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Items: 48


Arginine, ornithine and citrulline supplementation in rainbow trout: Free amino acid dynamics and gene expression responses to bacterial infection.

Clark TC, Tinsley J, Sigholt T, Macqueen DJ, Martin SAM.

Fish Shellfish Immunol. 2020 Mar;98:374-390. doi: 10.1016/j.fsi.2020.01.026. Epub 2020 Jan 20.


Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon.

Kim JH, Macqueen DJ, Winton JR, Hansen JD, Park H, Devlin RH.

BMC Genomics. 2019 Dec 27;20(1):1024. doi: 10.1186/s12864-019-6408-4.


Supplementation of arginine, ornithine and citrulline in rainbow trout (Oncorhynchus mykiss): Effects on growth, amino acid levels in plasma and gene expression responses in liver tissue.

Clark TC, Tinsley J, Sigholt T, Macqueen DJ, Martin SAM.

Comp Biochem Physiol A Mol Integr Physiol. 2020 Mar;241:110632. doi: 10.1016/j.cbpa.2019.110632. Epub 2019 Dec 5.


SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes.

Mulugeta TD, Nome T, To TH, Gundappa MK, Macqueen DJ, Våge DI, Sandve SR, Hvidsten TR.

BMC Genomics. 2019 Sep 2;20(1):694. doi: 10.1186/s12864-019-6051-0.


Phylogenetic Reclassification of Vertebrate Melatonin Receptors To Include Mel1d.

Denker E, Ebbesson LOE, Hazlerigg DG, Macqueen DJ.

G3 (Bethesda). 2019 Oct 7;9(10):3225-3238. doi: 10.1534/g3.119.400170.


Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons.

Redmond AK, Zou J, Secombes CJ, Macqueen DJ, Dooley H.

Front Immunol. 2019 Jul 12;10:1558. doi: 10.3389/fimmu.2019.01558. eCollection 2019.


The AMPK system of salmonid fishes was expanded through genome duplication and is regulated by growth and immune status in muscle.

Causey DR, Kim JH, Devlin RH, Martin SAM, Macqueen DJ.

Sci Rep. 2019 Jul 8;9(1):9819. doi: 10.1038/s41598-019-46129-4.


Rainbow trout (Oncorhynchus mykiss) urea cycle and polyamine synthesis gene families show dynamic expression responses to inflammation.

Clark TC, Tinsley J, Macqueen DJ, Martin SAM.

Fish Shellfish Immunol. 2019 Jun;89:290-300. doi: 10.1016/j.fsi.2019.03.075. Epub 2019 Apr 1.


Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets.

Redmond AK, Macqueen DJ, Dooley H.

BMC Evol Biol. 2018 Nov 15;18(1):169. doi: 10.1186/s12862-018-1290-2.


Atlantic salmon (Salmo salar L.) genetics in the 21st century: taking leaps forward in aquaculture and biological understanding.

Houston RD, Macqueen DJ.

Anim Genet. 2019 Feb;50(1):3-14. doi: 10.1111/age.12748. Epub 2018 Nov 14. Review.


Nanopore sequencing for rapid diagnostics of salmonid RNA viruses.

Gallagher MD, Matejusova I, Nguyen L, Ruane NM, Falk K, Macqueen DJ.

Sci Rep. 2018 Nov 5;8(1):16307. doi: 10.1038/s41598-018-34464-x.


High-throughput proteomic profiling of the fish liver following bacterial infection.

Causey DR, Pohl MAN, Stead DA, Martin SAM, Secombes CJ, Macqueen DJ.

BMC Genomics. 2018 Oct 1;19(1):719. doi: 10.1186/s12864-018-5092-0.


Haptoglobin Is a Divergent MASP Family Member That Neofunctionalized To Recycle Hemoglobin via CD163 in Mammals.

Redmond AK, Ohta Y, Criscitiello MF, Macqueen DJ, Flajnik MF, Dooley H.

J Immunol. 2018 Oct 15;201(8):2483-2491. doi: 10.4049/jimmunol.1800508. Epub 2018 Sep 7.


Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth.

Causey DR, Kim JH, Stead DA, Martin SAM, Devlin RH, Macqueen DJ.

J Proteomics. 2019 Feb 10;192:114-124. doi: 10.1016/j.jprot.2018.08.013. Epub 2018 Aug 25.


Growth hormone transgenesis in coho salmon disrupts muscle immune function impacting cross-talk with growth systems.

Alzaid A, Kim JH, Devlin RH, Martin SAM, Macqueen DJ.

J Exp Biol. 2018 Jul 4;221(Pt 13). pii: jeb173146. doi: 10.1242/jeb.173146.


Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes.

Garcia de la Serrana D, Macqueen DJ.

Front Endocrinol (Lausanne). 2018 Mar 12;9:80. doi: 10.3389/fendo.2018.00080. eCollection 2018. Review.


Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture.

Macqueen DJ, Primmer CR, Houston RD, Nowak BF, Bernatchez L, Bergseth S, Davidson WS, Gallardo-Escárate C, Goldammer T, Guiguen Y, Iturra P, Kijas JW, Koop BF, Lien S, Maass A, Martin SAM, McGinnity P, Montecino M, Naish KA, Nichols KM, Ólafsson K, Omholt SW, Palti Y, Plastow GS, Rexroad CE Rd, Rise ML, Ritchie RJ, Sandve SR, Schulte PM, Tello A, Vidal R, Vik JO, Wargelius A, Yáñez JM; FAASG Consortium.

BMC Genomics. 2017 Jun 27;18(1):484. doi: 10.1186/s12864-017-3862-8.


Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification.

Robertson FM, Gundappa MK, Grammes F, Hvidsten TR, Redmond AK, Lien S, Martin SAM, Holland PWH, Sandve SR, Macqueen DJ.

Genome Biol. 2017 Jun 14;18(1):111. doi: 10.1186/s13059-017-1241-z.


Evolutionary history of the T cell receptor complex as revealed by small-spotted catshark (Scyliorhinus canicula).

Pettinello R, Redmond AK, Secombes CJ, Macqueen DJ, Dooley H.

Dev Comp Immunol. 2017 Sep;74:125-135. doi: 10.1016/j.dci.2017.04.015. Epub 2017 Apr 19.


Evolution and Expression of Tissue Globins in Ray-Finned Fishes.

Gallagher MD, Macqueen DJ.

Genome Biol Evol. 2017 Jan 1;9(1):32-47. doi: 10.1093/gbe/evw266.


Divergent regulation of insulin-like growth factor binding protein genes in cultured Atlantic salmon myotubes under different models of catabolism and anabolism.

Garcia de la Serrana D, Fuentes EN, Martin SAM, Johnston IA, Macqueen DJ.

Gen Comp Endocrinol. 2017 Jun 1;247:53-65. doi: 10.1016/j.ygcen.2017.01.017. Epub 2017 Jan 19.


The complete salmonid IGF-IR gene repertoire and its transcriptional response to disease.

Alzaid A, Martin SAM, Macqueen DJ.

Sci Rep. 2016 Oct 17;6:34806. doi: 10.1038/srep34806.


Cross Talk Between Growth and Immunity: Coupling of the IGF Axis to Conserved Cytokine Pathways in Rainbow Trout.

Alzaid A, Castro R, Wang T, Secombes CJ, Boudinot P, Macqueen DJ, Martin SA.

Endocrinology. 2016 May;157(5):1942-55. doi: 10.1210/en.2015-2024. Epub 2016 Apr 1.


Molecular adaptation of ammonia monooxygenase during independent pH specialization in Thaumarchaeota.

Macqueen DJ, Gubry-Rangin C.

Mol Ecol. 2016 May;25(9):1986-99. doi: 10.1111/mec.13607. Epub 2016 Mar 31.


Corrigendum: Disparate developmental patterns of immune responses to bacterial and viral infections in fish.

Castro R, Jouneau L, Tacchi L, Macqueen DJ, Alzaid A, Secombes CJ, Martin SA, Boudinot P.

Sci Rep. 2016 Jan 27;6:18524. doi: 10.1038/srep18524. No abstract available.


Disparate developmental patterns of immune responses to bacterial and viral infections in fish.

Castro R, Jouneau L, Tacchi L, Macqueen DJ, Alzaid A, Secombes CJ, Martin SA, Boudinot P.

Sci Rep. 2015 Oct 21;5:15458. doi: 10.1038/srep15458. Erratum in: Sci Rep. 2016;6:18524.


Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota.

Gubry-Rangin C, Kratsch C, Williams TA, McHardy AC, Embley TM, Prosser JI, Macqueen DJ.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9370-5. doi: 10.1073/pnas.1419329112. Epub 2015 Jul 13.


The vertebrate muscle-specific RING finger protein family includes MuRF4--a novel, conserved E3-ubiquitin ligase.

Macqueen DJ, Fuentes EN, Valdés JA, Molina A, Martin SA.

FEBS Lett. 2014 Nov 28;588(23):4390-7. doi: 10.1016/j.febslet.2014.10.008. Epub 2014 Oct 18.


Cardiac myoglobin deficit has evolved repeatedly in teleost fishes.

Macqueen DJ, Garcia de la Serrana D, Johnston IA.

Biol Lett. 2014 Jun;10(6). pii: 20140225. doi: 10.1098/rsbl.2014.0225.


A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification.

Macqueen DJ, Johnston IA.

Proc Biol Sci. 2014 Jan 22;281(1778):20132881. doi: 10.1098/rspb.2013.2881. Print 2014 Mar 7.


Evolution of ancient functions in the vertebrate insulin-like growth factor system uncovered by study of duplicated salmonid fish genomes.

Macqueen DJ, Garcia de la Serrana D, Johnston IA.

Mol Biol Evol. 2013 May;30(5):1060-76. doi: 10.1093/molbev/mst017. Epub 2013 Jan 29.


Universal scaling rules predict evolutionary patterns of myogenesis in species with indeterminate growth.

Johnston IA, Kristjánsson BK, Paxton CG, Vieira VL, Macqueen DJ, Bell MA.

Proc Biol Sci. 2012 Jun 7;279(1736):2255-61. doi: 10.1098/rspb.2011.2536. Epub 2012 Jan 11.


The parallel evolution of dwarfism in Arctic charr is accompanied by adaptive divergence in mTOR-pathway gene expression.

Macqueen DJ, Kristjánsson BK, Paxton CG, Vieira VL, Johnston IA.

Mol Ecol. 2011 Aug;20(15):3167-84. doi: 10.1111/j.1365-294X.2011.05172.x. Epub 2011 Jun 29.


Growth and the regulation of myotomal muscle mass in teleost fish.

Johnston IA, Bower NI, Macqueen DJ.

J Exp Biol. 2011 May 15;214(Pt 10):1617-28. doi: 10.1242/jeb.038620. Review.


Positioning the expanded akirin gene family of Atlantic salmon within the transcriptional networks of myogenesis.

Macqueen DJ, Bower NI, Johnston IA.

Biochem Biophys Res Commun. 2010 Oct 1;400(4):599-605. doi: 10.1016/j.bbrc.2010.08.110. Epub 2010 Sep 8.


Salmonid genomes have a remarkably expanded akirin family, coexpressed with genes from conserved pathways governing skeletal muscle growth and catabolism.

Macqueen DJ, Kristjánsson BK, Johnston IA.

Physiol Genomics. 2010 Jun;42(1):134-48. doi: 10.1152/physiolgenomics.00045.2010. Epub 2010 Apr 13.


A newly classified vertebrate calpain protease, directly ancestral to CAPN1 and 2, episodically evolved a restricted physiological function in placental mammals.

Macqueen DJ, Delbridge ML, Manthri S, Johnston IA.

Mol Biol Evol. 2010 Aug;27(8):1886-902. doi: 10.1093/molbev/msq071. Epub 2010 Mar 11.


Characterisation of capn1, capn2-like, capn3 and capn11 genes in Atlantic halibut (Hippoglossus hippoglossus L.): Transcriptional regulation across tissues and in skeletal muscle at distinct nutritional states.

Macqueen DJ, Meischke L, Manthri S, Anwar A, Solberg C, Johnston IA.

Gene. 2010 Mar 15;453(1-2):45-58. doi: 10.1016/j.gene.2010.01.002. Epub 2010 Jan 20.


Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genome-wide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes.

Johnston IA, Lee HT, Macqueen DJ, Paranthaman K, Kawashima C, Anwar A, Kinghorn JR, Dalmay T.

J Exp Biol. 2009 Jun;212(Pt 12):1781-93. doi: 10.1242/jeb.029918.


Evolution of the multifaceted eukaryotic akirin gene family.

Macqueen DJ, Johnston IA.

BMC Evol Biol. 2009 Feb 6;9:34. doi: 10.1186/1471-2148-9-34.


Temperature until the 'eyed stage' of embryogenesis programmes the growth trajectory and muscle phenotype of adult Atlantic salmon.

Macqueen DJ, Robb DH, Olsen T, Melstveit L, Paxton CG, Johnston IA.

Biol Lett. 2008 Jun 23;4(3):294-8. doi: 10.1098/rsbl.2007.0620.


Genomic, evolutionary, and expression analyses of cee, an ancient gene involved in normal growth and development.

Fernandes JM, Macqueen DJ, Lee HT, Johnston IA.

Genomics. 2008 Apr;91(4):315-25. doi: 10.1016/j.ygeno.2007.10.017. Epub 2008 Jan 31.


Evolution of follistatin in teleosts revealed through phylogenetic, genomic and expression analyses.

Macqueen DJ, Johnston IA.

Dev Genes Evol. 2008 Jan;218(1):1-14. Epub 2007 Dec 11.


A novel salmonid myoD gene is distinctly regulated during development and probably arose by duplication after the genome tetraploidization.

Macqueen DJ, Johnston IA.

FEBS Lett. 2006 Sep 18;580(21):4996-5002. Epub 2006 Aug 17. Erratum in: FEBS Lett. 2006 Nov 13;580(26):6286-7.

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