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Items: 39

1.

Reply to Milan Hora's Letter to the Editor re: Philip S. Macklin, Mark E. Sullivan, Charles R. Tapping, et al. Tumour Seeding in the Tract of Percutaneous Renal Tumour Biopsy: A Report on Seven Cases from a UK Tertiary Referral Centre. Eur Urol 2019;75:861-7.

Macklin PS, Sullivan ME, Tapping CR, Webster GM, Roberts ISD, Verrill CL, Browning L.

Eur Urol. 2019 Jun 26. pii: S0302-2838(19)30505-6. doi: 10.1016/j.eururo.2019.06.020. [Epub ahead of print] No abstract available.

PMID:
31255422
2.

Systemic silencing of PHD2 causes reversible immune regulatory dysfunction.

Yamamoto A, Hester J, Macklin PS, Kawai K, Uchiyama M, Biggs D, Bishop T, Bull K, Cheng X, Cawthorne E, Coleman ML, Crockford TL, Davies B, Dow LE, Goldin R, Kranc K, Kudo H, Lawson H, McAuliffe J, Milward K, Scudamore CL, Soilleux E, Issa F, Ratcliffe PJ, Pugh CW.

J Clin Invest. 2019 Jun 4;130. pii: 124099. doi: 10.1172/JCI124099.

3.

Artificial intelligence in digital pathology: a roadmap to routine use in clinical practice.

Colling R, Pitman H, Oien K, Rajpoot N, Macklin P; CM-Path AI in Histopathology Working Group, Snead D, Sackville T, Verrill C.

J Pathol. 2019 May 29. doi: 10.1002/path.5310. [Epub ahead of print]

PMID:
31144302
4.

The 2019 mathematical oncology roadmap.

Rockne RC, Hawkins-Daarud A, Swanson KR, Sluka JP, Glazier JA, Macklin P, Hormuth DA, Jarrett AM, Lima EABF, Tinsley Oden J, Biros G, Yankeelov TE, Curtius K, Al Bakir I, Wodarz D, Komarova N, Aparicio L, Bordyuh M, Rabadan R, Finley SD, Enderling H, Caudell J, Moros EG, Anderson ARA, Gatenby RA, Kaznatcheev A, Jeavons P, Krishnan N, Pelesko J, Wadhwa RR, Yoon N, Nichol D, Marusyk A, Hinczewski M, Scott JG.

Phys Biol. 2019 Jun 19;16(4):041005. doi: 10.1088/1478-3975/ab1a09.

PMID:
30991381
5.

Reply to Maxine G. Tran, Ravi Barod, and Axel Bex's Letter to the Editor re: Philip S. Macklin, Mark E. Sullivan, Charles R. Tapping, et al. Tumour Seeding in the Tract of Percutaneous Renal Tumour Biopsy: A Report on Seven Cases from a UK Tertiary Referral Centre. Eur Urol 2019;75:861-7.

Macklin PS, Sullivan ME, Tapping CR, Webster GM, Roberts ISD, Verrill CL, Browning L.

Eur Urol. 2019 Jun;75(6):e177-e178. doi: 10.1016/j.eururo.2019.02.029. Epub 2019 Mar 1. No abstract available.

PMID:
30827695
6.

A Review of Cell-Based Computational Modeling in Cancer Biology.

Metzcar J, Wang Y, Heiland R, Macklin P.

JCO Clin Cancer Inform. 2019 Feb;3:1-13. doi: 10.1200/CCI.18.00069.

7.

Tumour Seeding in the Tract of Percutaneous Renal Tumour Biopsy: A Report on Seven Cases from a UK Tertiary Referral Centre.

Macklin PS, Sullivan ME, Tapping CR, Cranston DW, Webster GM, Roberts ISD, Verrill CL, Browning L.

Eur Urol. 2019 May;75(5):861-867. doi: 10.1016/j.eururo.2018.12.011. Epub 2018 Dec 24.

PMID:
30591353
8.

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.

Ozik J, Collier N, Wozniak JM, Macal C, Cockrell C, Friedman SH, Ghaffarizadeh A, Heiland R, An G, Macklin P.

BMC Bioinformatics. 2018 Dec 21;19(Suppl 18):483. doi: 10.1186/s12859-018-2510-x.

9.

Barriers to the release of human tissue for clinical trials research in the UK: a national survey of cellular pathology laboratories on behalf of the National Cancer Research Institute's Cellular Molecular Pathology (CM-Path) initiative.

Macklin PS, Hall A, Lee J, Hair J, Speirs V, Thomas GJ, Oien KA, Verrill C.

J Clin Pathol. 2019 Jan;72(1):52-57. doi: 10.1136/jclinpath-2018-205476. Epub 2018 Oct 1.

PMID:
30275096
10.

Correlating nuclear morphometric patterns with estrogen receptor status in breast cancer pathologic specimens.

Rawat RR, Ruderman D, Macklin P, Rimm DL, Agus DB.

NPJ Breast Cancer. 2018 Sep 4;4:32. doi: 10.1038/s41523-018-0084-4. eCollection 2018.

11.

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.

Letort G, Montagud A, Stoll G, Heiland R, Barillot E, Macklin P, Zinovyev A, Calzone L.

Bioinformatics. 2019 Apr 1;35(7):1188-1196. doi: 10.1093/bioinformatics/bty766.

12.

Carbon dioxide dynamics in a lake and a reservoir on a tropical island (Bali, Indonesia).

Macklin PA, Suryaputra IGNA, Maher DT, Santos IR.

PLoS One. 2018 Jun 11;13(6):e0198678. doi: 10.1371/journal.pone.0198678. eCollection 2018. Erratum in: PLoS One. 2018 Jul 12;13(7):e0200948.

13.

PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.

Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P.

PLoS Comput Biol. 2018 Feb 23;14(2):e1005991. doi: 10.1371/journal.pcbi.1005991. eCollection 2018 Feb.

14.

When Seeing Isn't Believing: How Math Can Guide Our Interpretation of Measurements and Experiments.

Macklin P.

Cell Syst. 2017 Aug 23;5(2):92-94. doi: 10.1016/j.cels.2017.08.005.

15.

Hypoxia and HIF pathway in cancer and the placenta.

Macklin PS, McAuliffe J, Pugh CW, Yamamoto A.

Placenta. 2017 Aug;56:8-13. doi: 10.1016/j.placenta.2017.03.010. Epub 2017 Mar 16. Review.

PMID:
28330647
16.

A systematic review of the use of rituximab for the treatment of antibody-mediated renal transplant rejection.

Macklin PS, Morris PJ, Knight SR.

Transplant Rev (Orlando). 2017 Apr;31(2):87-95. doi: 10.1016/j.trre.2017.01.002. Epub 2017 Jan 24. Review.

PMID:
28187998
17.

Progress Towards Computational 3-D Multicellular Systems Biology.

Macklin P, Frieboes HB, Sparks JL, Ghaffarizadeh A, Friedman SH, Juarez EF, Jonckheere E, Mumenthaler SM.

Adv Exp Med Biol. 2016;936:225-246. Review.

18.

Quantifying differences in cell line population dynamics using CellPD.

Juarez EF, Lau R, Friedman SH, Ghaffarizadeh A, Jonckheere E, Agus DB, Mumenthaler SM, Macklin P.

BMC Syst Biol. 2016 Sep 21;10(1):92.

19.

Agent-Based Modeling of Cancer Stem Cell Driven Solid Tumor Growth.

Poleszczuk J, Macklin P, Enderling H.

Methods Mol Biol. 2016;1516:335-346. doi: 10.1007/7651_2016_346.

20.

AN EVOLUTIONARY MODEL OF TUMOR CELL KINETICS AND THE EMERGENCE OF MOLECULAR HETEROGENEITY DRIVING GOMPERTZIAN GROWTH.

West J, Hasnain Z, Macklin P, Newton PK.

SIAM Rev Soc Ind Appl Math. 2016;58(4):716-736. doi: 10.1137/15M1044825. Epub 2016 Nov 3.

21.

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.

Ghaffarizadeh A, Friedman SH, Macklin P.

Bioinformatics. 2016 Apr 15;32(8):1256-8. doi: 10.1093/bioinformatics/btv730. Epub 2015 Dec 12.

22.

A Case of QT Prolongation and Torsades de Pointes Caused by Ibogaine Toxicity.

Hildyard C, Macklin P, Prendergast B, Bashir Y.

J Emerg Med. 2016 Feb;50(2):e83-7. doi: 10.1016/j.jemermed.2015.06.051. Epub 2015 Aug 29. No abstract available.

PMID:
26329675
23.

A systematic review of the use of rituximab as induction therapy in renal transplantation.

Macklin PS, Morris PJ, Knight SR.

Transplant Rev (Orlando). 2015 Apr;29(2):103-8. doi: 10.1016/j.trre.2014.12.001. Epub 2014 Dec 5. Review.

PMID:
25555541
24.

A systematic review of the use of rituximab for desensitization in renal transplantation.

Macklin PS, Morris PJ, Knight SR.

Transplantation. 2014 Oct 27;98(8):794-805. doi: 10.1097/TP.0000000000000362. Review.

PMID:
25321163
25.

Abdominopelvic actinomycosis mimicking disseminated peritoneal carcinomatosis.

Hildyard CA, Gallacher NJ, Macklin PS.

BMJ Case Rep. 2013 Nov 21;2013. pii: bcr2013201128. doi: 10.1136/bcr-2013-201128.

26.

The Need for Integrative Computational Oncology: An Illustrated Example through MMP-Mediated Tissue Degradation.

Mumenthaler SM, D'Antonio G, Preziosi L, Macklin P.

Front Oncol. 2013 Jul 26;3:194. doi: 10.3389/fonc.2013.00194. eCollection 2013.

27.

An agent-based model for elasto-plastic mechanical interactions between cells, basement membrane and extracellular matrix.

D'Antonio G, Macklin P, Preziosi L.

Math Biosci Eng. 2013 Feb;10(1):75-101. doi: 10.3934/mbe.2013.10.75.

28.

Surgical management of emergency and elective giant paraesophageal hiatus hernias.

Shaikh I, Macklin P, Driscoll P, de Beaux A, Couper G, Paterson-Brown S.

J Laparoendosc Adv Surg Tech A. 2013 Feb;23(2):100-5. doi: 10.1089/lap.2012.0199. Epub 2012 Dec 31.

PMID:
23276250
29.

Improved patient-specific calibration for agent-based cancer modeling.

Hyun AZ, Macklin P.

J Theor Biol. 2013 Jan 21;317:422-4. doi: 10.1016/j.jtbi.2012.10.017. Epub 2012 Oct 22. No abstract available.

30.

Patient-calibrated agent-based modelling of ductal carcinoma in situ (DCIS): from microscopic measurements to macroscopic predictions of clinical progression.

Macklin P, Edgerton ME, Thompson AM, Cristini V.

J Theor Biol. 2012 May 21;301:122-40. doi: 10.1016/j.jtbi.2012.02.002. Epub 2012 Feb 9.

31.

A novel, patient-specific mathematical pathology approach for assessment of surgical volume: application to ductal carcinoma in situ of the breast.

Edgerton ME, Chuang YL, Macklin P, Yang W, Bearer EL, Cristini V.

Anal Cell Pathol (Amst). 2011;34(5):247-63. doi: 10.3233/ACP-2011-0019.

32.

Integrative physical oncology.

Hatzikirou H, Chauviere A, Bauer AL, Leier A, Lewis MT, Macklin P, Marquez-Lago TT, Bearer EL, Cristini V.

Wiley Interdiscip Rev Syst Biol Med. 2012 Jan-Feb;4(1):1-14. doi: 10.1002/wsbm.158. Epub 2011 Aug 18. Review.

33.

Multiscale cancer modeling.

Deisboeck TS, Wang Z, Macklin P, Cristini V.

Annu Rev Biomed Eng. 2011 Aug 15;13:127-55. doi: 10.1146/annurev-bioeng-071910-124729. Review.

34.

Nonlinear modelling of cancer: bridging the gap between cells and tumours.

Lowengrub JS, Frieboes HB, Jin F, Chuang YL, Li X, Macklin P, Wise SM, Cristini V.

Nonlinearity. 2010;23(1):R1-R9.

35.

Multiscale modelling and nonlinear simulation of vascular tumour growth.

Macklin P, McDougall S, Anderson AR, Chaplain MA, Cristini V, Lowengrub J.

J Math Biol. 2009 Apr;58(4-5):765-98. doi: 10.1007/s00285-008-0216-9. Epub 2008 Sep 10.

36.
37.

Computer simulation of glioma growth and morphology.

Frieboes HB, Lowengrub JS, Wise S, Zheng X, Macklin P, Bearer EL, Cristini V.

Neuroimage. 2007;37 Suppl 1:S59-70. Epub 2007 Mar 23.

38.

Nonlinear simulation of the effect of microenvironment on tumor growth.

Macklin P, Lowengrub J.

J Theor Biol. 2007 Apr 21;245(4):677-704. Epub 2006 Dec 12. Erratum in: J Theor Biol. 2007 Aug 7;247(3):581.

PMID:
17239903
39.

Candidate number 1: instant runoff voting.

Richie R, Bouricius T, Macklin P.

Science. 2001 Oct 12;294(5541):303-6. No abstract available.

PMID:
11599536

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