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Enzymatic Bioweathering and Metal Mobilization From Black Slate by the Basidiomycete Schizophyllum commune.

Kirtzel J, Madhavan S, Wielsch N, Blinne A, Hupfer Y, Linde J, Krause K, Svatoš A, Kothe E.

Front Microbiol. 2018 Oct 24;9:2545. doi: 10.3389/fmicb.2018.02545. eCollection 2018.


Non-invasive brain stimulation in the modulation of cerebral blood flow after stroke: A systematic review of Transcranial Doppler studies.

Iyer PC, Madhavan S.

Clin Neurophysiol. 2018 Dec;129(12):2544-2551. doi: 10.1016/j.clinph.2018.09.019. Epub 2018 Oct 25.


A Low-Cost Stove Use Monitor to Enable Conditional Cash Transfers.

Pillarisetti A, Gill M, Allen T, Madhavan S, Dhongade A, Ghorpade M, Roy S, Balakrishnan K, Juvekar S, Smith KR.

Ecohealth. 2018 Dec;15(4):768-776. doi: 10.1007/s10393-018-1379-5. Epub 2018 Oct 12.


Adapting crowdsourced clinical cancer curation in CIViC to the ClinGen minimum variant level data community-driven standards.

Danos AM, Ritter DI, Wagner AH, Krysiak K, Sonkin D, Micheel C, McCoy M, Rao S, Raca G, Boca SM, Roy A, Barnell EK, McMichael JF, Kiwala S, Coffman AC, Kujan L, Kulkarni S, Griffith M, Madhavan S, Griffith OL; Clinical Genome Resource Somatic Working Group and Clinical Interpretation of Variants in Cancer team members.

Hum Mutat. 2018 Nov;39(11):1721-1732. doi: 10.1002/humu.23651.


Effectiveness of Mentha piperita Leaf Extracts against Oral Pathogens: An in vitro Study.

Raghavan R, Devi MPS, Varghese M, Joseph A, Madhavan SS, Sreedevi PV.

J Contemp Dent Pract. 2018 Sep 1;19(9):1042-1046.


Kin support and child health: Investigating two approaches in an African slum.

Clark S, Madhavan S, Kabiru C.

Soc Sci Res. 2018 Nov;76:105-119. doi: 10.1016/j.ssresearch.2018.08.001. Epub 2018 Aug 2.


Art and Challenges of Precision Medicine: Interpreting and Integrating Genomic Data Into Clinical Practice.

Madhavan S, Subramaniam S, Brown TD, Chen JL.

Am Soc Clin Oncol Educ Book. 2018 May 23;(38):546-553. doi: 10.1200/EDBK_200759. Review.


Impact of Licensed Federal Firearm Suppliers on Firearm-Related Mortality.

Chao SD, Kastenberg ZJ, Madhavan S, Staudenmayer KL.

J Trauma Acute Care Surg. 2018 Sep 13. doi: 10.1097/TA.0000000000002067. [Epub ahead of print]


Cystic mediastinal mass.

Narayanapillai J, Madhavan S, Shankaragouda BH.

Heart Asia. 2018 Jul 23;10(2):e011071. doi: 10.1136/heartasia-2018-011071. eCollection 2018.


The REMBRANDT study, a large collection of genomic data from brain cancer patients.

Gusev Y, Bhuvaneshwar K, Song L, Zenklusen JC, Fine H, Madhavan S.

Sci Data. 2018 Aug 14;5:180158. doi: 10.1038/sdata.2018.158.


Absence of a Transcranial Magnetic Stimulation-Induced Lower Limb Corticomotor Response Does Not Affect Walking Speed in Chronic Stroke Survivors.

Sivaramakrishnan A, Madhavan S.

Stroke. 2018 Aug;49(8):2004-2007. doi: 10.1161/STROKEAHA.118.021718.


Molecular Profiling of Patients with Pancreatic Cancer: Initial Results from the Know Your Tumor Initiative.

Pishvaian MJ, Bender RJ, Halverson D, Rahib L, Hendifar AE, Mikhail S, Chung V, Picozzi VJ, Sohal D, Blais EM, Mason K, Lyons EE, Matrisian LM, Brody JR, Madhavan S, Petricoin EF 3rd.

Clin Cancer Res. 2018 Oct 15;24(20):5018-5027. doi: 10.1158/1078-0432.CCR-18-0531. Epub 2018 Jun 28.


viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors.

Bhuvaneshwar K, Song L, Madhavan S, Gusev Y.

Front Microbiol. 2018 Jun 5;9:1172. doi: 10.3389/fmicb.2018.01172. eCollection 2018.


Jejunojejunal intussusception: an unusual case of postoperative intestinal obstruction.

Madhavan S, Augustine A.

Ann R Coll Surg Engl. 2018 Sep;100(7):e165-e167. doi: 10.1308/rcsann.2018.0079. Epub 2018 Jun 18.


Phosphorylation of the α-chain in the integrin LFA-1 enables β2-chain phosphorylation and α-actinin binding required for cell adhesion.

Jahan F, Madhavan S, Rolova T, Viazmina L, Grönholm M, Gahmberg CG.

J Biol Chem. 2018 Aug 10;293(32):12318-12330. doi: 10.1074/jbc.RA118.004318. Epub 2018 Jun 14.


Receipt of Guideline-Concordant Care Among Older Women With Stage I-III Breast Cancer: A Population-Based Study.

LeMasters T, Madhavan SS, Sambamoorthi U, Hazard-Jenkins HW, Kelly KM, Long D.

J Natl Compr Canc Netw. 2018 Jun;16(6):703-710. doi: 10.6004/jnccn.2018.7004.


A Computational Approach for Prioritizing Selection of Therapies Targeting Drug Resistant Variation in Anaplastic Lymphoma Kinase.

McCoy MD, Madhavan S.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:160-167. eCollection 2018.


Standardizing And Democratizing Access To Cancer Molecular Diagnostic Test Data From Patients To Drive Translational Research.

Madhavan S, Ritter D, Micheel C, Rao S, Roy A, Sonkin D, Mccoy M, Griffith M, Griffith OL, Mcgarvey P, Kulkarni S.

AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:152-159. eCollection 2018.


Intelligent Word Embeddings of Free-Text Radiology Reports.

Banerjee I, Madhavan S, Goldman RE, Rubin DL.

AMIA Annu Symp Proc. 2018 Apr 16;2017:411-420. eCollection 2017.


The effect of inlet and outlet boundary conditions in image-based CFD modeling of aortic flow.

Madhavan S, Kemmerling EMC.

Biomed Eng Online. 2018 May 30;17(1):66. doi: 10.1186/s12938-018-0497-1.


Curation of the Pancreatic Ductal Adenocarcinoma Subset of the Cancer Genome Atlas Is Essential for Accurate Conclusions about Survival-Related Molecular Mechanisms.

Peran I, Madhavan S, Byers SW, McCoy MD.

Clin Cancer Res. 2018 Aug 15;24(16):3813-3819. doi: 10.1158/1078-0432.CCR-18-0290. Epub 2018 May 8.


Measuring extended families over time in informal settlements in Nairobi, Kenya: Retention and data consistency in a two-round survey.

Madhavan S, Beguy D, Clark S, Kabiru C.

Demogr Res. 2018 Jan-Jun;38:1339-1358. doi: 10.4054/DemRes.2018.38.44. Epub 2018 Apr 17.


Super enhancer inhibitors suppress MYC driven transcriptional amplification and tumor progression in osteosarcoma.

Chen D, Zhao Z, Huang Z, Chen DC, Zhu XX, Wang YZ, Yan YW, Tang S, Madhavan S, Ni W, Huang ZP, Li W, Ji W, Shen H, Lin S, Jiang YZ.

Bone Res. 2018 Apr 4;6:11. doi: 10.1038/s41413-018-0009-8. eCollection 2018.


Acquired Resistance to a MET Antibody In Vivo Can Be Overcome by the MET Antibody Mixture Sym015.

Pollmann SE, Calvert VS, Rao S, Boca SM, Madhavan S, Horak ID, Kjaer A, Petricoin EF, Kragh M, Poulsen TT.

Mol Cancer Ther. 2018 Jun;17(6):1259-1270. doi: 10.1158/1535-7163.MCT-17-0787. Epub 2018 Mar 15.


Who Helps Single Mothers in Nairobi? The Role of Kin Support.

Clark S, Madhavan S, Cotton C, Beguy D, Kabiru C.

J Marriage Fam. 2017 Aug;79(4):1186-1204. doi: 10.1111/jomf.12404. Epub 2017 Apr 28.


Predicting morbidity of liver resection.

Madhavan S, Shelat VG, Soong SL, Woon WWL, Huey T, Chan YH, Junnarkar SP.

Langenbecks Arch Surg. 2018 May;403(3):359-369. doi: 10.1007/s00423-018-1656-3. Epub 2018 Feb 7.


CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data.

Song L, Bhuvaneshwar K, Wang Y, Feng Y, Shih IM, Madhavan S, Gusev Y.

Cancer Inform. 2017 Dec 13;16:1176935117746637. doi: 10.1177/1176935117746637. eCollection 2017.


Summary findings from a mixed methods study on identifying and responding to maternal and newborn illness in seven countries: implications for programs.

Charlet D, Moran AC, Madhavan S.

J Health Popul Nutr. 2017 Dec 21;36(Suppl 1):48. doi: 10.1186/s41043-017-0126-9.


Methodology for a mixed-methods multi-country study to assess recognition of and response to maternal and newborn illness.

Moran AC, Charlet D, Madhavan S, Aruldas K, Donaldson M, Manzi F, Okuga M, Rosales A, Sharma V, Celone M, Brandes N, Sherry JM.

J Health Popul Nutr. 2017 Dec 21;36(Suppl 1):51. doi: 10.1186/s41043-017-0119-8.


POPSTR: Inference of Admixed Population Structure Based on Single-Nucleotide Polymorphisms and Copy Number Variations.

Ahn J, Conkright B, Boca SM, Madhavan S.

J Comput Biol. 2018 Apr;25(4):417-429. doi: 10.1089/cmb.2017.0127. Epub 2018 Jan 2.


Household structure vs. composition: Understanding gendered effects on educational progress in rural South Africa.

Madhavan S, Myroniuk TW, Kuhn R, Collinson MA.

Demogr Res. 2017 Jul-Dec;37:1891-1916. doi: 10.4054/DemRes.2017.37.59. Epub 2017 Dec 13.


eGARD: Extracting associations between genomic anomalies and drug responses from text.

Mahmood ASMA, Rao S, McGarvey P, Wu C, Madhavan S, Vijay-Shanker K.

PLoS One. 2017 Dec 20;12(12):e0189663. doi: 10.1371/journal.pone.0189663. eCollection 2017.


EGR1 regulates cellular metabolism and survival in endocrine resistant breast cancer.

Shajahan-Haq AN, Boca SM, Jin L, Bhuvaneshwar K, Gusev Y, Cheema AK, Demas DD, Raghavan KS, Michalek R, Madhavan S, Clarke R.

Oncotarget. 2017 May 30;8(57):96865-96884. doi: 10.18632/oncotarget.18292. eCollection 2017 Nov 14.


Randomized clinical study of safety, pharmacokinetics, and pharmacodynamics of RIPK1 inhibitor GSK2982772 in healthy volunteers.

Weisel K, Scott NE, Tompson DJ, Votta BJ, Madhavan S, Povey K, Wolstenholme A, Simeoni M, Rudo T, Richards-Peterson L, Sahota T, Wang JG, Lich J, Finger J, Verticelli A, Reilly M, Gough PJ, Harris PA, Bertin J, Wang ML.

Pharmacol Res Perspect. 2017 Dec;5(6). doi: 10.1002/prp2.365.


ClinGen Cancer Somatic Working Group - standardizing and democratizing access to cancer molecular diagnostic data to drive translational research.

Madhavan S, Ritter D, Micheel C, Rao S, Roy A, Sonkin D, Mccoy M, Griffith M, Griffith OL, Mcgarvey P, Kulkarni S.

Pac Symp Biocomput. 2018;23:247-258.


ApoL1 Overexpression Drives Variant-Independent Cytotoxicity.

O'Toole JF, Schilling W, Kunze D, Madhavan SM, Konieczkowski M, Gu Y, Luo L, Wu Z, Bruggeman LA, Sedor JR.

J Am Soc Nephrol. 2018 Mar;29(3):869-879. doi: 10.1681/ASN.2016121322. Epub 2017 Nov 27.


A pilot study evaluating concordance between blood-based and patient-matched tumor molecular testing within pancreatic cancer patients participating in the Know Your Tumor (KYT) initiative.

Pishvaian MJ, Joseph Bender R, Matrisian LM, Rahib L, Hendifar A, Hoos WA, Mikhail S, Chung V, Picozzi V, Heartwell C, Mason K, Varieur K, Aberra M, Madhavan S, Petricoin E 3rd, Brody JR.

Oncotarget. 2016 Nov 8;8(48):83446-83456. doi: 10.18632/oncotarget.13225. eCollection 2017 Oct 13.


High aldosterone and cortisol levels in salt wasting congenital adrenal hyperplasia: a clinical conundrum.

Boddu SK, Madhavan S.

J Pediatr Endocrinol Metab. 2017 Nov 27;30(12):1327-1331. doi: 10.1515/jpem-2017-0166.


Healthcare Utilization and Costs During the Initial Phase of Care Among Elderly Women With Breast Cancer.

Vyas A, Madhavan SS, Sambamoorthi U, Pan XL, Regier M, Hazard H, Kalidindi S.

J Natl Compr Canc Netw. 2017 Nov;15(11):1401-1409. doi: 10.6004/jnccn.2017.0167.


The Cell Biology of APOL1.

O'Toole JF, Bruggeman LA, Madhavan S, Sedor JR.

Semin Nephrol. 2017 Nov;37(6):538-545. doi: 10.1016/j.semnephrol.2017.07.007. Review.


Seasonal below-ground metabolism in switchgrass.

Palmer NA, Saathoff AJ, Scully ED, Tobias CM, Twigg P, Madhavan S, Schmer M, Cahoon R, Sattler SE, Edmé SJ, Mitchell RB, Sarath G.

Plant J. 2017 Dec;92(6):1059-1075. doi: 10.1111/tpj.13742. Epub 2017 Nov 27.


Kidney Proximal Tubule Lipoapoptosis Is Regulated by Fatty Acid Transporter-2 (FATP2).

Khan S, Cabral PD, Schilling WP, Schmidt ZW, Uddin AN, Gingras A, Madhavan SM, Garvin JL, Schelling JR.

J Am Soc Nephrol. 2018 Jan;29(1):81-91. doi: 10.1681/ASN.2017030314. Epub 2017 Oct 9.


Editorial: Motor Priming for Motor Recovery: Neural Mechanisms and Clinical Perspectives.

Madhavan S, Stoykov ME.

Front Neurol. 2017 Sep 4;8:448. doi: 10.3389/fneur.2017.00448. eCollection 2017. No abstract available.


Association of the severity of diabetes-related complications with stage of breast cancer at diagnosis among elderly women with pre-existing diabetes.

Alenzi EO, Madhavan SS, Tan X.

Breast Cancer Res Treat. 2018 Jan;167(1):183-193. doi: 10.1007/s10549-017-4477-0. Epub 2017 Sep 2.


Comparison of the Mini-Balance Evaluations Systems Test with the Berg Balance Scale in relationship to walking speed and motor recovery post stroke.

Madhavan S, Bishnoi A.

Top Stroke Rehabil. 2017 Dec;24(8):579-584. doi: 10.1080/10749357.2017.1366097. Epub 2017 Aug 21.


Cardiopulmonary bypass time: every minute counts.

Madhavan S, Chan SP, Tan WC, Eng J, Li B, Luo HD, Teoh LK.

J Cardiovasc Surg (Torino). 2018 Apr;59(2):274-281. doi: 10.23736/S0021-9509.17.09864-0. Epub 2017 Jul 24.


APOL1 variants change C-terminal conformational dynamics and binding to SNARE protein VAMP8.

Madhavan SM, O'Toole JF, Konieczkowski M, Barisoni L, Thomas DB, Ganesan S, Bruggeman LA, Buck M, Sedor JR.

JCI Insight. 2017 Jul 20;2(14). pii: 92581. doi: 10.1172/jci.insight.92581. [Epub ahead of print]


Effect of thrombus aspiration on angiography and outcome in patients undergoing primary coronary angioplasty.

Chacko P, Jayaprakash K, Misiriya KJR, Madhavan S, Kumary VS, Jayaprasad N, Jayaprakash VL, George R.

Proc (Bayl Univ Med Cent). 2017 Jul;30(3):273-275.


Living Arrangements, Disability and Gender of Older Adults Among Rural South Africa.

Schatz E, Ralston M, Madhavan S, Collinson MA, Gómez-Olivé FX.

J Gerontol B Psychol Sci Soc Sci. 2018 Aug 14;73(6):1112-1122. doi: 10.1093/geronb/gbx081.


How do performance-based financing programmes measure quality of care? A descriptive analysis of 68 quality checklists from 28 low- and middle-income countries.

Josephson E, Gergen J, Coe M, Ski S, Madhavan S, Bauhoff S.

Health Policy Plan. 2017 Oct 1;32(8):1120-1126. doi: 10.1093/heapol/czx053.

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