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Items: 1 to 50 of 56

1.

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis.

O'Doherty AM, Rue-Albrecht KC, Magee DA, Ahting S, Irwin RE, Hall TJ, Browne JA, Nalpas NC, Walsh CP, Gordon SV, Wojewodzic MW, MacHugh DE.

Sci Rep. 2019 Feb 6;9(1):1510. doi: 10.1038/s41598-018-37618-z.

2.

RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus).

Correia CN, McLoughlin KE, Nalpas NC, Magee DA, Browne JA, Rue-Albrecht K, Gordon SV, MacHugh DE.

Front Genet. 2018 Aug 14;9:278. doi: 10.3389/fgene.2018.00278. eCollection 2018.

3.

Intragenic sequences in the trophectoderm harbour the greatest proportion of methylation errors in day 17 bovine conceptuses generated using assisted reproductive technologies.

O'Doherty AM, McGettigan P, Irwin RE, Magee DA, Gagne D, Fournier E, Al-Naib A, Sirard MA, Walsh CP, Robert C, Fair T.

BMC Genomics. 2018 Jun 5;19(1):438. doi: 10.1186/s12864-018-4818-3.

4.

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli.

Malone KM, Rue-Albrecht K, Magee DA, Conlon K, Schubert OT, Nalpas NC, Browne JA, Smyth A, Gormley E, Aebersold R, MacHugh DE, Gordon SV.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000163. Epub 2018 Mar 20.

5.

Genomic Characterisation of the Indigenous Irish Kerry Cattle Breed.

Browett S, McHugo G, Richardson IW, Magee DA, Park SDE, Fahey AG, Kearney JF, Correia CN, Randhawa IAS, MacHugh DE.

Front Genet. 2018 Feb 19;9:51. doi: 10.3389/fgene.2018.00051. eCollection 2018.

6.

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle.

Upadhyay MR, Chen W, Lenstra JA, Goderie CRJ, MacHugh DE, Park SDE, Magee DA, Matassino D, Ciani F, Megens HJ, van Arendonk JAM, Groenen MAM; European Cattle Genetic Diversity Consortium; RPMA Crooijmans.

Heredity (Edinb). 2017 Dec;119(6):469. doi: 10.1038/hdy.2017.59. Epub 2017 Oct 11.

7.

Genome-Wide microRNA Binding Site Variation between Extinct Wild Aurochs and Modern Cattle Identifies Candidate microRNA-Regulated Domestication Genes.

Braud M, Magee DA, Park SD, Sonstegard TS, Waters SM, MacHugh DE, Spillane C.

Front Genet. 2017 Jan 31;8:3. doi: 10.3389/fgene.2017.00003. eCollection 2017.

8.

Genetic origin, admixture and population history of aurochs (Bos primigenius) and primitive European cattle.

Upadhyay MR, Chen W, Lenstra JA, Goderie CR, MacHugh DE, Park SD, Magee DA, Matassino D, Ciani F, Megens HJ, van Arendonk JA, Groenen MA; European Cattle Genetic Diversity Consortium; RPMA Crooijmans.

Heredity (Edinb). 2017 Feb;118(2):169-176. doi: 10.1038/hdy.2016.79. Epub 2016 Sep 28. Erratum in: Heredity (Edinb). 2017 Oct 11;:.

9.

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data.

Rue-Albrecht K, McGettigan PA, Hernández B, Nalpas NC, Magee DA, Parnell AC, Gordon SV, MacHugh DE.

BMC Bioinformatics. 2016 Mar 11;17:126. doi: 10.1186/s12859-016-0971-3.

10.

Iodine supplementation of the pregnant dam alters intestinal gene expression and immunoglobulin uptake in the newborn lamb.

McGovern FM, Magee DA, Browne JA, MacHugh DE, Boland TM.

Animal. 2016 Apr;10(4):598-606. doi: 10.1017/S1751731115002505. Epub 2015 Nov 20.

PMID:
26585074
11.

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle.

Park SD, Magee DA, McGettigan PA, Teasdale MD, Edwards CJ, Lohan AJ, Murphy A, Braud M, Donoghue MT, Liu Y, Chamberlain AT, Rue-Albrecht K, Schroeder S, Spillane C, Tai S, Bradley DG, Sonstegard TS, Loftus BJ, MacHugh DE.

Genome Biol. 2015 Oct 26;16:234. doi: 10.1186/s13059-015-0790-2.

12.

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli.

Nalpas NC, Magee DA, Conlon KM, Browne JA, Healy C, McLoughlin KE, Rue-Albrecht K, McGettigan PA, Killick KE, Gormley E, Gordon SV, MacHugh DE.

Sci Rep. 2015 Sep 8;5:13629. doi: 10.1038/srep13629.

13.

Genomic imprinting effects on complex traits in domesticated animal species.

O'Doherty AM, MacHugh DE, Spillane C, Magee DA.

Front Genet. 2015 Apr 24;6:156. doi: 10.3389/fgene.2015.00156. eCollection 2015. Review.

14.

DNA methylation dynamics at imprinted genes during bovine pre-implantation embryo development.

O'Doherty AM, Magee DA, O'Shea LC, Forde N, Beltman ME, Mamo S, Fair T.

BMC Dev Biol. 2015 Mar 10;15:13. doi: 10.1186/s12861-015-0060-2.

15.

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq.

Casey ME, Meade KG, Nalpas NC, Taraktsoglou M, Browne JA, Killick KE, Park SD, Gormley E, Hokamp K, Magee DA, MacHugh DE.

Front Immunol. 2015 Feb 4;6:23. doi: 10.3389/fimmu.2015.00023. eCollection 2015.

16.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Tuberculosis (Edinb). 2015 Jan;95(1):60-7.

17.

Comparative functional genomics and the bovine macrophage response to strains of the mycobacterium genus.

Rue-Albrecht K, Magee DA, Killick KE, Nalpas NC, Gordon SV, MacHugh DE.

Front Immunol. 2014 Nov 5;5:536. doi: 10.3389/fimmu.2014.00536. eCollection 2014. Review.

18.

Definition of the cattle killer cell Ig-like receptor gene family: comparison with aurochs and human counterparts.

Sanderson ND, Norman PJ, Guethlein LA, Ellis SA, Williams C, Breen M, Park SD, Magee DA, Babrzadeh F, Warry A, Watson M, Bradley DG, MacHugh DE, Parham P, Hammond JA.

J Immunol. 2014 Dec 15;193(12):6016-30. doi: 10.4049/jimmunol.1401980. Epub 2014 Nov 14.

19.

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis.

Killick KE, Magee DA, Park SD, Taraktsoglou M, Browne JA, Conlon KM, Nalpas NC, Gormley E, Gordon SV, MacHugh DE, Hokamp K.

Front Immunol. 2014 Oct 1;5:422. doi: 10.3389/fimmu.2014.00422. eCollection 2014.

20.

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis.

McLoughlin KE, Nalpas NC, Rue-Albrecht K, Browne JA, Magee DA, Killick KE, Park SD, Hokamp K, Meade KG, O'Farrelly C, Gormley E, Gordon SV, MacHugh DE.

Front Immunol. 2014 Aug 26;5:396. doi: 10.3389/fimmu.2014.00396. eCollection 2014.

21.

Imprinted loci in domestic livestock species as epigenomic targets for artificial selection of complex traits.

Magee DA, Spillane C, Berkowicz EW, Sikora KM, MacHugh DE.

Anim Genet. 2014 Aug;45 Suppl 1:25-39. doi: 10.1111/age.12168. Epub 2014 Jul 2. Review.

PMID:
24990393
22.

Innate cytokine profiling of bovine alveolar macrophages reveals commonalities and divergence in the response to Mycobacterium bovis and Mycobacterium tuberculosis infection.

Magee DA, Conlon KM, Nalpas NC, Browne JA, Pirson C, Healy C, McLoughlin KE, Chen J, Vordermeier HM, Gormley E, MacHugh DE, Gordon SV.

Tuberculosis (Edinb). 2014 Jul;94(4):441-50. doi: 10.1016/j.tube.2014.04.004. Epub 2014 May 5.

PMID:
24882682
23.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.

PMID:
24021155
24.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Nalpas NC, Park SD, Magee DA, Taraktsoglou M, Browne JA, Conlon KM, Rue-Albrecht K, Killick KE, Hokamp K, Lohan AJ, Loftus BJ, Gormley E, Gordon SV, MacHugh DE.

BMC Genomics. 2013 Apr 8;14:230. doi: 10.1186/1471-2164-14-230.

25.

Expression of key genes of the somatotropic axis in longissimus dorsi muscle of beef heifers phenotypically divergent for residual feed intake.

Kelly AK, Waters SM, McGee M, Browne JA, Magee DA, Kenny DA.

J Anim Sci. 2013 Jan;91(1):159-67. doi: 10.2527/jas.2012-5557. Epub 2012 Oct 9.

PMID:
23048153
26.

PHLDA2 is an imprinted gene in cattle.

Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A, Waters SM, MacHugh DE, Spillane C.

Anim Genet. 2012 Oct;43(5):587-90. doi: 10.1111/j.1365-2052.2011.02292.x. Epub 2011 Dec 2.

PMID:
22497461
27.

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis.

Machugh DE, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, DE Park S, Hokamp K, Gormley E, Magee DA.

Vet Res. 2012 Mar 28;43:25. doi: 10.1186/1297-9716-43-25.

28.

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM, Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE.

PLoS One. 2012;7(2):e32034. doi: 10.1371/journal.pone.0032034. Epub 2012 Feb 22.

29.

Single Nucleotide Polymorphisms in the Insulin-Like Growth Factor 1 (IGF-1) Gene are Associated with Performance in Holstein-Friesian Dairy Cattle.

Mullen MP, Berry DP, Howard DJ, Diskin MG, Lynch CO, Giblin L, Kenny DA, Magee DA, Meade KG, Waters SM.

Front Genet. 2011 Feb 16;2:3. doi: 10.3389/fgene.2011.00003. eCollection 2011.

30.

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples.

Mullen MP, Creevey CJ, Berry DP, McCabe MS, Magee DA, Howard DJ, Killeen AP, Park SD, McGettigan PA, Lucy MC, Machugh DE, Waters SM.

BMC Genomics. 2012 Jan 11;13:16. doi: 10.1186/1471-2164-13-16.

31.

Single nucleotide polymorphisms in the imprinted bovine insulin-like growth factor 2 receptor gene (IGF2R) are associated with body size traits in Irish Holstein-Friesian cattle.

Berkowicz EW, Magee DA, Berry DP, Sikora KM, Howard DJ, Mullen MP, Evans RD, Spillane C, MacHugh DE.

Anim Genet. 2012 Feb;43(1):81-7. doi: 10.1111/j.1365-2052.2011.02211.x. Epub 2011 May 23.

PMID:
22221028
32.

Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes.

Killick KE, Browne JA, Park SD, Magee DA, Martin I, Meade KG, Gordon SV, Gormley E, O'Farrelly C, Hokamp K, MacHugh DE.

BMC Genomics. 2011 Dec 19;12:611. doi: 10.1186/1471-2164-12-611.

33.

Transcriptional profiling of immune genes in bovine monocyte-derived macrophages exposed to bacterial antigens.

Taraktsoglou M, Szalabska U, Magee DA, Browne JA, Sweeney T, Gormley E, MacHugh DE.

Vet Immunol Immunopathol. 2011 Mar 15;140(1-2):130-9. doi: 10.1016/j.vetimm.2010.12.002. Epub 2010 Dec 10.

PMID:
21242003
34.

DNA sequence polymorphisms within the bovine guanine nucleotide-binding protein Gs subunit alpha (Gsα)-encoding (GNAS) genomic imprinting domain are associated with performance traits.

Sikora KM, Magee DA, Berkowicz EW, Berry DP, Howard DJ, Mullen MP, Evans RD, Machugh DE, Spillane C.

BMC Genet. 2011 Jan 7;12:4. doi: 10.1186/1471-2156-12-4.

35.

A catalogue of validated single nucleotide polymorphisms in bovine orthologs of mammalian imprinted genes and associations with beef production traits.

Magee DA, Berkowicz EW, Sikora KM, Berry DP, Park SD, Kelly AK, Sweeney T, Kenny DA, Evans RD, Wickham BW, Spillane C, Machugh DE.

Animal. 2010 Dec;4(12):1958-70. doi: 10.1017/S1751731110001163.

PMID:
22445369
36.

Associations between novel single nucleotide polymorphisms in the Bos taurus growth hormone gene and performance traits in Holstein-Friesian dairy cattle.

Mullen MP, Berry DP, Howard DJ, Diskin MG, Lynch CO, Berkowicz EW, Magee DA, MacHugh DE, Waters SM.

J Dairy Sci. 2010 Dec;93(12):5959-69. doi: 10.3168/jds.2010-3385. Erratum in: J Dairy Sci. 2011 Feb;94(2):1069.

37.

Polymorphisms in bovine immune genes and their associations with somatic cell count and milk production in dairy cattle.

Beecher C, Daly M, Childs S, Berry DP, Magee DA, McCarthy TV, Giblin L.

BMC Genet. 2010 Nov 5;11:99. doi: 10.1186/1471-2156-11-99.

38.

High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies.

Magee DA, Berkowicz EW, Sikora KM, Sweeney T, Kenny DA, Kelly AK, Evans RD, Wickham BW, Bradley DG, Spillane C, MacHugh DE.

Anim Biotechnol. 2010 Oct;21(4):257-62. doi: 10.1080/10495398.2010.509680.

PMID:
20967645
39.

DNA sequence polymorphisms in a panel of eight candidate bovine imprinted genes and their association with performance traits in Irish Holstein-Friesian cattle.

Magee DA, Sikora KM, Berkowicz EW, Berry DP, Howard DJ, Mullen MP, Evans RD, Spillane C, MacHugh DE.

BMC Genet. 2010 Oct 13;11:93. doi: 10.1186/1471-2156-11-93.

40.

Single nucleotide polymorphisms at the imprinted bovine insulin-like growth factor 2 (IGF2) locus are associated with dairy performance in Irish Holstein-Friesian cattle.

Berkowicz EW, Magee DA, Sikora KM, Berry DP, Howard DJ, Mullen MP, Evans RD, Spillane C, MacHugh DE.

J Dairy Res. 2011 Feb;78(1):1-8. doi: 10.1017/S0022029910000567. Epub 2010 Sep 8.

PMID:
20822563
41.

Single nucleotide polymorphisms within the bovine DLK1-DIO3 imprinted domain are associated with economically important production traits in cattle.

Magee DA, Berry DP, Berkowicz EW, Sikora KM, Howard DJ, Mullen MP, Evans RD, Spillane C, MacHugh DE.

J Hered. 2011 Jan-Feb;102(1):94-101. doi: 10.1093/jhered/esq097. Epub 2010 Sep 3.

PMID:
20817761
42.

Technical note: High fidelity of whole-genome amplified sheep (Ovis aries) deoxyribonucleic acid using a high-density single nucleotide polymorphism array-based genotyping platform.

Magee DA, Park SD, Scraggs E, Murphy AM, Doherty ML, Kijas JW; International Sheep Genomics Consortium, MacHugh DE.

J Anim Sci. 2010 Oct;88(10):3183-6. doi: 10.2527/jas.2009-2723. Epub 2010 Jun 18.

PMID:
20562352
43.

Associations between newly discovered polymorphisms in the Bos taurus growth hormone receptor gene and performance traits in Holstein-Friesian dairy cattle.

Waters SM, McCabe MS, Howard DJ, Giblin L, Magee DA, MacHugh DE, Berry DP.

Anim Genet. 2011 Feb;42(1):39-49. doi: 10.1111/j.1365-2052.2010.02087.x.

PMID:
20528848
44.

A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius).

Edwards CJ, Magee DA, Park SD, McGettigan PA, Lohan AJ, Murphy A, Finlay EK, Shapiro B, Chamberlain AT, Richards MB, Bradley DG, Loftus BJ, MacHugh DE.

PLoS One. 2010 Feb 17;5(2):e9255. doi: 10.1371/journal.pone.0009255.

45.

Zebu cattle are an exclusive legacy of the South Asia neolithic.

Chen S, Lin BZ, Baig M, Mitra B, Lopes RJ, Santos AM, Magee DA, Azevedo M, Tarroso P, Sasazaki S, Ostrowski S, Mahgoub O, Chaudhuri TK, Zhang YP, Costa V, Royo LJ, Goyache F, Luikart G, Boivin N, Fuller DQ, Mannen H, Bradley DG, Beja-Pereira A.

Mol Biol Evol. 2010 Jan;27(1):1-6. doi: 10.1093/molbev/msp213.

PMID:
19770222
46.

A partial african ancestry for the creole cattle populations of the Caribbean.

Magee DA, Meghen C, Harrison S, Troy CS, Cymbron T, Gaillard C, Morrow A, Maillard JC, Bradley DG.

J Hered. 2002 Nov-Dec;93(6):429-32.

PMID:
12642643
47.

Genetic evidence for Near-Eastern origins of European cattle.

Troy CS, MacHugh DE, Bailey JF, Magee DA, Loftus RT, Cunningham P, Chamberlain AT, Sykes BC, Bradley DG.

Nature. 2001 Apr 26;410(6832):1088-91.

PMID:
11323670
48.

Stem cell transplantation for metastatic breast cancer: analysis of tumor contamination.

Stadtmauer EA, Tsai DE, Sickles CJ, Mick R, Luger SM, Porter DL, Mangan PA, Schuchter LM, Schuster SJ, Loh EY, Magee DA, Sachs RA, Wall ME, Moore J, Buzby GP, Zaleta E, Kamoun M, Silberstein LE.

Med Oncol. 1999 Dec;16(4):279-88.

PMID:
10618691
49.

An autologous fibrinogen-based adhesive for use in otologic surgery.

Silberstein LE, Williams LJ, Hughlett MA, Magee DA, Weisman RA.

Transfusion. 1988 Jul-Aug;28(4):319-21.

PMID:
3388476
50.

Effect of stretch exercises on suxamethonium induced fasciculations and myalgia.

Magee DA, Robinson RJ.

Br J Anaesth. 1987 May;59(5):596-601.

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