Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 42

1.

Interspecific hybridization facilitates niche adaptation in beer yeast.

Gallone B, Steensels J, Mertens S, Dzialo MC, Gordon JL, Wauters R, Theßeling FA, Bellinazzo F, Saels V, Herrera-Malaver B, Prahl T, White C, Hutzler M, Meußdoerffer F, Malcorps P, Souffriau B, Daenen L, Baele G, Maere S, Verstrepen KJ.

Nat Ecol Evol. 2019 Nov;3(11):1562-1575. doi: 10.1038/s41559-019-0997-9. Epub 2019 Oct 21.

PMID:
31636425
2.

Endoreplication as a potential driver of cell wall modifications.

Bhosale R, Maere S, De Veylder L.

Curr Opin Plant Biol. 2019 Oct;51:58-65. doi: 10.1016/j.pbi.2019.04.003. Epub 2019 May 6. Review.

PMID:
31071565
3.

A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation.

Bhosale R, Boudolf V, Cuevas F, Lu R, Eekhout T, Hu Z, Van Isterdael G, Lambert GM, Xu F, Nowack MK, Smith RS, Vercauteren I, De Rycke R, Storme V, Beeckman T, Larkin JC, Kremer A, Höfte H, Galbraith DW, Kumpf RP, Maere S, De Veylder L.

Plant Cell. 2018 Oct;30(10):2330-2351. doi: 10.1105/tpc.17.00983. Epub 2018 Aug 16.

4.

Fern genomes elucidate land plant evolution and cyanobacterial symbioses.

Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM.

Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2.

5.

The Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target.

Cova M, López-Gutiérrez B, Artigas-Jerónimo S, González-Díaz A, Bandini G, Maere S, Carretero-Paulet L, Izquierdo L.

Sci Rep. 2018 Mar 5;8(1):4005. doi: 10.1038/s41598-018-22441-3.

6.

Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity.

Tasdighian S, Van Bel M, Li Z, Van de Peer Y, Carretero-Paulet L, Maere S.

Plant Cell. 2017 Nov;29(11):2766-2785. doi: 10.1105/tpc.17.00313. Epub 2017 Oct 23.

7.

Origins, evolution, domestication and diversity of Saccharomyces beer yeasts.

Gallone B, Mertens S, Gordon JL, Maere S, Verstrepen KJ, Steensels J.

Curr Opin Biotechnol. 2018 Feb;49:148-155. doi: 10.1016/j.copbio.2017.08.005. Epub 2017 Sep 3. Review.

8.

The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels.

Nelissen H, Sun XH, Rymen B, Jikumaru Y, Kojima M, Takebayashi Y, Abbeloos R, Demuynck K, Storme V, Vuylsteke M, De Block J, Herman D, Coppens F, Maere S, Kamiya Y, Sakakibara H, Beemster GTS, Inzé D.

Plant Biotechnol J. 2018 Feb;16(2):615-627. doi: 10.1111/pbi.12801. Epub 2017 Sep 4.

9.

Evolutionary Context Improves Regulatory Network Predictions.

Gordon JL, Gallone B, Maere S, Verstrepen KJ.

Cell Syst. 2017 May 24;4(5):478-479. doi: 10.1016/j.cels.2017.05.004.

10.

The Origin of Floral Organ Identity Quartets.

Ruelens P, Zhang Z, van Mourik H, Maere S, Kaufmann K, Geuten K.

Plant Cell. 2017 Feb;29(2):229-242. doi: 10.1105/tpc.16.00366. Epub 2017 Jan 18.

11.

Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture.

Clauw P, Coppens F, Korte A, Herman D, Slabbinck B, Dhondt S, Van Daele T, De Milde L, Vermeersch M, Maleux K, Maere S, Gonzalez N, Inzé D.

Plant Cell. 2016 Oct;28(10):2417-2434. Epub 2016 Oct 11.

12.

Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts.

Gallone B, Steensels J, Prahl T, Soriaga L, Saels V, Herrera-Malaver B, Merlevede A, Roncoroni M, Voordeckers K, Miraglia L, Teiling C, Steffy B, Taylor M, Schwartz A, Richardson T, White C, Baele G, Maere S, Verstrepen KJ.

Cell. 2016 Sep 8;166(6):1397-1410.e16. doi: 10.1016/j.cell.2016.08.020.

13.

Combined Large-Scale Phenotyping and Transcriptomics in Maize Reveals a Robust Growth Regulatory Network.

Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D.

Plant Physiol. 2016 Mar;170(3):1848-67. doi: 10.1104/pp.15.01883. Epub 2016 Jan 11.

14.

Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.

Li Z, Defoort J, Tasdighian S, Maere S, Van de Peer Y, De Smet R.

Plant Cell. 2016 Feb;28(2):326-44. doi: 10.1105/tpc.15.00877. Epub 2016 Jan 7.

15.

A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development.

Chen Q, Liu Y, Maere S, Lee E, Van Isterdael G, Xie Z, Xuan W, Lucas J, Vassileva V, Kitakura S, Marhavý P, Wabnik K, Geldner N, Benková E, Le J, Fukaki H, Grotewold E, Li C, Friml J, Sack F, Beeckman T, Vanneste S.

Nat Commun. 2015 Nov 18;6:8821. doi: 10.1038/ncomms9821.

16.

A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.

Olvera-Carrillo Y, Van Bel M, Van Hautegem T, Fendrych M, Huysmans M, Simaskova M, van Durme M, Buscaill P, Rivas S, Coll NS, Coppens F, Maere S, Nowack MK.

Plant Physiol. 2015 Dec;169(4):2684-99. doi: 10.1104/pp.15.00769. Epub 2015 Oct 5.

17.

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population.

Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D.

Genome Biol. 2015 Sep 11;16:168. doi: 10.1186/s13059-015-0735-9.

18.

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution.

Vanneste K, Maere S, Van de Peer Y.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130353. doi: 10.1098/rstb.2013.0353. Review.

19.

Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary.

Vanneste K, Baele G, Maere S, Van de Peer Y.

Genome Res. 2014 Aug;24(8):1334-47. doi: 10.1101/gr.168997.113. Epub 2014 May 16.

20.

Modeling the evolution of molecular systems from a mechanistic perspective.

Gutiérrez J, Maere S.

Trends Plant Sci. 2014 May;19(5):292-303. doi: 10.1016/j.tplants.2014.03.004. Epub 2014 Apr 5. Review.

PMID:
24709144
21.

Interview with Steven Maere.

Maere S.

Trends Plant Sci. 2014 May;19(5):276-7. doi: 10.1016/j.tplants.2014.03.005. Epub 2014 Apr 4. No abstract available.

PMID:
24709143
22.

The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants.

Gadeyne A, Sánchez-Rodríguez C, Vanneste S, Di Rubbo S, Zauber H, Vanneste K, Van Leene J, De Winne N, Eeckhout D, Persiau G, Van De Slijke E, Cannoot B, Vercruysse L, Mayers JR, Adamowski M, Kania U, Ehrlich M, Schweighofer A, Ketelaar T, Maere S, Bednarek SY, Friml J, Gevaert K, Witters E, Russinova E, Persson S, De Jaeger G, Van Damme D.

Cell. 2014 Feb 13;156(4):691-704. doi: 10.1016/j.cell.2014.01.039.

23.

Predicting gene function from uncontrolled expression variation among individual wild-type Arabidopsis plants.

Bhosale R, Jewell JB, Hollunder J, Koo AJ, Vuylsteke M, Michoel T, Hilson P, Goossens A, Howe GA, Browse J, Maere S.

Plant Cell. 2013 Aug;25(8):2865-77. doi: 10.1105/tpc.113.112268. Epub 2013 Aug 13.

24.

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.

De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y.

Proc Natl Acad Sci U S A. 2013 Feb 19;110(8):2898-903. doi: 10.1073/pnas.1300127110. Epub 2013 Feb 4.

25.

Reconstruction of ancestral metabolic enzymes reveals molecular mechanisms underlying evolutionary innovation through gene duplication.

Voordeckers K, Brown CA, Vanneste K, van der Zande E, Voet A, Maere S, Verstrepen KJ.

PLoS Biol. 2012;10(12):e1001446. doi: 10.1371/journal.pbio.1001446. Epub 2012 Dec 11.

26.

Inference of genome duplications from age distributions revisited.

Vanneste K, Van de Peer Y, Maere S.

Mol Biol Evol. 2013 Jan;30(1):177-90. doi: 10.1093/molbev/mss214. Epub 2012 Aug 30.

PMID:
22936721
27.

Expansive evolution of the trehalose-6-phosphate phosphatase gene family in Arabidopsis.

Vandesteene L, López-Galvis L, Vanneste K, Feil R, Maere S, Lammens W, Rolland F, Lunn JE, Avonce N, Beeckman T, Van Dijck P.

Plant Physiol. 2012 Oct;160(2):884-96. doi: 10.1104/pp.112.201400. Epub 2012 Aug 1.

28.

Gamma paleohexaploidy in the stem lineage of core eudicots: significance for MADS-box gene and species diversification.

Vekemans D, Proost S, Vanneste K, Coenen H, Viaene T, Ruelens P, Maere S, Van de Peer Y, Geuten K.

Mol Biol Evol. 2012 Dec;29(12):3793-806. doi: 10.1093/molbev/mss183. Epub 2012 Jul 20.

PMID:
22821009
29.

PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

Smoot M, Ono K, Ideker T, Maere S.

Bioinformatics. 2011 Apr 1;27(7):1030-1. doi: 10.1093/bioinformatics/btr045. Epub 2011 Jan 28.

30.

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana.

Van Leene J, Hollunder J, Eeckhout D, Persiau G, Van De Slijke E, Stals H, Van Isterdael G, Verkest A, Neirynck S, Buffel Y, De Bodt S, Maere S, Laukens K, Pharazyn A, Ferreira PC, Eloy N, Renne C, Meyer C, Faure JD, Steinbrenner J, Beynon J, Larkin JC, Van de Peer Y, Hilson P, Kuiper M, De Veylder L, Van Onckelen H, Inzé D, Witters E, De Jaeger G.

Mol Syst Biol. 2010 Aug 10;6:397. doi: 10.1038/msb.2010.53.

31.

2R or not 2R is not the question anymore.

Van de Peer Y, Maere S, Meyer A.

Nat Rev Genet. 2010 Feb;11(2):166. doi: 10.1038/nrg2600-c2. Epub 2010 Jan 6. No abstract available.

PMID:
20051987
32.

The evolutionary significance of ancient genome duplications.

Van de Peer Y, Maere S, Meyer A.

Nat Rev Genet. 2009 Oct;10(10):725-32. doi: 10.1038/nrg2600. Epub 2009 Aug 4. Review.

PMID:
19652647
33.

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event.

Fawcett JA, Maere S, Van de Peer Y.

Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5737-42. doi: 10.1073/pnas.0900906106. Epub 2009 Mar 26.

34.

Extracting expression modules from perturbational gene expression compendia.

Maere S, Van Dijck P, Kuiper M.

BMC Syst Biol. 2008 Apr 10;2:33. doi: 10.1186/1752-0509-2-33.

35.

Integration of biological networks and gene expression data using Cytoscape.

Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, Ideker T, Bader GD.

Nat Protoc. 2007;2(10):2366-82.

36.

Validating module network learning algorithms using simulated data.

Michoel T, Maere S, Bonnet E, Joshi A, Saeys Y, Van den Bulcke T, Van Leemput K, van Remortel P, Kuiper M, Marchal K, Van de Peer Y.

BMC Bioinformatics. 2007 May 3;8 Suppl 2:S5.

37.

The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.

Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inzé D, Van Lijsebettens M.

Plant Cell. 2007 Feb;19(2):417-32. Epub 2007 Feb 28.

38.

The gain and loss of genes during 600 million years of vertebrate evolution.

Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, Van de Peer Y.

Genome Biol. 2006;7(5):R43. Epub 2006 May 24.

39.

Genome duplication and the origin of angiosperms.

De Bodt S, Maere S, Van de Peer Y.

Trends Ecol Evol. 2005 Nov;20(11):591-7. Epub 2005 Aug 9.

PMID:
16701441
40.

Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana.

Casneuf T, De Bodt S, Raes J, Maere S, Van de Peer Y.

Genome Biol. 2006;7(2):R13. Epub 2006 Feb 20.

41.

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks.

Maere S, Heymans K, Kuiper M.

Bioinformatics. 2005 Aug 15;21(16):3448-9. Epub 2005 Jun 21.

PMID:
15972284
42.

Modeling gene and genome duplications in eukaryotes.

Maere S, De Bodt S, Raes J, Casneuf T, Van Montagu M, Kuiper M, Van de Peer Y.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5454-9. Epub 2005 Mar 30.

Supplemental Content

Support Center