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The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.

Madan S, Szostak J, Komandur Elayavilli R, Tsai RT, Ali M, Qian L, Rastegar-Mojarad M, Hoeng J, Fluck J.

Database (Oxford). 2019 Jan 1;2019. pii: baz084. doi: 10.1093/database/baz084.


SEAweb: the small RNA Expression Atlas web application.

Rahman RU, Liebhoff AM, Bansal V, Fiosins M, Rajput A, Sattar A, Magruder DS, Madan S, Sun T, Gautam A, Heins S, Liwinski T, Bethune J, Trenkwalder C, Fluck J, Mollenhauer B, Bonn S.

Nucleic Acids Res. 2019 Oct 10. pii: gkz869. doi: 10.1093/nar/gkz869. [Epub ahead of print]


Utilization rates and clinical outcomes of hepatitis C positive donor hearts in the contemporary era.

Madan S, Patel SR, Rahgozar K, Saeed O, Murthy S, Vukelic S, Sims DB, Shin JJ, Goldstein DJ, Jorde UP.

J Heart Lung Transplant. 2019 Sep;38(9):907-917. doi: 10.1016/j.healun.2019.06.023. Epub 2019 Jun 28.


Letter to the Editor.

Rangasamy S, Madan S, Saeed O, Jorde UP, Patel SR, Goldstein DJ, Negassa A.

ASAIO J. 2019 Jul 15. doi: 10.1097/MAT.0000000000001037. [Epub ahead of print] No abstract available.


Frequency and clinical outcomes of CYP2C19 genotype-guided escalation and de-escalation of antiplatelet therapy in a real-world clinical setting.

Martin J, Williams AK, Klein MD, Sriramoju VB, Madan S, Rossi JS, Clarke M, Cicci JD, Cavallari LH, Weck KE, Stouffer GA, Lee CR.

Genet Med. 2019 Jul 18. doi: 10.1038/s41436-019-0611-1. [Epub ahead of print]


Hemolysis and Nonhemorrhagic Stroke During Venoarterial Extracorporeal Membrane Oxygenation.

Saeed O, Jakobleff WA, Forest SJ, Chinnadurai T, Mellas N, Rangasamy S, Xia Y, Madan S, Acharya P, Algodi M, Patel SR, Shin J, Vukelic S, Sims DB, Reyes Gil M, Billett HH, Kizer JR, Goldstein DJ, Jorde UP.

Ann Thorac Surg. 2019 Sep;108(3):756-763. doi: 10.1016/j.athoracsur.2019.03.030. Epub 2019 Apr 10.


Correction: CAPN1 is a novel binding partner and regulator of the tumor suppressor NF1 in melanoma.

Alon M, Arafeh R, Lee JS, Madan S, Kalaora S, Nagler A, Abgarian T, Greenberg P, Ruppin E, Samuels Y.

Oncotarget. 2019 Feb 12;10(13):1344. doi: 10.18632/oncotarget.26685. eCollection 2019 Feb 12.


Continuous-Flow Left Ventricular Assist Device Survival Improves With Multidisciplinary Approach.

Jorde UP, Shah AM, Sims DB, Madan S, Siddiqi N, Luke A, Saeed O, Patel SR, Murthy S, Shin J, Oviedo J, Watts S, Jakobleff W, Forest S, Vukelic S, Belov D, Puius Y, Minamoto G, Muggia V, Carlese A, Leung S, Rahmanian M, Leff J, Goldstein D.

Ann Thorac Surg. 2019 Aug;108(2):508-516. doi: 10.1016/j.athoracsur.2019.01.063. Epub 2019 Mar 7.


Support for Resettling Refugees: The Role of Fixed Versus Growth Mind-Sets.

Madan S, Basu S, Rattan A, Savani K.

Psychol Sci. 2019 Feb;30(2):238-249. doi: 10.1177/0956797618813561. Epub 2019 Jan 11.


Outcomes of heart transplantation in patients with human immunodeficiency virus.

Madan S, Patel SR, Saeed O, Sims DB, Shin JJ, Goldstein DJ, Jorde UP.

Am J Transplant. 2019 May;19(5):1529-1535. doi: 10.1111/ajt.15257. Epub 2019 Jan 25.


Avascular necrosis post unstable slipped capital femoral epiphysis: a treatment algorithm with staged hinged hip distraction: mid-term results.

Balakumar B, Madan S.

Hip Int. 2019 Jul;29(4):438-445. doi: 10.1177/1120700018811313. Epub 2018 Nov 20.


Design, preparation, and evaluation of liposomal gel formulations for treatment of acne: in vitro and in vivo studies.

Madan S, Nehate C, Barman TK, Rathore AS, Koul V.

Drug Dev Ind Pharm. 2019 Mar;45(3):395-404. doi: 10.1080/03639045.2018.1546310. Epub 2018 Nov 30.


Lifestyle Modifications for Preventing and Treating Heart Failure.

Aggarwal M, Bozkurt B, Panjrath G, Aggarwal B, Ostfeld RJ, Barnard ND, Gaggin H, Freeman AM, Allen K, Madan S, Massera D, Litwin SE; American College of Cardiology’s Nutrition and Lifestyle Committee of the Prevention of Cardiovascular Disease Council.

J Am Coll Cardiol. 2018 Nov 6;72(19):2391-2405. doi: 10.1016/j.jacc.2018.08.2160. Review.


Cerebral venous thrombosis with auto-immune hyperthyroidism.

Madan S, Chaudhuri Z.

Indian J Ophthalmol. 2018 Nov;66(11):1649-1651. doi: 10.4103/ijo.IJO_23_18.


Publisher Correction: Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma.

Auslander N, Zhang G, Lee JS, Frederick DT, Miao B, Moll T, Tian T, Wei Z, Madan S, Sullivan RJ, Boland G, Flaherty K, Herlyn M, Ruppin E.

Nat Med. 2018 Dec;24(12):1942. doi: 10.1038/s41591-018-0247-8.


The gut microbiome and transplantation: An amazon jungle.

Madan S, Mehra MR.

J Heart Lung Transplant. 2018 Sep;37(9):1043-1044. doi: 10.1016/j.healun.2018.06.013. Epub 2018 Jun 28. No abstract available.


Moderate and severe SCFE (Slipped Capital Femoral Epiphysis) arthroscopic osteoplasty vs open neck osteotomy-a retrospective analysis of results.

Balakumar B, Flatt E, Madan S.

Int Orthop. 2019 Oct;43(10):2375-2382. doi: 10.1007/s00264-018-4069-6. Epub 2018 Aug 22.


CAPN1 is a novel binding partner and regulator of the tumor suppressor NF1 in melanoma.

Alon M, Arafeh R, Lee JS, Madan S, Kalaora S, Nagler A, Abgarian T, Greenberg P, Ruppin E, Samuels Y.

Oncotarget. 2018 Jul 27;9(58):31264-31277. doi: 10.18632/oncotarget.25805. eCollection 2018 Jul 27. Erratum in: Oncotarget. 2019 Feb 12;10(13):1344.


Robust prediction of response to immune checkpoint blockade therapy in metastatic melanoma.

Auslander N, Zhang G, Lee JS, Frederick DT, Miao B, Moll T, Tian T, Wei Z, Madan S, Sullivan RJ, Boland G, Flaherty K, Herlyn M, Ruppin E.

Nat Med. 2018 Oct;24(10):1545-1549. doi: 10.1038/s41591-018-0157-9. Epub 2018 Aug 20. Erratum in: Nat Med. 2018 Dec;24(12):1942.


Cardiac transplantation from non-viremic hepatitis C donors.

Patel SR, Madan S, Saeed O, Sims DB, Shin JJ, Nucci C, Borukhov E, Goldstein DY, Jakobleff W, Forest S, Vukelic S, Murthy S, Reinus J, Puius Y, Goldstein DJ, Jorde UP.

J Heart Lung Transplant. 2018 Oct;37(10):1254-1260. doi: 10.1016/j.healun.2018.06.012. Epub 2018 Aug 17.


Another Chapter in the Continuing Saga of "Precision Percutaneous Coronary Intervention".

Stouffer GA, Madan S, Rossi JS.

JACC Cardiovasc Interv. 2018 Aug 13;11(15):1479-1481. doi: 10.1016/j.jcin.2018.06.050. No abstract available.


Arginase overexpression in neurons and its effect on traumatic brain injury.

Madan S, Kron B, Jin Z, Al Shamy G, Campeau PM, Sun Q, Chen S, Cherian L, Chen Y, Munivez E, Jiang MM, Robertson C, Goodman C, Ratan RR, Lee B.

Mol Genet Metab. 2018 Sep;125(1-2):112-117. doi: 10.1016/j.ymgme.2018.07.007. Epub 2018 Jul 25.


Leser-Trélat Syndrome in a Male with Breast Carcinoma and Eyelid Basal Cell Carcinoma.

Garg R, Madan S, Prakash P, Chander R, Choudhary M.

Ocul Oncol Pathol. 2018 Apr;4(3):161-164. doi: 10.1159/000481354. Epub 2017 Nov 4.


Noninvasive Measures of Pulsatility and Blood Pressure During Continuous-Flow Left Ventricular Assist Device Support.

Rangasamy S, Madan S, Saeed O, Goldstein DJ, Jorde UP, Negassa A, Patel SR.

ASAIO J. 2019 Mar/Apr;65(3):241-246. doi: 10.1097/MAT.0000000000000805.


Recurrent anaphylaxis during cardiac catheterization due to ethylene oxide.

Hamad A, Iweala OI, Henderson C, Madan S, Stouffer GA 3rd, Commins SP, Kim EH.

J Allergy Clin Immunol Pract. 2018 Nov - Dec;6(6):2148-2150. doi: 10.1016/j.jaip.2018.04.017. Epub 2018 Apr 30. No abstract available.


Minimally invasive (MIS) Tönnis osteotomy- A technical annotation and review of short term results.

Balakumar B, Racy M, Madan S.

J Orthop. 2018 Jan 31;15(1):253-258. doi: 10.1016/j.jor.2018.01.043. eCollection 2018 Mar.


Amniotic Band Syndrome: A Review of 2 Cases.

Madan S, Chaudhuri Z.

Ophthalmic Plast Reconstr Surg. 2018 Jul/Aug;34(4):e110-e113. doi: 10.1097/IOP.0000000000001107.


Clinical Outcomes and Sustainability of Using CYP2C19 Genotype-Guided Antiplatelet Therapy After Percutaneous Coronary Intervention.

Lee CR, Sriramoju VB, Cervantes A, Howell LA, Varunok N, Madan S, Hamrick K, Polasek MJ, Lee JA, Clarke M, Cicci JD, Weck KE, Stouffer GA.

Circ Genom Precis Med. 2018 Apr;11(4):e002069. doi: 10.1161/CIRCGEN.117.002069.


Extra-articular deformity correction using Taylor spatial frame prior to total knee arthroplasty.

Tawari GJK, Maheshwari R, Madan SS.

Strategies Trauma Limb Reconstr. 2018 Nov;13(3):179-184. doi: 10.1007/s11751-018-0310-5. Epub 2018 Mar 20.


Folate supplementation in people with sickle cell disease.

Dixit R, Nettem S, Madan SS, Soe HHK, Abas AB, Vance LD, Stover PJ.

Cochrane Database Syst Rev. 2018 Mar 16;3:CD011130. doi: 10.1002/14651858.CD011130.pub3. Review.


Safety, tolerability, and preliminary activity of IMGN529, a CD37-targeted antibody-drug conjugate, in patients with relapsed or refractory B-cell non-Hodgkin lymphoma: a dose-escalation, phase I study.

Stathis A, Flinn IW, Madan S, Maddocks K, Freedman A, Weitman S, Zucca E, Munteanu MC, Lia Palomba M.

Invest New Drugs. 2018 Oct;36(5):869-876. doi: 10.1007/s10637-018-0570-4. Epub 2018 Feb 17.


Reply: Transient Wall Motion Abnormalities in Donor Hearts With Improved Left Ventricular Systolic Dysfunction: Takotsubo Revisited?

Madan S, Sims D, Saeed O, Patel SR, Jorde UP.

J Am Coll Cardiol. 2018 Jan 23;71(3):368-369. doi: 10.1016/j.jacc.2017.10.094. No abstract available.


A case study on Discrete Wavelet Transform based Hurst exponent for epilepsy detection.

Madan S, Srivastava K, Sharmila A, Mahalakshmi P.

J Med Eng Technol. 2018 Jan;42(1):9-17. doi: 10.1080/03091902.2017.1394390. Epub 2017 Nov 30.


Sildenafil Is Associated With Reduced Device Thrombosis and Ischemic Stroke Despite Low-Level Hemolysis on Heart Mate II Support.

Saeed O, Rangasamy S, Selevany I, Madan S, Fertel J, Eisenberg R, Aljoudi M, Patel SR, Shin J, Sims DB, Reyes Gil M, Goldstein DJ, Slepian MJ, Billett HH, Jorde UP.

Circ Heart Fail. 2017 Nov;10(11). pii: e004222. doi: 10.1161/CIRCHEARTFAILURE.117.004222.


BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions.

Dao P, Kim YA, Wojtowicz D, Madan S, Sharan R, Przytycka TM.

PLoS Comput Biol. 2017 Oct 12;13(10):e1005695. doi: 10.1371/journal.pcbi.1005695. eCollection 2017 Oct.


Bitot spot: early marker for avoidable blindness.

Madan S, Beri S.

CMAJ. 2017 Oct 10;189(40):E1264. doi: 10.1503/cmaj.170792. No abstract available.


Low ejection fraction in donor hearts is not directly associated with increased recipient mortality.

Chinnadurai T, Madan S, Patel SR, Jorde UP.

J Heart Lung Transplant. 2018 Mar;37(3):426. doi: 10.1016/j.healun.2017.08.003. Epub 2017 Aug 10. No abstract available.


Outcomes After Transplantation of Donor Hearts With Improving Left Ventricular Systolic Dysfunction.

Madan S, Saeed O, Vlismas P, Katsa I, Patel SR, Shin JJ, Jakobleff WA, Goldstein DJ, Sims DB, Jorde UP.

J Am Coll Cardiol. 2017 Sep 5;70(10):1248-1258. doi: 10.1016/j.jacc.2017.07.728.


Outcomes of Early Adolescent Donor Hearts in Adult Transplant Recipients.

Madan S, Patel SR, Vlismas P, Saeed O, Murthy S, Forest S, Jakobleff W, Sims D, Lamour JM, Hsu DT, Shin J, Goldstein D, Jorde UP.

JACC Heart Fail. 2017 Dec;5(12):879-887. doi: 10.1016/j.jchf.2017.05.004. Epub 2017 Aug 16.


Of Mice and Men: Comparative Analysis of Neuro-Inflammatory Mechanisms in Human and Mouse Using Cause-and-Effect Models.

Kodamullil AT, Iyappan A, Karki R, Madan S, Younesi E, Hofmann-Apitius M.

J Alzheimers Dis. 2017;59(3):1045-1055. doi: 10.3233/JAD-170255. Review.


Cessation of Continuous Flow Left Ventricular Assist Device-Related Gastrointestinal Bleeding After Heart Transplantation.

Patel SR, Oh KT, Ogriki T, Sims D, Shin JJ, Madan S, Saeed O, Goldstein DJ, Jorde UP.

ASAIO J. 2018 Mar/Apr;64(2):191-195. doi: 10.1097/MAT.0000000000000624.


A non-mosaic PORCN mutation in a male with severe congenital anomalies overlapping focal dermal hypoplasia.

Madan S, Liu W, Lu JT, Sutton VR, Toth B, Joe P, Waterson JR, Gibbs RA, Van den Veyver IB, Lammer EJ, Campeau PM, Lee BH.

Mol Genet Metab Rep. 2017 Jun 7;12:57-61. doi: 10.1016/j.ymgmr.2017.06.002. eCollection 2017 Sep.


Outcome of various Hydrophobic Acrylic Intraocular Lens Implantations in Children with Congenital Cataract.

Sukhija J, Kaur S, Ram J, Yangzes S, Madan S, Jinagal J.

Eur J Ophthalmol. 2017 Nov 8;27(6):711-715. doi: 10.5301/ejo.5000969.


Association of centre volume and in-hospital mortality in heart failure hospitalisations.

Madan S, Sims D, Saeed O, Patel SR, Shin JJ, Jorde UP.

Postgrad Med J. 2017 Sep;93(1103):534-540. doi: 10.1136/postgradmedj-2016-134697. Epub 2017 Mar 2.


An ensemble micro neural network approach for elucidating interactions between zinc finger proteins and their target DNA.

Dutta S, Madan S, Parikh H, Sundar D.

BMC Genomics. 2016 Dec 22;17(Suppl 13):1033. doi: 10.1186/s12864-016-3323-9.


Exploiting the recognition code for elucidating the mechanism of zinc finger protein-DNA interactions.

Dutta S, Madan S, Sundar D.

BMC Genomics. 2016 Dec 22;17(Suppl 13):1037. doi: 10.1186/s12864-016-3324-8.


Use of novel oral anticoagulant agents in venous thromboembolism.

Madan S, Shah S, Dale P, Partovi S, Parikh SA.

Cardiovasc Diagn Ther. 2016 Dec;6(6):570-581. doi: 10.21037/cdt.2016.11.17. Review.


Association of Nasal Mucosal Vascular Alterations, Gastrointestinal Arteriovenous Malformations, and Bleeding in Patients With Continuous-Flow Left Ventricular Assist Devices.

Patel SR, Madan S, Saeed O, Algodi M, Luke A, Gibber M, Goldstein DJ, Jorde UP.

JACC Heart Fail. 2016 Dec;4(12):962-970. doi: 10.1016/j.jchf.2016.08.005. Epub 2016 Oct 12.


Pioneers in Vaccinology.

Madan S, Singhal T, Soman R.

J Assoc Physicians India. 2016 Apr;64(4):100-102. No abstract available.


Fasting intolerance and recurrent hypoglycemia: Ponder for Sheehan's.

Pahadiya HR, Lakhotia M, Gandhi R, Yadav RS, Madan S.

Indian J Endocrinol Metab. 2016 Sep-Oct;20(5):739-740. No abstract available.

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