Metab. 2016 May;101(5):2211-7. doi: 10.1210/jc.2016-1027. Epub 2016 Mar 16.


Epigenetic Regulation by ATP-Dependent Chromatin-Remodeling Enzymes: SNF-ing Out Crosstalk.

Runge JS, Raab JR, Magnuson T.

Curr Top Dev Biol. 2016;117:1-13. doi: 10.1016/bs.ctdb.2015.10.009. Epub 2016 Jan 7. Review.


Treatment for Vitamin D Deficiency Prior to Bariatric Surgery: a Prospective Cohort Study.

Peterson LA, Cheskin LJ, Schweitzer MA, Magnuson TH, Steele KE.

Obes Surg. 2016 May;26(5):1146-9. doi: 10.1007/s11695-016-2115-2.


Rad18 confers hematopoietic progenitor cell DNA damage tolerance independently of the Fanconi Anemia pathway in vivo.

Yang Y, Poe JC, Yang L, Fedoriw A, Desai S, Magnuson T, Li Z, Fedoriw Y, Araki K, Gao Y, Tateishi S, Sarantopoulos S, Vaziri C.

Nucleic Acids Res. 2016 May 19;44(9):4174-88. doi: 10.1093/nar/gkw072. Epub 2016 Feb 15.


The SWI/SNF BAF-A complex is essential for neural crest development.

Chandler RL, Magnuson T.

Dev Biol. 2016 Mar 1;411(1):15-24. doi: 10.1016/j.ydbio.2016.01.015. Epub 2016 Jan 22.


Genome-Wide Transcriptional Regulation Mediated by Biochemically Distinct SWI/SNF Complexes.

Raab JR, Resnick S, Magnuson T.

PLoS Genet. 2015 Dec 30;11(12):e1005748. doi: 10.1371/journal.pgen.1005748. eCollection 2015 Dec.


The Mouse INO80 Chromatin-Remodeling Complex Is an Essential Meiotic Factor for Spermatogenesis.

Serber DW, Runge JS, Menon DU, Magnuson T.

Biol Reprod. 2016 Jan;94(1):8. doi: 10.1095/biolreprod.115.135533. Epub 2015 Nov 25.


GERD Is Associated with Higher Long-Term Reoperation Rates After Bariatric Surgery.

Obeid T, Krishnan A, Abdalla G, Schweitzer M, Magnuson T, Steele KE.

J Gastrointest Surg. 2016 Jan;20(1):119-24; discussion 124.


Global gene expression profiling of a mouse model of ovarian clear cell carcinoma caused by ARID1A and PIK3CA mutations implicates a role for inflammatory cytokine signaling.

Chandler RL, Raab JR, Vernon M, Magnuson T, Schisler JC.

Genom Data. 2015 Jul 14;5:329-32. doi: 10.1016/j.gdata.2015.06.027. eCollection 2015 Sep.


Early hospital readmission after bariatric surgery.

Aman MW, Stem M, Schweitzer MA, Magnuson TH, Lidor AO.

Surg Endosc. 2016 Jun;30(6):2231-8. doi: 10.1007/s00464-015-4483-4. Epub 2015 Oct 19.


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