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Items: 5

1.

Incentivising use of structured language in biological descriptions: Author-driven phenotype data and ontology production.

Cui H, Macklin JA, Sachs J, Reznicek A, Starr J, Ford B, Penev L, Chen HL.

Biodivers Data J. 2018 Nov 7;(6):e29616. doi: 10.3897/BDJ.6.e29616. eCollection 2018.

2.

Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building.

Cui H, Xu D, Chong SS, Ramirez M, Rodenhausen T, Macklin JA, Ludäscher B, Morris RA, Soto EM, Koch NM.

BMC Bioinformatics. 2016 Nov 17;17(1):471.

3.

OTO: Ontology Term Organizer.

Huang F, Macklin JA, Cui H, Cole HA, Endara L.

BMC Bioinformatics. 2015 Feb 15;16:47. doi: 10.1186/s12859-015-0488-1.

4.

Finding our way through phenotypes.

Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.

PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033. eCollection 2015 Jan.

5.

Semantic annotation of mutable data.

Morris RA, Dou L, Hanken J, Kelly M, Lowery DB, Ludäscher B, Macklin JA, Morris PJ.

PLoS One. 2013 Nov 4;8(11):e76093. doi: 10.1371/journal.pone.0076093. eCollection 2013.

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