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Items: 1 to 50 of 56

1.

SEGGA: a toolset for rapid automated analysis of epithelial cell polarity and dynamics.

Farrell DL, Weitz O, Magnasco MO, Zallen JA.

Development. 2017 May 1;144(9):1725-1734. doi: 10.1242/dev.146837.

2.

Stable encoding of sounds over a broad range of statistical parameters in the auditory cortex.

Blackwell JM, Taillefumier TO, Natan RG, Carruthers IM, Magnasco MO, Geffen MN.

Eur J Neurosci. 2016 Mar;43(6):751-64. doi: 10.1111/ejn.13144. Epub 2016 Jan 20.

3.

Structural self-assembly and avalanchelike dynamics in locally adaptive networks.

Gräwer J, Modes CD, Magnasco MO, Katifori E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012801. Epub 2015 Jul 2.

PMID:
26274219
4.

Loss of Consciousness Is Associated with Stabilization of Cortical Activity.

Solovey G, Alonso LM, Yanagawa T, Fujii N, Magnasco MO, Cecchi GA, Proekt A.

J Neurosci. 2015 Jul 29;35(30):10866-77. doi: 10.1523/JNEUROSCI.4895-14.2015.

5.

Dynamical criticality during induction of anesthesia in human ECoG recordings.

Alonso LM, Proekt A, Schwartz TH, Pryor KO, Cecchi GA, Magnasco MO.

Front Neural Circuits. 2014 Mar 25;8:20. doi: 10.3389/fncir.2014.00020. eCollection 2014.

6.

Humans can discriminate more than 1 trillion olfactory stimuli.

Bushdid C, Magnasco MO, Vosshall LB, Keller A.

Science. 2014 Mar 21;343(6177):1370-2. doi: 10.1126/science.1249168.

7.

Degraded time-frequency acuity to time-reversed notes.

Oppenheim JN, Isakov P, Magnasco MO.

PLoS One. 2013 Jun 17;8(6):e65386. doi: 10.1371/journal.pone.0065386. Print 2013.

8.

A phase transition in the first passage of a Brownian process through a fluctuating boundary with implications for neural coding.

Taillefumier T, Magnasco MO.

Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):E1438-43. doi: 10.1073/pnas.1212479110. Epub 2013 Mar 27.

9.

Human time-frequency acuity beats the Fourier uncertainty principle.

Oppenheim JN, Magnasco MO.

Phys Rev Lett. 2013 Jan 25;110(4):044301. Epub 2013 Jan 23.

PMID:
25166166
10.

Topological phase transition in the Scheidegger model of river networks.

Oppenheim JN, Magnasco MO.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Aug;86(2 Pt 1):021134. Epub 2012 Aug 29.

PMID:
23005749
11.

Input-dependent wave attenuation in a critically-balanced model of cortex.

Yan XH, Magnasco MO.

PLoS One. 2012;7(7):e41419. doi: 10.1371/journal.pone.0041419. Epub 2012 Jul 25.

12.

Self-Regulated Dynamical Criticality in Human ECoG.

Solovey G, Miller KJ, Ojemann JG, Magnasco MO, Cecchi GA.

Front Integr Neurosci. 2012 Jul 19;6:44. doi: 10.3389/fnint.2012.00044. eCollection 2012.

13.

Fast, automated implementation of temporally precise blind deconvolution of multiphasic excitatory postsynaptic currents.

Andor-Ardó D, Keen EC, Hudspeth AJ, Magnasco MO.

PLoS One. 2012;7(6):e38198. doi: 10.1371/journal.pone.0038198. Epub 2012 Jun 26.

14.

Quantifying loopy network architectures.

Katifori E, Magnasco MO.

PLoS One. 2012;7(6):e37994. doi: 10.1371/journal.pone.0037994. Epub 2012 Jun 6.

15.

Auditory perception of self-similarity in water sounds.

Geffen MN, Gervain J, Werker JF, Magnasco MO.

Front Integr Neurosci. 2011 May 11;5:15. doi: 10.3389/fnint.2011.00015. eCollection 2011.

16.

A fast L(p) spike alignment metric.

Dubbs AJ, Seiler BA, Magnasco MO.

Neural Comput. 2010 Nov;22(11):2785-808. doi: 10.1162/NECO_a_00026.

PMID:
20804383
17.

Interactions between hair cells shape spontaneous otoacoustic emissions in a model of the tokay gecko's cochlea.

Gelfand M, Piro O, Magnasco MO, Hudspeth AJ.

PLoS One. 2010 Jun 15;5(6):e11116. doi: 10.1371/journal.pone.0011116.

18.

Enhancement of transport selectivity through nano-channels by non-specific competition.

Zilman A, Di Talia S, Jovanovic-Talisman T, Chait BT, Rout MP, Magnasco MO.

PLoS Comput Biol. 2010 Jun 10;6(6):e1000804. doi: 10.1371/journal.pcbi.1000804.

19.

Damage and fluctuations induce loops in optimal transport networks.

Katifori E, Szöllosi GJ, Magnasco MO.

Phys Rev Lett. 2010 Jan 29;104(4):048704. Epub 2010 Jan 29.

PMID:
20366746
20.

Modeling the resonant release of synaptic transmitter by hair cells as an example of biological oscillators with cooperative steps.

Andor-Ardó D, Hudspeth AJ, Magnasco MO, Piro O.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2019-24. doi: 10.1073/pnas.0914372107. Epub 2010 Jan 13.

21.

Self-tuned critical anti-Hebbian networks.

Magnasco MO, Piro O, Cecchi GA.

Phys Rev Lett. 2009 Jun 26;102(25):258102. Epub 2009 Jun 22.

PMID:
19659122
22.

Decoding spike timing: the differential reverse-correlation method.

Tkacik G, Magnasco MO.

Biosystems. 2008 Jul-Aug;93(1-2):90-100. doi: 10.1016/j.biosystems.2008.04.011. Epub 2008 May 1.

23.

Is an eclipse described in the Odyssey?

Baikouzis C, Magnasco MO.

Proc Natl Acad Sci U S A. 2008 Jul 1;105(26):8823-8. doi: 10.1073/pnas.0803317105. Epub 2008 Jun 24.

24.

Detecting artifacts on SNP chips.

Pellegrino M, Suárez-Fariñas M, Magnasco MO, Wittkowski KM.

Conf Proc IEEE Eng Med Biol Soc. 2006;1:4100-2.

PMID:
17947067
25.

Comparing microarray studies.

Suárez-Fariñas M, Magnasco MO.

Methods Mol Biol. 2007;377:139-52. Review.

PMID:
17634614
26.

Efficiency, selectivity, and robustness of nucleocytoplasmic transport.

Zilman A, Di Talia S, Chait BT, Rout MP, Magnasco MO.

PLoS Comput Biol. 2007 Jul;3(7):e125.

27.

Structure, scaling, and phase transition in the optimal transport network.

Bohn S, Magnasco MO.

Phys Rev Lett. 2007 Feb 23;98(8):088702. Epub 2007 Feb 21.

PMID:
17359138
28.

Sparse time-frequency representations.

Gardner TJ, Magnasco MO.

Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6094-9. Epub 2006 Apr 6.

29.

Harshlight: a "corrective make-up" program for microarray chips.

Suárez-Fariñas M, Pellegrino M, Wittkowski KM, Magnasco MO.

BMC Bioinformatics. 2005 Dec 10;6:294.

30.

Comparing independent microarray studies: the case of human embryonic stem cells.

Suárez-Fariñas M, Noggle S, Heke M, Hemmati-Brivanlou A, Magnasco MO.

BMC Genomics. 2005 Jul 22;6:99.

31.
32.

Virtual gating and nuclear transport: the hole picture.

Rout MP, Aitchison JD, Magnasco MO, Chait BT.

Trends Cell Biol. 2003 Dec;13(12):622-8. Review.

PMID:
14624840
33.

Bubbling and on-off intermittency in bailout embeddings.

Cartwright JH, Magnasco MO, Piro O, Tuval I.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul;68(1 Pt 2):016217. Epub 2003 Jul 21.

PMID:
12935235
34.

Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays.

Naef F, Magnasco MO.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jul;68(1 Pt 1):011906. Epub 2003 Jul 16.

PMID:
12935175
35.

Noise- and inertia-induced inhomogeneity in the distribution of small particles in fluid flows.

Cartwright JH, Magnasco MO, Piro O.

Chaos. 2002 Jun;12(2):489-495.

PMID:
12779579
36.

A wave traveling over a Hopf instability shapes the cochlear tuning curve.

Magnasco MO.

Phys Rev Lett. 2003 Feb 7;90(5):058101. Epub 2003 Feb 4.

PMID:
12633400
37.

Bailout embeddings and neutrally buoyant particles in three-dimensional flows.

Cartwright JH, Magnasco MO, Piro O, Tuval I.

Phys Rev Lett. 2002 Dec 23;89(26):264501. Epub 2002 Dec 12.

PMID:
12484826
38.

Bailout embeddings, targeting of invariant tori, and the control of Hamiltonian chaos.

Cartwright JH, Magnasco MO, Piro O.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Apr;65(4 Pt 2A):045203. Epub 2002 Apr 3.

PMID:
12005907
39.

Unsupervised learning and adaptation in a model of adult neurogenesis.

Cecchi GA, Petreanu LT, Alvarez-Buylla A, Magnasco MO.

J Comput Neurosci. 2001 Sep-Oct;11(2):175-82.

PMID:
11717533
40.

Evidence of a Hopf bifurcation in frog hair cells.

Ospeck M, Eguíluz VM, Magnasco MO.

Biophys J. 2001 Jun;80(6):2597-607.

41.

Kinetic proofreading can explain the supression of supercoiling of circular DNA molecules by type-II topoisomerases.

Yan J, Magnasco MO, Marko JF.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Mar;63(3 Pt 1):031909. Epub 2001 Feb 27.

PMID:
11308680
42.

An automated system for the mapping and quantitative analysis of immunocytochemistry of an inducible nuclear protein.

Cecchi GA, Ribeiro S, Mello CV, Magnasco MO.

J Neurosci Methods. 1999 Mar 1;87(2):147-58.

PMID:
11230811
43.

On a common circle: natural scenes and Gestalt rules.

Sigman M, Cecchi GA, Gilbert CD, Magnasco MO.

Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1935-40. Epub 2001 Feb 6.

44.

Noise-induced memory in extended excitable systems.

Chialvo DR, Cecchi GA, Magnasco MO.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 2000 May;61(5 Pt B):5654-7.

PMID:
11031622
45.

Essential nonlinearities in hearing.

Eguíluz VM, Ospeck M, Choe Y, Hudspeth AJ, Magnasco MO.

Phys Rev Lett. 2000 May 29;84(22):5232-5.

PMID:
10990910
46.

Noise in neurons is message dependent.

Cecchi GA, Sigman M, Alonso JM, Martínez L, Chialvo DR, Magnasco MO.

Proc Natl Acad Sci U S A. 2000 May 9;97(10):5557-61.

47.

A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases.

Yan J, Magnasco MO, Marko JF.

Nature. 1999 Oct 28;401(6756):932-5.

PMID:
10553912
48.

Contingency loci, mutator alleles, and their interactions. Synergistic strategies for microbial evolution and adaptation in pathogenesis.

Field D, Magnasco MO, Moxon ER, Metzgar D, Tanaka MM, Wills C, Thaler DS.

Ann N Y Acad Sci. 1999 May 18;870:378-82. Review. No abstract available.

PMID:
10415502
49.

A model for amplification of hair-bundle motion by cyclical binding of Ca2+ to mechanoelectrical-transduction channels.

Choe Y, Magnasco MO, Hudspeth AJ.

Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15321-6.

50.

Toward a song code: evidence for a syllabic representation in the canary brain.

Ribeiro S, Cecchi GA, Magnasco MO, Mello CV.

Neuron. 1998 Aug;21(2):359-71.

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