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Items: 28

1.

Carbon dioxide dynamics in a lake and a reservoir on a tropical island (Bali, Indonesia).

Macklin PA, Suryaputra IGNA, Maher DT, Santos IR.

PLoS One. 2018 Jun 11;13(6):e0198678. doi: 10.1371/journal.pone.0198678. eCollection 2018. Erratum in: PLoS One. 2018 Jul 12;13(7):e0200948.

2.

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.

Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P.

PLoS Comput Biol. 2018 Feb 23;14(2):e1005991. doi: 10.1371/journal.pcbi.1005991. eCollection 2018 Feb.

3.

When Seeing Isn't Believing: How Math Can Guide Our Interpretation of Measurements and Experiments.

Macklin P.

Cell Syst. 2017 Aug 23;5(2):92-94. doi: 10.1016/j.cels.2017.08.005.

PMID:
28837815
4.

Hypoxia and HIF pathway in cancer and the placenta.

Macklin PS, McAuliffe J, Pugh CW, Yamamoto A.

Placenta. 2017 Aug;56:8-13. doi: 10.1016/j.placenta.2017.03.010. Epub 2017 Mar 16. Review.

PMID:
28330647
5.

A systematic review of the use of rituximab for the treatment of antibody-mediated renal transplant rejection.

Macklin PS, Morris PJ, Knight SR.

Transplant Rev (Orlando). 2017 Apr;31(2):87-95. doi: 10.1016/j.trre.2017.01.002. Epub 2017 Jan 24. Review.

PMID:
28187998
6.

Progress Towards Computational 3-D Multicellular Systems Biology.

Macklin P, Frieboes HB, Sparks JL, Ghaffarizadeh A, Friedman SH, Juarez EF, Jonckheere E, Mumenthaler SM.

Adv Exp Med Biol. 2016;936:225-246. Review.

PMID:
27739051
7.

Quantifying differences in cell line population dynamics using CellPD.

Juarez EF, Lau R, Friedman SH, Ghaffarizadeh A, Jonckheere E, Agus DB, Mumenthaler SM, Macklin P.

BMC Syst Biol. 2016 Sep 21;10(1):92.

8.

Agent-Based Modeling of Cancer Stem Cell Driven Solid Tumor Growth.

Poleszczuk J, Macklin P, Enderling H.

Methods Mol Biol. 2016;1516:335-346. doi: 10.1007/7651_2016_346.

PMID:
27044046
9.

AN EVOLUTIONARY MODEL OF TUMOR CELL KINETICS AND THE EMERGENCE OF MOLECULAR HETEROGENEITY DRIVING GOMPERTZIAN GROWTH.

West J, Hasnain Z, Macklin P, Newton PK.

SIAM Rev Soc Ind Appl Math. 2016;58(4):716-736. doi: 10.1137/15M1044825. Epub 2016 Nov 3.

10.

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.

Ghaffarizadeh A, Friedman SH, Macklin P.

Bioinformatics. 2016 Apr 15;32(8):1256-8. doi: 10.1093/bioinformatics/btv730. Epub 2015 Dec 12.

11.

A Case of QT Prolongation and Torsades de Pointes Caused by Ibogaine Toxicity.

Hildyard C, Macklin P, Prendergast B, Bashir Y.

J Emerg Med. 2016 Feb;50(2):e83-7. doi: 10.1016/j.jemermed.2015.06.051. Epub 2015 Aug 29. No abstract available.

PMID:
26329675
12.

A systematic review of the use of rituximab as induction therapy in renal transplantation.

Macklin PS, Morris PJ, Knight SR.

Transplant Rev (Orlando). 2015 Apr;29(2):103-8. doi: 10.1016/j.trre.2014.12.001. Epub 2014 Dec 5. Review.

PMID:
25555541
13.

A systematic review of the use of rituximab for desensitization in renal transplantation.

Macklin PS, Morris PJ, Knight SR.

Transplantation. 2014 Oct 27;98(8):794-805. doi: 10.1097/TP.0000000000000362. Review.

PMID:
25321163
14.

Abdominopelvic actinomycosis mimicking disseminated peritoneal carcinomatosis.

Hildyard CA, Gallacher NJ, Macklin PS.

BMJ Case Rep. 2013 Nov 21;2013. pii: bcr2013201128. doi: 10.1136/bcr-2013-201128.

15.

The Need for Integrative Computational Oncology: An Illustrated Example through MMP-Mediated Tissue Degradation.

Mumenthaler SM, D'Antonio G, Preziosi L, Macklin P.

Front Oncol. 2013 Jul 26;3:194. doi: 10.3389/fonc.2013.00194. eCollection 2013.

16.

An agent-based model for elasto-plastic mechanical interactions between cells, basement membrane and extracellular matrix.

D'Antonio G, Macklin P, Preziosi L.

Math Biosci Eng. 2013 Feb;10(1):75-101. doi: 10.3934/mbe.2013.10.75.

PMID:
23311363
17.

Surgical management of emergency and elective giant paraesophageal hiatus hernias.

Shaikh I, Macklin P, Driscoll P, de Beaux A, Couper G, Paterson-Brown S.

J Laparoendosc Adv Surg Tech A. 2013 Feb;23(2):100-5. doi: 10.1089/lap.2012.0199. Epub 2012 Dec 31.

PMID:
23276250
18.

Improved patient-specific calibration for agent-based cancer modeling.

Hyun AZ, Macklin P.

J Theor Biol. 2013 Jan 21;317:422-4. doi: 10.1016/j.jtbi.2012.10.017. Epub 2012 Oct 22. No abstract available.

PMID:
23084996
19.

Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): from microscopic measurements to macroscopic predictions of clinical progression.

Macklin P, Edgerton ME, Thompson AM, Cristini V.

J Theor Biol. 2012 May 21;301:122-40. doi: 10.1016/j.jtbi.2012.02.002. Epub 2012 Feb 9.

20.

A novel, patient-specific mathematical pathology approach for assessment of surgical volume: application to ductal carcinoma in situ of the breast.

Edgerton ME, Chuang YL, Macklin P, Yang W, Bearer EL, Cristini V.

Anal Cell Pathol (Amst). 2011;34(5):247-63. doi: 10.3233/ACP-2011-0019.

21.

Integrative physical oncology.

Hatzikirou H, Chauviere A, Bauer AL, Leier A, Lewis MT, Macklin P, Marquez-Lago TT, Bearer EL, Cristini V.

Wiley Interdiscip Rev Syst Biol Med. 2012 Jan-Feb;4(1):1-14. doi: 10.1002/wsbm.158. Epub 2011 Aug 18. Review.

22.

Multiscale cancer modeling.

Deisboeck TS, Wang Z, Macklin P, Cristini V.

Annu Rev Biomed Eng. 2011 Aug 15;13:127-55. doi: 10.1146/annurev-bioeng-071910-124729. Review.

23.

Nonlinear modelling of cancer: bridging the gap between cells and tumours.

Lowengrub JS, Frieboes HB, Jin F, Chuang YL, Li X, Macklin P, Wise SM, Cristini V.

Nonlinearity. 2010;23(1):R1-R9.

24.

Multiscale modelling and nonlinear simulation of vascular tumour growth.

Macklin P, McDougall S, Anderson AR, Chaplain MA, Cristini V, Lowengrub J.

J Math Biol. 2009 Apr;58(4-5):765-98. doi: 10.1007/s00285-008-0216-9. Epub 2008 Sep 10.

25.
26.

Computer simulation of glioma growth and morphology.

Frieboes HB, Lowengrub JS, Wise S, Zheng X, Macklin P, Bearer EL, Cristini V.

Neuroimage. 2007;37 Suppl 1:S59-70. Epub 2007 Mar 23.

27.

Nonlinear simulation of the effect of microenvironment on tumor growth.

Macklin P, Lowengrub J.

J Theor Biol. 2007 Apr 21;245(4):677-704. Epub 2006 Dec 12. Erratum in: J Theor Biol. 2007 Aug 7;247(3):581.

PMID:
17239903
28.

Candidate number 1: instant runoff voting.

Richie R, Bouricius T, Macklin P.

Science. 2001 Oct 12;294(5541):303-6. No abstract available.

PMID:
11599536

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