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Items: 1 to 50 of 79

1.

Acute kidney injury promotes development of papillary renal cell adenoma and carcinoma from renal progenitor cells.

Peired AJ, Antonelli G, Angelotti ML, Allinovi M, Guzzi F, Sisti A, Semeraro R, Conte C, Mazzinghi B, Nardi S, Melica ME, De Chiara L, Lazzeri E, Lasagni L, Lottini T, Landini S, Giglio S, Mari A, Di Maida F, Antonelli A, Porpiglia F, Schiavina R, Ficarra V, Facchiano D, Gacci M, Serni S, Carini M, Netto GJ, Roperto RM, Magi A, Christiansen CF, Rotondi M, Liapis H, Anders HJ, Minervini A, Raspollini MR, Romagnani P.

Sci Transl Med. 2020 Mar 25;12(536). pii: eaaw6003. doi: 10.1126/scitranslmed.aaw6003.

PMID:
32213630
2.

Genetic and nutritional factors determining circulating levels of lipoprotein(a): results of the "Montignoso Study".

Sereni A, Sticchi E, Gori AM, Magi A, Della Latta D, Volta A, Murri A, Jamagidze G, Chiappino D, Abbate R, Gensini GF, Marcucci R, Sofi F, Giusti B.

Intern Emerg Med. 2020 Jan 28. doi: 10.1007/s11739-020-02276-5. [Epub ahead of print]

PMID:
31993950
3.

Soft Tissue Cancer Management: Isolated Limb Infusion for Sarcoma.

Teras J, Mägi A, Teras M, Pata P, Teras RM, Randhawa N, Kalling K.

Visc Med. 2019 Dec;35(6):373-379. doi: 10.1159/000495888. Epub 2019 Feb 13.

4.

First Eastern European experience of isolated limb infusion for in-transit metastatic melanoma confined to the limb: Is it still an effective treatment option in the modern era?

Teras J, Kroon HM, Thompson JF, Teras M, Pata P, Mägi A, Teras RM, Boudinot SR.

Eur J Surg Oncol. 2020 Feb;46(2):272-276. doi: 10.1016/j.ejso.2019.10.039. Epub 2019 Nov 2.

PMID:
31748147
5.

Long Reads, Short Time: Feasibility of Prenatal Sample Karyotyping by Nanopore Genome Sequencing.

Bartalucci N, Romagnoli S, Contini E, Marseglia G, Magi A, Guglielmelli P, Pelo E, Vannucchi AM.

Clin Chem. 2019 Dec;65(12):1605-1608. doi: 10.1373/clinchem.2019.310805. Epub 2019 Oct 23. No abstract available.

PMID:
31645339
6.

VISOR: a versatile haplotype-aware structural variant simulator for short- and long-read sequencing.

Bolognini D, Sanders A, Korbel JO, Magi A, Benes V, Rausch T.

Bioinformatics. 2020 Feb 15;36(4):1267-1269. doi: 10.1093/bioinformatics/btz719.

PMID:
31589307
7.

Versatile Quality Control Methods for Nanopore Sequencing.

Bolognini D, Semeraro R, Magi A.

Evol Bioinform Online. 2019 Jul 23;15:1176934319863068. doi: 10.1177/1176934319863068. eCollection 2019.

8.

The ion channels and transporters gene expression profile indicates a shift in excitability and metabolisms during malignant progression of Follicular Lymphoma.

Magi A, Masselli M, Sala C, Guerriero A, Laise P, Puccini B, Rigacci L, Breschi C, Crociani O, Pillozzi S, Arcangeli A.

Sci Rep. 2019 Jun 13;9(1):8586. doi: 10.1038/s41598-019-44661-x.

9.

The Role of Cognitive Emotion Regulation Strategies in Problem Gaming Among Adolescents: A Nationally Representative Survey Study.

Kökönyei G, Kocsel N, Király O, Griffiths MD, Galambos A, Magi A, Paksi B, Demetrovics Z.

Front Psychiatry. 2019 Apr 29;10:273. doi: 10.3389/fpsyt.2019.00273. eCollection 2019.

10.

NanoR: A user-friendly R package to analyze and compare nanopore sequencing data.

Bolognini D, Bartalucci N, Mingrino A, Vannucchi AM, Magi A.

PLoS One. 2019 May 9;14(5):e0216471. doi: 10.1371/journal.pone.0216471. eCollection 2019.

11.

National guidelines for dental diagnostic imaging in the developmental age.

Firetto MC, Abbinante A, Barbato E, Bellomi M, Biondetti P, Borghesi A, Bossu' M, Cascone P, Corbella D, Di Candido V, Diotallevi P, Farronato G, Federici A, Gagliani M, Granata C, Guerra M, Magi A, Maggio MC, Mirenghi S, Nardone M, Origgi D, Paglia L, Preda L, Rampado O, Rubino L, Salerno S, Sodano A, Torresin A, Strohmenger L.

Radiol Med. 2019 Sep;124(9):887-916. doi: 10.1007/s11547-019-01038-4. Epub 2019 May 4. No abstract available.

PMID:
31055724
12.

PyPore: a python toolbox for nanopore sequencing data handling.

Semeraro R, Magi A.

Bioinformatics. 2019 Nov 1;35(21):4445-4447. doi: 10.1093/bioinformatics/btz269.

PMID:
30993318
13.

RNA sequencing reveals PNN and KCNQ1OT1 as predictive biomarkers of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy.

Mini E, Lapucci A, Perrone G, D'Aurizio R, Napoli C, Brugia M, Landini I, Tassi R, Picariello L, Simi L, Mancini I, Messerini L, Magi A, Pinzani P, Mazzei T, Tonelli F, Nobili S.

Int J Cancer. 2019 Nov 1;145(9):2580-2593. doi: 10.1002/ijc.32326. Epub 2019 Jun 3.

PMID:
30973654
14.

Nano-GLADIATOR: real-time detection of copy number alterations from nanopore sequencing data.

Magi A, Bolognini D, Bartalucci N, Mingrino A, Semeraro R, Giovannini L, Bonifacio S, Parrini D, Pelo E, Mannelli F, Guglielmelli P, Maria Vannucchi A.

Bioinformatics. 2019 Nov 1;35(21):4213-4221. doi: 10.1093/bioinformatics/btz241.

PMID:
30949684
15.

A microRNA profile of pediatric glioblastoma: The role of NUCKS1 upregulation.

Giunti L, Da Ros M, De Gregorio V, Magi A, Landini S, Mazzinghi B, Buccoliero AM, Genitori L, Giglio S, Sardi I.

Mol Clin Oncol. 2019 Mar;10(3):331-338. doi: 10.3892/mco.2019.1795. Epub 2019 Jan 2.

16.

The psychological and genetic factors of the addictive behaviors (PGA) study.

Kotyuk E, Farkas J, Magi A, Eisinger A, Király O, Vereczkei A, Barta C, Griffiths MD, Kökönyei G, Székely A, Sasvári-Székely M, Demetrovics Z.

Int J Methods Psychiatr Res. 2019 Mar;28(1):e1748. doi: 10.1002/mpr.1748. Epub 2018 Nov 6.

17.

Rationale and pre-clinical evidences for the use of autologous cartilage micrografts in cartilage repair.

Viganò M, Tessaro I, Trovato L, Colombini A, Scala M, Magi A, Toto A, Peretti G, de Girolamo L.

J Orthop Surg Res. 2018 Nov 6;13(1):279. doi: 10.1186/s13018-018-0983-y.

18.

Bicuspid Aortic Valve: Role of Multiple Gene Variants in Influencing the Clinical Phenotype.

Sticchi E, De Cario R, Magi A, Giglio S, Provenzano A, Nistri S, Pepe G, Giusti B.

Biomed Res Int. 2018 Sep 5;2018:8386123. doi: 10.1155/2018/8386123. eCollection 2018.

19.

Using XCAVATOR and EXCAVATOR2 to Identify CNVs from WGS, WES, and TS Data.

D'Aurizio R, Semeraro R, Magi A.

Curr Protoc Hum Genet. 2018 Jul 5:e65. doi: 10.1002/cphg.65. [Epub ahead of print]

PMID:
29975818
20.

Xome-Blender: A novel cancer genome simulator.

Semeraro R, Orlandini V, Magi A.

PLoS One. 2018 Apr 5;13(4):e0194472. doi: 10.1371/journal.pone.0194472. eCollection 2018.

21.

A new hybrid approach for MHC genotyping: high-throughput NGS and long read MinION nanopore sequencing, with application to the non-model vertebrate Alpine chamois (Rupicapra rupicapra).

Fuselli S, Baptista RP, Panziera A, Magi A, Guglielmi S, Tonin R, Benazzo A, Bauzer LG, Mazzoni CJ, Bertorelle G.

Heredity (Edinb). 2018 Oct;121(4):293-303. doi: 10.1038/s41437-018-0070-5. Epub 2018 Mar 24.

22.

XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments.

Magi A, Pippucci T, Sidore C.

BMC Genomics. 2017 Sep 21;18(1):747. doi: 10.1186/s12864-017-4137-0.

23.

[The methodology and sample description of the National Survey on Addiction Problems in Hungary 2015 (NSAPH 2015)].

Paksi B, Demetrovics Z, Magi A, Felvinczi K.

Neuropsychopharmacol Hung. 2017 Jun;19(2):55-85. Hungarian.

24.

Genetic Bases of Bicuspid Aortic Valve: The Contribution of Traditional and High-Throughput Sequencing Approaches on Research and Diagnosis.

Giusti B, Sticchi E, De Cario R, Magi A, Nistri S, Pepe G.

Front Physiol. 2017 Aug 24;8:612. doi: 10.3389/fphys.2017.00612. eCollection 2017. Review.

25.

SLMSuite: a suite of algorithms for segmenting genomic profiles.

Orlandini V, Provenzano A, Giglio S, Magi A.

BMC Bioinformatics. 2017 Jun 28;18(1):321. doi: 10.1186/s12859-017-1734-5.

26.

Nanopore sequencing data analysis: state of the art, applications and challenges.

Magi A, Semeraro R, Mingrino A, Giusti B, D'Aurizio R.

Brief Bioinform. 2018 Nov 27;19(6):1256-1272. doi: 10.1093/bib/bbx062.

PMID:
28637243
27.

Exome sequencing of two Italian pedigrees with non-isolated Chiari malformation type I reveals candidate genes for cranio-facial development.

Merello E, Tattini L, Magi A, Accogli A, Piatelli G, Pavanello M, Tortora D, Cama A, Kibar Z, Capra V, De Marco P.

Eur J Hum Genet. 2017 Aug;25(8):952-959. doi: 10.1038/ejhg.2017.71. Epub 2017 May 17.

28.

A novel founder MYO15A frameshift duplication is the major cause of genetic hearing loss in Oman.

Palombo F, Al-Wardy N, Ruscone GA, Oppo M, Kindi MN, Angius A, Al Lamki K, Girotto G, Giangregorio T, Benelli M, Magi A, Seri M, Gasparini P, Cucca F, Sazzini M, Al Khabori M, Pippucci T, Romeo G.

J Hum Genet. 2017 Feb;62(2):259-264. doi: 10.1038/jhg.2016.120. Epub 2016 Oct 13.

PMID:
27734841
29.

Characterization of MinION nanopore data for resequencing analyses.

Magi A, Giusti B, Tattini L.

Brief Bioinform. 2017 Nov 1;18(6):940-953. doi: 10.1093/bib/bbw077.

PMID:
27559152
30.

Editorial: Repetitive Structures in Biological Sequences: Algorithms and Applications.

Pellegrini M, Magi A, Iliopoulos CS.

Front Bioeng Biotechnol. 2016 Aug 4;4:66. doi: 10.3389/fbioe.2016.00066. eCollection 2016. No abstract available.

31.

Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2.

D'Aurizio R, Pippucci T, Tattini L, Giusti B, Pellegrini M, Magi A.

Nucleic Acids Res. 2016 Nov 16;44(20):e154. Epub 2016 Aug 9.

32.

The Association Analysis between ACE and ACTN3 Genes Polymorphisms and Endurance Capacity in Young Cross-Country Skiers: Longitudinal Study.

Mägi A, Unt E, Prans E, Raus L, Eha J, Veraksitš A, Kingo K, Kõks S.

J Sports Sci Med. 2016 May 23;15(2):287-94. eCollection 2016 Jun.

33.

Epilepsy with auditory features: A heterogeneous clinico-molecular disease.

Pippucci T, Licchetta L, Baldassari S, Palombo F, Menghi V, D'Aurizio R, Leta C, Stipa C, Boero G, d'Orsi G, Magi A, Scheffer I, Seri M, Tinuper P, Bisulli F.

Neurol Genet. 2015 May 14;1(1):e5. doi: 10.1212/NXG.0000000000000005. eCollection 2015 Jun.

34.

[Iowa Gambling Task: illustration of a behavioral measurement].

Eisinger A, Magi A, Gyurkovics M, Szabo E, Demetrovics Z, Kokonyei G.

Neuropsychopharmacol Hung. 2016 Mar;18(1):45-55. Hungarian.

35.

Apolipoprotein(a) Kringle-IV Type 2 Copy Number Variation Is Associated with Venous Thromboembolism.

Sticchi E, Magi A, Kamstrup PR, Marcucci R, Prisco D, Martinelli I, Mannucci PM, Abbate R, Giusti B.

PLoS One. 2016 Feb 22;11(2):e0149427. doi: 10.1371/journal.pone.0149427. eCollection 2016.

36.

Detection of Genomic Structural Variants from Next-Generation Sequencing Data.

Tattini L, D'Aurizio R, Magi A.

Front Bioeng Biotechnol. 2015 Jun 25;3:92. doi: 10.3389/fbioe.2015.00092. eCollection 2015. Review.

37.

Characterization and identification of hidden rare variants in the human genome.

Magi A, D'Aurizio R, Palombo F, Cifola I, Tattini L, Semeraro R, Pippucci T, Giusti B, Romeo G, Abbate R, Gensini GF.

BMC Genomics. 2015 Apr 24;16:340. doi: 10.1186/s12864-015-1481-9.

38.

Detection of runs of homozygosity from whole exome sequencing data: state of the art and perspectives for clinical, population and epidemiological studies.

Pippucci T, Magi A, Gialluisi A, Romeo G.

Hum Hered. 2014;77(1-4):63-72. doi: 10.1159/000362412. Epub 2014 Jul 29.

39.

H3M2: detection of runs of homozygosity from whole-exome sequencing data.

Magi A, Tattini L, Palombo F, Benelli M, Gialluisi A, Giusti B, Abbate R, Seri M, Gensini GF, Romeo G, Pippucci T.

Bioinformatics. 2014 Oct 15;30(20):2852-9. doi: 10.1093/bioinformatics/btu401. Epub 2014 Jun 24.

PMID:
24966365
40.

Genome-wide copy number analysis in pediatric glioblastoma multiforme.

Giunti L, Pantaleo M, Sardi I, Provenzano A, Magi A, Cardellicchio S, Castiglione F, Tattini L, Novara F, Buccoliero AM, de Martino M, Genitori L, Zuffardi O, Giglio S.

Am J Cancer Res. 2014 May 26;4(3):293-303. eCollection 2014.

41.

Psychometric properties of the Cannabis Abuse Screening Test in Hungarian samples of adolescents and young adults.

Gyepesi A, Urbán R, Farkas J, Kraus L, Piontek D, Paksi B, Horváth G, Magi A, Eisinger A, Pilling J, Kökönyei G, Kun B, Demetrovics Z.

Eur Addict Res. 2014;20(3):119-28. doi: 10.1159/000353238. Epub 2013 Nov 6.

42.

EXCAVATOR: detecting copy number variants from whole-exome sequencing data.

Magi A, Tattini L, Cifola I, D'Aurizio R, Benelli M, Mangano E, Battaglia C, Bonora E, Kurg A, Seri M, Magini P, Giusti B, Romeo G, Pippucci T, De Bellis G, Abbate R, Gensini GF.

Genome Biol. 2013;14(10):R120.

43.

[The Hungarian version of the Problem Gambling Severity Index (PGSI-HU)].

Gyollai A, Urbán R, Farkas J, Kun B, Kökönyei G, Eisinger A, Magi A, Demetrovics Z.

Psychiatr Hung. 2013;28(3):274-80. Hungarian.

PMID:
24142293
44.

Desmoglein-2-integrin Beta-8 interaction regulates actin assembly in endothelial cells: deregulation in systemic sclerosis.

Giusti B, Margheri F, Rossi L, Lapini I, Magi A, Serratì S, Chillà A, Laurenzana A, Magnelli L, Calorini L, Bianchini F, Fibbi G, Abbate R, Del Rosso M.

PLoS One. 2013 Jul 11;8(7):e68117. doi: 10.1371/journal.pone.0068117. Print 2013. Erratum in: PLoS One. 2013;8(7). doi:10.1371/annotation/b41766f2-c23d-455e-8d6e-e4bce5ae1d80.

45.

A systematic analysis of bone marrow cells by flow cytometry defines a specific phenotypic profile beyond GPI deficiency in paroxysmal nocturnal hemoglobinuria.

Mannelli F, Bencini S, Peruzzi B, Cutini I, Sanna A, Benelli M, Magi A, Gianfaldoni G, Rotunno G, Carrai V, Gelli AM, Valle V, Santini V, Notaro R, Luzzatto L, Bosi A.

Cytometry B Clin Cytom. 2013 Mar;84(2):71-81. doi: 10.1002/cyto.b.21064. Epub 2012 Dec 26.

46.

Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.

Benelli M, Pescucci C, Marseglia G, Severgnini M, Torricelli F, Magi A.

Bioinformatics. 2012 Dec 15;28(24):3232-9. doi: 10.1093/bioinformatics/bts617. Epub 2012 Oct 23.

PMID:
23093608
47.

WNP: a novel algorithm for gene products annotation from weighted functional networks.

Magi A, Tattini L, Benelli M, Giusti B, Abbate R, Ruffo S.

PLoS One. 2012;7(6):e38767. doi: 10.1371/journal.pone.0038767. Epub 2012 Jun 28.

48.

Genetic polymorphisms of antioxidant enzymes as risk factors for oxidative stress-associated complications in preterm infants.

Giusti B, Vestrini A, Poggi C, Magi A, Pasquini E, Abbate R, Dani C.

Free Radic Res. 2012 Sep;46(9):1130-9. doi: 10.3109/10715762.2012.692787. Epub 2012 Jun 13.

PMID:
22574884
49.

372 kb microdeletion in 18q12.3 causing SETBP1 haploinsufficiency associated with mild mental retardation and expressive speech impairment.

Marseglia G, Scordo MR, Pescucci C, Nannetti G, Biagini E, Scandurra V, Gerundino F, Magi A, Benelli M, Torricelli F.

Eur J Med Genet. 2012 Mar;55(3):216-21. doi: 10.1016/j.ejmg.2012.01.005. Epub 2012 Jan 25.

PMID:
22333924
50.

Read count approach for DNA copy number variants detection.

Magi A, Tattini L, Pippucci T, Torricelli F, Benelli M.

Bioinformatics. 2012 Feb 15;28(4):470-8. doi: 10.1093/bioinformatics/btr707. Epub 2011 Dec 23.

PMID:
22199393

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