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Items: 11


Genome-wide discovery of epistatic loci affecting antibiotic resistance in Neisseria gonorrhoeae using evolutionary couplings.

Schubert B, Maddamsetti R, Nyman J, Farhat MR, Marks DS.

Nat Microbiol. 2019 Feb;4(2):328-338. doi: 10.1038/s41564-018-0309-1. Epub 2018 Dec 3.


Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature.

Maddamsetti R, Johnson DT, Spielman SJ, Petrie KL, Marks DS, Meyer JR.

Evolution. 2018 Oct;72(10):2234-2243. doi: 10.1111/evo.13586. Epub 2018 Sep 11.


Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection.

Maddamsetti R, Lenski RE.

PLoS Genet. 2018 Jan 31;14(1):e1007199. doi: 10.1371/journal.pgen.1007199. eCollection 2018 Jan.


Core Genes Evolve Rapidly in the Long-Term Evolution Experiment with Escherichia coli.

Maddamsetti R, Hatcher PJ, Green AG, Williams BL, Marks DS, Lenski RE.

Genome Biol Evol. 2017 Apr 1;9(4):1072-1083. doi: 10.1093/gbe/evx064.


Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.

Stapleton JA, Kim J, Hamilton JP, Wu M, Irber LC, Maddamsetti R, Briney B, Newton L, Burton DR, Brown CT, Chan C, Buell CR, Whitehead TA.

PLoS One. 2016 Jan 20;11(1):e0147229. doi: 10.1371/journal.pone.0147229. eCollection 2016.


Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli.

Lenski RE, Wiser MJ, Ribeck N, Blount ZD, Nahum JR, Morris JJ, Zaman L, Turner CB, Wade BD, Maddamsetti R, Burmeister AR, Baird EJ, Bundy J, Grant NA, Card KJ, Rowles M, Weatherspoon K, Papoulis SE, Sullivan R, Clark C, Mulka JS, Hajela N.

Proc Biol Sci. 2015 Dec 22;282(1821):20152292. doi: 10.1098/rspb.2015.2292.


Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment.

Maddamsetti R, Hatcher PJ, Cruveiller S, Médigue C, Barrick JE, Lenski RE.

Mol Biol Evol. 2015 Nov;32(11):2897-904. doi: 10.1093/molbev/msv161. Epub 2015 Jul 20.


Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli.

Maddamsetti R, Lenski RE, Barrick JE.

Genetics. 2015 Jun;200(2):619-31. doi: 10.1534/genetics.115.176677. Epub 2015 Apr 24.


Phylogenomic analysis of the uracil-DNA glycosylase superfamily.

Lucas-Lledó JI, Maddamsetti R, Lynch M.

Mol Biol Evol. 2011 Mar;28(3):1307-17. doi: 10.1093/molbev/msq318. Epub 2010 Dec 6.


A universal RNAi-based logic evaluator that operates in mammalian cells.

Rinaudo K, Bleris L, Maddamsetti R, Subramanian S, Weiss R, Benenson Y.

Nat Biotechnol. 2007 Jul;25(7):795-801. Epub 2007 May 21.


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