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Items: 19

1.

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data.

Berens P, Freeman J, Deneux T, Chenkov N, McColgan T, Speiser A, Macke JH, Turaga SC, Mineault P, Rupprecht P, Gerhard S, Friedrich RW, Friedrich J, Paninski L, Pachitariu M, Harris KD, Bolte B, Machado TA, Ringach D, Stone J, Rogerson LE, Sofroniew NJ, Reimer J, Froudarakis E, Euler T, Román Rosón M, Theis L, Tolias AS, Bethge M.

PLoS Comput Biol. 2018 May 21;14(5):e1006157. doi: 10.1371/journal.pcbi.1006157. eCollection 2018 May.

2.

Accuracy of Rats in Discriminating Visual Objects Is Explained by the Complexity of Their Perceptual Strategy.

Djurdjevic V, Ansuini A, Bertolini D, Macke JH, Zoccolan D.

Curr Biol. 2018 Apr 2;28(7):1005-1015.e5. doi: 10.1016/j.cub.2018.02.037. Epub 2018 Mar 15.

3.

Can Serial Dependencies in Choices and Neural Activity Explain Choice Probabilities?

Lueckmann JM, Macke JH, Nienborg H.

J Neurosci. 2018 Apr 4;38(14):3495-3506. doi: 10.1523/JNEUROSCI.2225-17.2018. Epub 2018 Feb 12.

4.

Signatures of criticality arise from random subsampling in simple population models.

Nonnenmacher M, Behrens C, Berens P, Bethge M, Macke JH.

PLoS Comput Biol. 2017 Oct 3;13(10):e1005718. doi: 10.1371/journal.pcbi.1005718. eCollection 2017 Oct. Erratum in: PLoS Comput Biol. 2017 Dec 6;13(12 ):e1005886.

5.

Painfree and accurate Bayesian estimation of psychometric functions for (potentially) overdispersed data.

Schütt HH, Harmeling S, Macke JH, Wichmann FA.

Vision Res. 2016 May;122:105-123. doi: 10.1016/j.visres.2016.02.002. Epub 2016 May 2.

6.

Neural population coding: combining insights from microscopic and mass signals.

Panzeri S, Macke JH, Gross J, Kayser C.

Trends Cogn Sci. 2015 Mar;19(3):162-72. doi: 10.1016/j.tics.2015.01.002. Epub 2015 Feb 7. Review.

7.

Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression.

Küffner R, Zach N, Norel R, Hawe J, Schoenfeld D, Wang L, Li G, Fang L, Mackey L, Hardiman O, Cudkowicz M, Sherman A, Ertaylan G, Grosse-Wentrup M, Hothorn T, van Ligtenberg J, Macke JH, Meyer T, Schölkopf B, Tran L, Vaughan R, Stolovitzky G, Leitner ML.

Nat Biotechnol. 2015 Jan;33(1):51-7. doi: 10.1038/nbt.3051. Epub 2014 Nov 2.

PMID:
25362243
8.

Quantifying the effect of intertrial dependence on perceptual decisions.

Fründ I, Wichmann FA, Macke JH.

J Vis. 2014 Jun 18;14(7). pii: 9. doi: 10.1167/14.7.9.

PMID:
24944238
9.

Temporal jitter of the BOLD signal reveals a reliable initial dip and improved spatial resolution.

Watanabe M, Bartels A, Macke JH, Murayama Y, Logothetis NK.

Curr Biol. 2013 Nov 4;23(21):2146-50. doi: 10.1016/j.cub.2013.08.057. Epub 2013 Oct 17.

10.

Inferring decoding strategies from choice probabilities in the presence of correlated variability.

Haefner RM, Gerwinn S, Macke JH, Bethge M.

Nat Neurosci. 2013 Feb;16(2):235-42. doi: 10.1038/nn.3309. Epub 2013 Jan 13.

PMID:
23313912
11.

Learning stable, regularised latent models of neural population dynamics.

Buesing L, Macke JH, Sahani M.

Network. 2012;23(1-2):24-47. doi: 10.3109/0954898X.2012.677095.

PMID:
22663075
12.

Common input explains higher-order correlations and entropy in a simple model of neural population activity.

Macke JH, Opper M, Bethge M.

Phys Rev Lett. 2011 May 20;106(20):208102. Epub 2011 May 17.

PMID:
21668265
13.

Reconstructing stimuli from the spike times of leaky integrate and fire neurons.

Gerwinn S, Macke JH, Bethge M.

Front Neurosci. 2011 Feb 23;5:1. doi: 10.3389/fnins.2011.00001. eCollection 2011.

14.

Modeling Population Spike Trains with Specified Time-Varying Spike Rates, Trial-to-Trial Variability, and Pairwise Signal and Noise Correlations.

Lyamzin DR, Macke JH, Lesica NA.

Front Comput Neurosci. 2010 Nov 15;4:144. doi: 10.3389/fncom.2010.00144. eCollection 2010.

15.
16.

Bayesian inference for generalized linear models for spiking neurons.

Gerwinn S, Macke JH, Bethge M.

Front Comput Neurosci. 2010 May 28;4:12. doi: 10.3389/fncom.2010.00012. eCollection 2010.

17.

Gaussian process methods for estimating cortical maps.

Macke JH, Gerwinn S, White LE, Kaschube M, Bethge M.

Neuroimage. 2011 May 15;56(2):570-81. doi: 10.1016/j.neuroimage.2010.04.272. Epub 2010 May 15.

PMID:
20472075
18.

Generating spike trains with specified correlation coefficients.

Macke JH, Berens P, Ecker AS, Tolias AS, Bethge M.

Neural Comput. 2009 Feb;21(2):397-423. doi: 10.1162/neco.2008.02-08-713.

PMID:
19196233
19.

Contour-propagation algorithms for semi-automated reconstruction of neural processes.

Macke JH, Maack N, Gupta R, Denk W, Schölkopf B, Borst A.

J Neurosci Methods. 2008 Jan 30;167(2):349-57. Epub 2007 Aug 10.

PMID:
17870180

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