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Items: 24

1.

The influence of different types of translational inaccuracies on the genetic code structure.

BłaŻej P, Wnetrzak M, Mackiewicz D, Mackiewicz P.

BMC Bioinformatics. 2019 Mar 6;20(1):114. doi: 10.1186/s12859-019-2661-4.

2.

Many alternative and theoretical genetic codes are more robust to amino acid replacements than the standard genetic code.

Błażej P, Wnętrzak M, Mackiewicz D, Gagat P, Mackiewicz P.

J Theor Biol. 2019 Mar 7;464:21-32. doi: 10.1016/j.jtbi.2018.12.030. Epub 2018 Dec 21.

PMID:
30579955
3.

The optimality of the standard genetic code assessed by an eight-objective evolutionary algorithm.

Wnętrzak M, Błażej P, Mackiewicz D, Mackiewicz P.

BMC Evol Biol. 2018 Dec 13;18(1):192. doi: 10.1186/s12862-018-1304-0.

4.

Correction: Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm.

Błażej P, Wnętrzak M, Mackiewicz D, Mackiewicz P.

PLoS One. 2018 Oct 4;13(10):e0205450. doi: 10.1371/journal.pone.0205450. eCollection 2018.

5.

Optimization of the standard genetic code according to three codon positions using an evolutionary algorithm.

Błażej P, Wnętrzak M, Mackiewicz D, Mackiewicz P.

PLoS One. 2018 Aug 9;13(8):e0201715. doi: 10.1371/journal.pone.0201715. eCollection 2018. Erratum in: PLoS One. 2018 Oct 4;13(10):e0205450.

6.

Role of recombination and faithfulness to partner in sex chromosome degeneration.

Mackiewicz D, Posacki P, Burdukiewicz M, Błażej P.

Sci Rep. 2018 Jun 12;8(1):8978. doi: 10.1038/s41598-018-27219-1.

7.

Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group.

Mackiewicz P, Moska M, Wierzbicki H, Gagat P, Mackiewicz D.

PLoS One. 2017 Jun 26;12(6):e0179760. doi: 10.1371/journal.pone.0179760. eCollection 2017.

8.

Optimization of amino acid replacement costs by mutational pressure in bacterial genomes.

Błażej P, Mackiewicz D, Grabińska M, Wnętrzak M, Mackiewicz P.

Sci Rep. 2017 Apr 21;7(1):1061. doi: 10.1038/s41598-017-01130-7.

9.

The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons.

Błażej P, Mackiewicz D, Wnętrzak M, Mackiewicz P.

G3 (Bethesda). 2017 Mar 10;7(3):967-981. doi: 10.1534/g3.116.038125.

10.

Distribution of recombination hotspots in the human genome--a comparison of computer simulations with real data.

Mackiewicz D, de Oliveira PM, Moss de Oliveira S, Cebrat S.

PLoS One. 2013 Jun 11;8(6):e65272. doi: 10.1371/journal.pone.0065272. Print 2013.

11.

Total mercury in Yellow Knights (Tricholoma equestre) mushrooms and beneath soils.

Maćkiewicz D, Falandysz J.

Bull Environ Contam Toxicol. 2012 Oct;89(4):755-8. doi: 10.1007/s00128-012-0757-x. Epub 2012 Aug 7.

12.

Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length.

Mackiewicz D, Zawierta M, Waga W, Cebrat S.

J Theor Biol. 2010 Nov 21;267(2):186-92. doi: 10.1016/j.jtbi.2010.08.022. Epub 2010 Aug 20.

PMID:
20728453
13.

Sympatric speciation as intrinsic property of the expanding population.

Waga W, Mackiewicz D, Zawierta M, Cebrat S.

Theory Biosci. 2007 Oct;126(2-3):53-9. Epub 2007 Jul 25.

PMID:
18087758
14.

The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms.

Kiraga J, Mackiewicz P, Mackiewicz D, Kowalczuk M, Biecek P, Polak N, Smolarczyk K, Dudek MR, Cebrat S.

BMC Genomics. 2007 Jun 12;8:163.

15.

Representation of mutation pressure and selection pressure by PAM matrices.

Nowicka A, Mackiewicz P, Dudkiewicz M, Mackiewicz D, Kowalczuk M, Banaszak J, Cebrat S, Dudek MR.

Appl Bioinformatics. 2004;3(1):31-9.

PMID:
16323964
16.

Higher mutation rate helps to rescue genes from the elimination by selection.

Dudkiewicz M, Mackiewicz P, Mackiewicz D, Kowalczuk M, Nowicka A, Polak N, Smolarczyk K, Banaszak J, Dudek MR, Cebrat S.

Biosystems. 2005 May;80(2):193-9. Epub 2004 Dec 30.

PMID:
15823418
17.

Rearrangements between differently replicating DNA strands in asymmetric bacterial genomes.

Mackiewicz D, Mackiewicz P, Kowalczuk M, Dudkiewicz M, Dudek MR, Cebrat S.

Acta Microbiol Pol. 2003;52(3):245-60.

PMID:
14743977
18.

High divergence rate of sequences located on different DNA strands in closely related bacterial genomes.

Mackiewicz P, Mackiewicz D, Kowalczuk M, Dudkiewicz M, Dudek MR, Cebrat S.

J Appl Genet. 2003;44(4):561-84.

PMID:
14617839
19.

DNA asymmetry and the replicational mutational pressure.

Kowalczuk M, Mackiewicz P, Mackiewicz D, Nowicka A, Dudkiewicz M, Dudek MR, Cebrat S.

J Appl Genet. 2001;42(4):553-77.

PMID:
14564030
20.

How many protein-coding genes are there in the Saccharomyces cerevisiae genome?

Mackiewicz P, Kowalczuk M, Mackiewicz D, Nowicka A, Dudkiewicz M, Laszkiewicz A, Dudek MR, Cebrat S.

Yeast. 2002 May;19(7):619-29.

21.

High correlation between the turnover of nucleotides under mutational pressure and the DNA composition.

Kowalczuk M, Mackiewicz P, Mackiewicz D, Nowicka A, Dudkiewicz M, Dudek MR, Cebrat S.

BMC Evol Biol. 2001;1:13. Epub 2001 Dec 17.

22.

Flip-flop around the origin and terminus of replication in prokaryotic genomes.

Mackiewicz P, Mackiewicz D, Kowalczuk M, Cebrat S.

Genome Biol. 2001;2(12):INTERACTIONS1004. Epub 2001 Nov 15. No abstract available.

23.

The differential killing of genes by inversions in prokaryotic genomes.

Mackiewicz P, Mackiewicz D, Gierlik A, Kowalczuk M, Nowicka A, Dudkiewicz M, Dudek MR, Cebrat S.

J Mol Evol. 2001 Dec;53(6):615-21.

PMID:
11677621
24.

Herbaceous Weeds Are Not Ecologically Important Reservoirs of Erwinia tracheiphila.

de Mackiewicz D, Gildow FE, Blua M, Fleischer SJ, Lukezic FL.

Plant Dis. 1998 May;82(5):521-529. doi: 10.1094/PDIS.1998.82.5.521.

PMID:
30856982

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