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Items: 24

1.

Evaluation of the Efficacy of Liposomal Bupivacaine in Total Joint Arthroplasty.

Zamora FJ, Madduri RP, Philips AA, Miller N, Varghese M.

J Pharm Pract. 2019 Sep 16:897190019872577. doi: 10.1177/0897190019872577. [Epub ahead of print]

PMID:
31526058
2.

Reproducible big data science: A case study in continuous FAIRness.

Madduri R, Chard K, D'Arcy M, Jung SC, Rodriguez A, Sulakhe D, Deutsch E, Funk C, Heavner B, Richards M, Shannon P, Glusman G, Price N, Kesselman C, Foster I.

PLoS One. 2019 Apr 11;14(4):e0213013. doi: 10.1371/journal.pone.0213013. eCollection 2019.

3.

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

Jagodnik KM, Koplev S, Jenkins SL, Ohno-Machado L, Paten B, Schurer SC, Dumontier M, Verborgh R, Bui A, Ping P, McKenna NJ, Madduri R, Pillai A, Ma'ayan A.

J Biomed Inform. 2017 Jul;71:49-57. doi: 10.1016/j.jbi.2017.05.006. Epub 2017 May 10.

4.

A novel MERTK mutation causing retinitis pigmentosa.

Al-Khersan H, Shah KP, Jung SC, Rodriguez A, Madduri RK, Grassi MA.

Graefes Arch Clin Exp Ophthalmol. 2017 Aug;255(8):1613-1619. doi: 10.1007/s00417-017-3679-9. Epub 2017 May 1.

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7.

Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations.

Dinov ID, Heavner B, Tang M, Glusman G, Chard K, Darcy M, Madduri R, Pa J, Spino C, Kesselman C, Foster I, Deutsch EW, Price ND, Van Horn JD, Ames J, Clark K, Hood L, Hampstead BM, Dauer W, Toga AW.

PLoS One. 2016 Aug 5;11(8):e0157077. doi: 10.1371/journal.pone.0157077. eCollection 2016.

8.

LINE1 insertions as a genomic risk factor for schizophrenia: Preliminary evidence from an affected family.

Guffanti G, Gaudi S, Klengel T, Fallon JH, Mangalam H, Madduri R, Rodriguez A, DeCrescenzo P, Glovienka E, Sobell J, Klengel C, Pato M, Ressler KJ, Pato C, Macciardi F.

Am J Med Genet B Neuropsychiatr Genet. 2016 Jun;171(4):534-45. doi: 10.1002/ajmg.b.32437. Epub 2016 Mar 16.

PMID:
26990047
9.

Models and Simulations as a Service: Exploring the Use of Galaxy for Delivering Computational Models.

Walker MA, Madduri R, Rodriguez A, Greenstein JL, Winslow RL.

Biophys J. 2016 Mar 8;110(5):1038-43. doi: 10.1016/j.bpj.2015.12.041.

10.

A case study for cloud based high throughput analysis of NGS data using the globus genomics system.

Bhuvaneshwar K, Sulakhe D, Gauba R, Rodriguez A, Madduri R, Dave U, Lacinski L, Foster I, Gusev Y, Madhavan S.

Comput Struct Biotechnol J. 2014 Nov 7;13:64-74. doi: 10.1016/j.csbj.2014.11.001. eCollection 2015.

11.

Differential expression of alkaline phosphatase gene in proliferating primary lymphocytes and malignant lymphoid cell lines.

Latheef SA, Devanabanda M, Sankati S, Madduri R.

Immunol Lett. 2016 Feb;170:37-41. doi: 10.1016/j.imlet.2015.12.008. Epub 2015 Dec 28.

PMID:
26730846
12.

Big biomedical data as the key resource for discovery science.

Toga AW, Foster I, Kesselman C, Madduri R, Chard K, Deutsch EW, Price ND, Glusman G, Heavner BD, Dinov ID, Ames J, Van Horn J, Kramer R, Hood L.

J Am Med Inform Assoc. 2015 Nov;22(6):1126-31. doi: 10.1093/jamia/ocv077. Epub 2015 Jul 21.

13.

Experiences Building Globus Genomics: A Next-Generation Sequencing Analysis Service using Galaxy, Globus, and Amazon Web Services.

Madduri RK, Sulakhe D, Lacinski L, Liu B, Rodriguez A, Chard K, Dave UJ, Foster IT.

Concurr Comput. 2014 Sep 10;26(13):2266-2279.

14.

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.

Trubetskoy V, Rodriguez A, Dave U, Campbell N, Crawford EL, Cook EH, Sutcliffe JS, Foster I, Madduri R, Cox NJ, Davis LK.

Bioinformatics. 2015 Jan 15;31(2):187-93. doi: 10.1093/bioinformatics/btu591. Epub 2014 Sep 29.

15.

The role of tigecycline in the treatment of infections in light of the new black box warning.

Dixit D, Madduri RP, Sharma R.

Expert Rev Anti Infect Ther. 2014 Apr;12(4):397-400. doi: 10.1586/14787210.2014.894882. Epub 2014 Mar 6.

PMID:
24597542
16.

Cloud-based bioinformatics workflow platform for large-scale next-generation sequencing analyses.

Liu B, Madduri RK, Sotomayor B, Chard K, Lacinski L, Dave UJ, Li J, Liu C, Foster IT.

J Biomed Inform. 2014 Jun;49:119-33. doi: 10.1016/j.jbi.2014.01.005. Epub 2014 Jan 22.

17.

Utilisation of a thoracic oncology database to capture radiological and pathological images for evaluation of response to chemotherapy in patients with malignant pleural mesothelioma.

Carey GB, Kazantsev S, Surati M, Rolle CE, Kanteti A, Sadiq A, Bahroos N, Raumann B, Madduri R, Dave P, Starkey A, Hensing T, Husain AN, Vokes EE, Vigneswaran W, Armato SG 3rd, Kindler HL, Salgia R.

BMJ Open. 2012 Oct 26;2(5). pii: e001620. doi: 10.1136/bmjopen-2012-001620. Print 2012.

18.

Enabling collaborative research using the Biomedical Informatics Research Network (BIRN).

Helmer KG, Ambite JL, Ames J, Ananthakrishnan R, Burns G, Chervenak AL, Foster I, Liming L, Keator D, Macciardi F, Madduri R, Navarro JP, Potkin S, Rosen B, Ruffins S, Schuler R, Turner JA, Toga A, Williams C, Kesselman C; Biomedical Informatics Research Network.

J Am Med Inform Assoc. 2011 Jul-Aug;18(4):416-22. doi: 10.1136/amiajnl-2010-000032. Epub 2011 Apr 22.

19.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

20.

A Comparison of Using Taverna and BPEL in Building Scientific Workflows: the case of caGrid.

Tan W, Missier P, Foster I, Madduri R, Goble C.

Concurr Comput. 2010 Jun 25;22(9):1098-1117.

21.

e-Science, caGrid, and Translational Biomedical Research.

Saltz J, Kurc T, Hastings S, Langella S, Oster S, Ervin D, Sharma A, Pan T, Gurcan M, Permar J, Ferreira R, Payne P, Catalyurek U, Caserta E, Leone G, Ostrowski MC, Madduri R, Foster I, Madhavan S, Buetow KH, Shanbhag K, Siegel E.

Computer (Long Beach Calif). 2008 Nov;41(11):58-66.

22.

caGrid 1.0: a Grid enterprise architecture for cancer research.

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J.

AMIA Annu Symp Proc. 2007 Oct 11:573-7.

23.

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

Saltz J, Hastings S, Langella S, Oster S, Kurc T, Payne P, Ferreira R, Plale B, Goble C, Ervin D, Sharma A, Pan T, Permar J, Brezany P, Siebenlist F, Madduri R, Foster I, Shanbhag K, Mead C, Chue Hong N.

Stud Health Technol Inform. 2008;138:224-37.

24.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J.

J Am Med Inform Assoc. 2008 Mar-Apr;15(2):138-49. Epub 2007 Dec 20.

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