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Unlocking the potential of in silico chemical safety assessment - A report on a cross-sector symposium on current opportunities and future challenges.

Cronin MTD, Madden JC, Yang C, Worth AP.

Comput Toxicol. 2019 May;10:38-43. doi: 10.1016/j.comtox.2018.12.006.


A single factor explanation for associative learning performance on colour discrimination problems in common pheasants (Phasianus colchicus).

van Horik JO, Langley EJG, Whiteside MA, Madden JR.

Intelligence. 2019 May-Jun;74:53-61. doi: 10.1016/j.intell.2018.07.001.


Recommendations for Effective Integration of Ethics and Responsible Conduct of Research (E/RCR) Education into Course-Based Undergraduate Research Experiences: A Meeting Report.

Diaz-Martinez LA, Fisher GR, Esparza D, Bhatt JM, D'Arcy CE, Apodaca J, Brownell S, Corwin L, Davis WB, Floyd KW, Killion PJ, Madden J, Marsteller P, Mayfield-Meyer T, McDonald KK, Rosenberg M, Yarborough MA, Olimpo JT.

CBE Life Sci Educ. 2019 Jun;18(2):mr2. doi: 10.1187/cbe.18-10-0203.


Next generation physiologically based kinetic (NG-PBK) models in support of regulatory decision making.

Paini A, Leonard JA, Joossens E, Bessems JGM, Desalegn A, Dorne JL, Gosling JP, Heringa MB, Klaric M, Kliment T, Kramer NI, Loizou G, Louisse J, Lumen A, Madden JC, Patterson EA, Proen├ža S, Punt A, Setzer RW, Suciu N, Troutman J, Yoon M, Worth A, Tan YM.

Comput Toxicol. 2019 Feb;9:61-72. doi: 10.1016/j.comtox.2018.11.002. Review.


Unique bioinformatic approach and comprehensive reanalysis improve diagnostic yield of clinical exomes.

Schmitz-Abe K, Li Q, Rosen SM, Nori N, Madden JA, Genetti CA, Wojcik MH, Ponnaluri S, Gubbels CS, Picker JD, O'Donnell-Luria AH, Yu TW, Bodamer O, Brownstein CA, Beggs AH, Agrawal PB.

Eur J Hum Genet. 2019 Apr 12. doi: 10.1038/s41431-019-0401-x. [Epub ahead of print]


Predicting protein-ligand binding affinity and correcting crystal structures with quantum mechanical calculations: lactate dehydrogenase A.

Lukac I, Abdelhakim H, Ward RA, St-Gallay SA, Madden JC, Leach AG.

Chem Sci. 2019 Jan 4;10(7):2218-2227. doi: 10.1039/c8sc04564j. eCollection 2019 Feb 21.


Nodules, tumors, and hyperpigmented patches.

Madden J, Banta J, Beachkofsky T.

J Fam Pract. 2019 Mar;68(2):E17-E20.


Mobile Aid to Assist with Care Decisions in Children with Autism Spectrum Disorder (ASD).

Khan A, Li K, Madden J.

J Healthc Eng. 2018 Nov 18;2018:9703101. doi: 10.1155/2018/9703101. eCollection 2018.


Diffuse facial rash in a former collegiate wrestler.

Madden J, Buck S, Beachkofsky T, Xia Y.

J Fam Pract. 2018 Dec;67(12):783-785.


Trends in vitamin D supplement use in a general female and breast cancer population in Ireland: A repeated cross-sectional study.

Madden JM, Duffy MJ, Zgaga L, Bennett K.

PLoS One. 2018 Dec 13;13(12):e0209033. doi: 10.1371/journal.pone.0209033. eCollection 2018.


The relationship between social rank and spatial learning in pheasants, Phasianus colchicus: cause or consequence?

Langley EJG, van Horik JO, Whiteside MA, Beardsworth CE, Madden JR.

PeerJ. 2018 Nov 13;6:e5738. doi: 10.7717/peerj.5738. eCollection 2018.


Molecular fingerprint-derived similarity measures for toxicological read-across: Recommendations for optimal use.

Mellor CL, Marchese Robinson RL, Benigni R, Ebbrell D, Enoch SJ, Firman JW, Madden JC, Pawar G, Yang C, Cronin MTD.

Regul Toxicol Pharmacol. 2019 Feb;101:121-134. doi: 10.1016/j.yrtph.2018.11.002. Epub 2018 Nov 20.


A critical review of adverse effects to the kidney: mechanisms, data sources, and in silico tools to assist prediction.

Pletz J, Enoch SJ, Jais DM, Mellor CL, Pawar G, Firman JW, Madden JC, Webb SD, Tagliati CA, Cronin MTD.

Expert Opin Drug Metab Toxicol. 2018 Dec;14(12):1225-1253. doi: 10.1080/17425255.2018.1539076. Epub 2018 Nov 25. Review.


Insertion position as well as the inserted TRS and gene sequences differentially affect the retention of foreign gene expression by simian hemorrhagic fever virus (SHFV).

Di H, Morantz EK, Sadhwani H, Madden JC Jr, Brinton MA.

Virology. 2018 Dec;525:150-160. doi: 10.1016/j.virol.2018.09.014. Epub 2018 Oct 1.


Size dimorphism and sexual segregation in pheasants: tests of three competing hypotheses.

Whiteside MA, van Horik JO, Langley EJG, Beardsworth CE, Madden JR.

PeerJ. 2018 Sep 28;6:e5674. doi: 10.7717/peerj.5674. eCollection 2018.


Low-Grade Papillary Schneiderian Carcinoma of the Sinonasal Cavity and Temporal Bone.

Brown CS, Abi Hachem R, Pendse A, Madden JF, Francis HW.

Ann Otol Rhinol Laryngol. 2018 Dec;127(12):974-977. doi: 10.1177/0003489418803391. Epub 2018 Sep 29.


Low survival of strongly footed pheasants may explain constraints on lateralization.

Whiteside MA, Bess MM, Frasnelli E, Beardsworth CE, Langley EJG, van Horik JO, Madden JR.

Sci Rep. 2018 Sep 13;8(1):13791. doi: 10.1038/s41598-018-32066-1.


Individuals in larger groups are more successful on spatial discrimination tasks.

Langley EJG, van Horik JO, Whiteside MA, Madden JR.

Anim Behav. 2018 Aug;142:87-93. doi: 10.1016/j.anbehav.2018.05.020.


Intra-individual variation in performance on novel variants of similar tasks influences single factor explanations of general cognitive processes.

van Horik JO, Langley EJG, Whiteside MA, Laker PR, Madden JR.

R Soc Open Sci. 2018 Jul 11;5(7):171919. doi: 10.1098/rsos.171919. eCollection 2018 Jul.


The quick are the dead: pheasants that are slow to reverse a learned association survive for longer in the wild.

Madden JR, Langley EJG, Whiteside MA, Beardsworth CE, van Horik JO.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 26;373(1756). pii: 20170297. doi: 10.1098/rstb.2017.0297.


Measuring and understanding individual differences in cognition.

Boogert NJ, Madden JR, Morand-Ferron J, Thornton A.

Philos Trans R Soc Lond B Biol Sci. 2018 Sep 26;373(1756). pii: 20170280. doi: 10.1098/rstb.2017.0280.


A Catalog of Spectra, Albedos, and Colors of Solar System Bodies for Exoplanet Comparison.

Madden JH, Kaltenegger L.

Astrobiology. 2018 Jul 31. doi: 10.1089/ast.2017.1763. [Epub ahead of print]


De novo vitamin D supplement use post-diagnosis is associated with breast cancer survival.

Madden JM, Murphy L, Zgaga L, Bennett K.

Breast Cancer Res Treat. 2018 Nov;172(1):179-190. doi: 10.1007/s10549-018-4896-6. Epub 2018 Jul 23.


Wilms Tumor After Orthotopic Liver Transplant in a Patient With Alagille Syndrome.

Carlos EC, Ajay D, Muniz-Alers S, Wechsler DS, Sushama DV, Rice HE, Madden J, Routh JC.

Urology. 2018 Nov;121:171-174. doi: 10.1016/j.urology.2018.05.020. Epub 2018 Jun 5.


CUL5 is required for thalidomide-dependent inhibition of cellular proliferation.

Kunkler B, Salamango D, DeBruine ZJ, Ploch C, Dean S, Grossens D, Hledin MP, Marquez GA, Madden J, Schnell A, Short M, Burnatowska-Hledin MA.

PLoS One. 2018 May 10;13(5):e0196760. doi: 10.1371/journal.pone.0196760. eCollection 2018.


Replacement of dietary saturated fat with unsaturated fats increases numbers of circulating endothelial progenitor cells and decreases numbers of microparticles: findings from the randomized, controlled Dietary Intervention and VAScular function (DIVAS) study.

Weech M, Altowaijri H, Mayneris-Perxachs J, Vafeiadou K, Madden J, Todd S, Jackson KG, Lovegrove JA, Yaqoob P.

Am J Clin Nutr. 2018 Jun 1;107(6):876-882. doi: 10.1093/ajcn/nqy018.


Analysis and comparison of focused ion beam milling and vibratory polishing sample surface preparation methods for porosity study of U-Mo plate fuel for research and test reactors.

Westman B, Miller B, Jue JF, Aitkaliyeva A, Keiser D Jr, Madden J, Tucker JD.

Micron. 2018 Jul;110:57-66. doi: 10.1016/j.micron.2018.04.010. Epub 2018 May 2.


Preliminary Efficacy Testing of the Disinfectant MicrobeCare XLP for Potential Use in Military Operational Environments.

Madden JF, Henrichs L, Ervin MD, Lospinoso J, Beachkofsky TM, Hardin CA.

Mil Med. 2018 Nov 1;183(11-12):e348-e353. doi: 10.1093/milmed/usy039.


Near Real-time Surveillance for Consequences of Health Policies Using Sequential Analysis.

Lu CY, Penfold RB, Toh S, Sturtevant JL, Madden JM, Simon G, Ahmedani BK, Clarke G, Coleman KJ, Copeland LA, Daida YG, Davis RL, Hunkeler EM, Owen-Smith A, Raebel MA, Rossom R, Soumerai SB, Kulldorff M.

Med Care. 2018 May;56(5):365-372. doi: 10.1097/MLR.0000000000000893.


Heterogeneity of Human Breast Stem and Progenitor Cells as Revealed by Transcriptional Profiling.

Colacino JA, Azizi E, Brooks MD, Harouaka R, Fouladdel S, McDermott SP, Lee M, Hill D, Madden J, Boerner J, Cote ML, Sartor MA, Rozek LS, Wicha MS.

Stem Cell Reports. 2018 May 8;10(5):1596-1609. doi: 10.1016/j.stemcr.2018.03.001. Epub 2018 Mar 29.


Do detour tasks provide accurate assays of inhibitory control?

van Horik JO, Langley EJG, Whiteside MA, Laker PR, Beardsworth CE, Madden JR.

Proc Biol Sci. 2018 Mar 28;285(1875). pii: 20180150. doi: 10.1098/rspb.2018.0150.


Olaparib-induced Adaptive Response Is Disrupted by FOXM1 Targeting that Enhances Sensitivity to PARP Inhibition.

Fang P, Madden JA, Neums L, Moulder RK, Forrest ML, Chien J.

Mol Cancer Res. 2018 Jun;16(6):961-973. doi: 10.1158/1541-7786.MCR-17-0607. Epub 2018 Mar 15.


In vivo assembly of a truncated H subunit mutant of the Rhodobacter sphaeroides photosynthetic reaction centre and direct electron transfer from the QA quinone to an electrode.

Jun D, Dhupar HS, Mahmoudzadeh A, Duong F, Madden JDW, Beatty JT.

Photosynth Res. 2018 Aug;137(2):227-239. doi: 10.1007/s11120-018-0493-0. Epub 2018 Mar 9.


Group social rank is associated with performance on a spatial learning task.

Langley EJG, van Horik JO, Whiteside MA, Madden JR.

R Soc Open Sci. 2018 Feb 14;5(2):171475. doi: 10.1098/rsos.171475. eCollection 2018 Feb.


Term small-for-gestational-age infants from low-risk women are at significantly greater risk of adverse neonatal outcomes.

Madden JV, Flatley CJ, Kumar S.

Am J Obstet Gynecol. 2018 May;218(5):525.e1-525.e9. doi: 10.1016/j.ajog.2018.02.008. Epub 2018 Feb 17.


Implementation Research: Embracing Practitioners' Views.

Feuerstein JL, Olswang LB, Greenslade KJ, Dowden P, Pinder GL, Madden J.

J Speech Lang Hear Res. 2018 Mar 15;61(3):645-657. doi: 10.1044/2017_JSLHR-L-17-0154.


Assessment and Reproducibility of Quantitative Structure-Activity Relationship Models by the Nonexpert.

Patel M, Chilton ML, Sartini A, Gibson L, Barber C, Covey-Crump L, Przybylak KR, Cronin MTD, Madden JC.

J Chem Inf Model. 2018 Mar 26;58(3):673-682. doi: 10.1021/acs.jcim.7b00523. Epub 2018 Feb 22.


Morning surge in blood pressure using a random-effects multiple-component cosinor model.

Madden JM, Browne LD, Li X, Kearney PM, Fitzgerald AP.

Stat Med. 2018 May 10;37(10):1682-1695. doi: 10.1002/sim.7607. Epub 2018 Jan 29.


Intracranial Ewing sarcoma: four pediatric examples.

Yang MJ, Whelan R, Madden J, Mulcahy Levy JM, Kleinschmidt-DeMasters BK, Hankinson TC, Foreman NK, Handler MH.

Childs Nerv Syst. 2018 Mar;34(3):441-448. doi: 10.1007/s00381-017-3684-7. Epub 2017 Dec 28.


Effects of Transitioning to Medicare Part D on Access to Drugs for Medical Conditions among Dual Enrollees with Cancer.

Adams AS, Madden JM, Zhang F, Lu CY, Ross-Degnan D, Lee A, Soumerai SB, Gilden D, Chawla N, Griggs JJ.

Value Health. 2017 Dec;20(10):1345-1354. doi: 10.1016/j.jval.2017.05.023. Epub 2017 Jul 6.


Plasma Protein Turnover Rates in Rats Using Stable Isotope Labeling, Global Proteomics, and Activity-Based Protein Profiling.

Smith JN, Tyrrell KJ, Hansen JR, Thomas DG, Murphree TA, Shukla A, Luders T, Madden JM, Li Y, Wright AT, Piehowski PD.

Anal Chem. 2017 Dec 19;89(24):13559-13566. doi: 10.1021/acs.analchem.7b03984. Epub 2017 Dec 6.


Why did the pheasant cross the road? Long-term road mortality patterns in relation to management changes.

Madden JR, Perkins SE.

R Soc Open Sci. 2017 Oct 4;4(10):170617. doi: 10.1098/rsos.170617. eCollection 2017 Oct.


Converging evidence for [coronal] underspecification in English-speaking adults.

Cummings A, Madden J, Hefta K.

J Neurolinguistics. 2017 Nov;44:147-162. doi: 10.1016/j.jneuroling.2017.05.003. Epub 2017 May 29.


Expanded subgenomic mRNA transcriptome and coding capacity of a nidovirus.

Di H, Madden JC Jr, Morantz EK, Tang HY, Graham RL, Baric RS, Brinton MA.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):E8895-E8904. doi: 10.1073/pnas.1706696114. Epub 2017 Oct 4.


Turbocharging Matched Molecular Pair Analysis: Optimizing the Identification and Analysis of Pairs.

Lukac I, Zarnecka J, Griffen EJ, Dossetter AG, St-Gallay SA, Enoch SJ, Madden JC, Leach AG.

J Chem Inf Model. 2017 Oct 23;57(10):2424-2436. doi: 10.1021/acs.jcim.7b00335. Epub 2017 Oct 2.


A novel continuous inhibitory-control task: variation in individual performance by young pheasants (Phasianus colchicus).

Meier C, Pant SR, van Horik JO, Laker PR, Langley EJG, Whiteside MA, Verbruggen F, Madden JR.

Anim Cogn. 2017 Nov;20(6):1035-1047. doi: 10.1007/s10071-017-1120-8. Epub 2017 Aug 9.


Differences in social preference between the sexes during ontogeny drive segregation in a precocial species.

Whiteside MA, van Horik JO, Langley EJG, Beardsworth CE, Laker PR, Madden JR.

Behav Ecol Sociobiol. 2017;71(7):103. doi: 10.1007/s00265-017-2332-2. Epub 2017 Jun 20.


In Silico Prediction of Organ Level Toxicity: Linking Chemistry to Adverse Effects.

Cronin MTD, Enoch SJ, Mellor CL, Przybylak KR, Richarz AN, Madden JC.

Toxicol Res. 2017 Jul;33(3):173-182. doi: 10.5487/TR.2017.33.3.173. Epub 2017 Jul 15. Review.


Moving Triadic Gaze Intervention Into Practice: Measuring Clinician Attitude and Implementation Fidelity.

Feuerstein J, Olswang LB, Greenslade K, Pinder GL, Dowden P, Madden J.

J Speech Lang Hear Res. 2017 May 24;60(5):1285-1298. doi: 10.1044/2016_JSLHR-L-16-0189.


Functional conductive nanomaterials via polymerisation in nano-channels: PEDOT in a MOF.

Wang T, Farajollahi M, Henke S, Zhu T, Bajpe SR, Sun S, Barnard JS, Lee JS, Madden JDW, Cheetham AK, Smoukov SK.

Mater Horiz. 2017 Jan 1;4(1):64-71. doi: 10.1039/c6mh00230g. Epub 2016 Aug 22.

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