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Items: 1 to 50 of 62

1.

Quality control project of NGS HLA genotyping for the 17th International HLA and Immunogenetics Workshop.

Osoegawa K, Vayntrub TA, Wenda S, De Santis D, Barsakis K, Ivanova M, Hsu S, Barone J, Holdsworth R, Diviney M, Askar M, Willis A, Railton D, Laflin S, Gendzekhadze K, Oki A, Sacchi N, Mazzocco M, Andreani M, Ameen R, Stavropoulos-Giokas C, Dinou A, Torres M, Dos Santos Francisco R, Serra-Pages C, Goodridge D, Balladares S, Bettinotti MP, Iglehart B, Kashi Z, Martin R, Saw CL, Ragoussis J, Downing J, Navarrete C, Chong W, Saito K, Petrek M, Tokic S, Padros K, Beatriz Rodriguez M, Zakharova V, Shragina O, Marino SR, Brown NK, Shiina T, Suzuki S, Spierings E, Zhang Q, Yin Y, Morris GP, Hernandez A, Ruiz P, Khor SS, Tokunaga K, Geretz A, Thomas R, Yamamoto F, Mallempati KC, Gangavarapu S, Kanga U, Tyagi S, Marsh SGE, Bultitude WP, Liu X, Cao D, Penning M, Hurley CK, Cesbron A, Mueller C, Mytilineos J, Weimer ET, Bengtsson M, Fischer G, Hansen JA, Chang CJ, Mack SJ, Creary LE, Fernandez-Viña MA.

Hum Immunol. 2019 Feb 6. pii: S0198-8859(19)30127-2. doi: 10.1016/j.humimm.2019.01.009. [Epub ahead of print] Review.

PMID:
30738112
2.

Tools for Building, Analyzing and Evaluating HLA Haplotypes from Families.

Osoegawa K, Mack SJ, Prestegaard M, Fernández-Viña MA.

Hum Immunol. 2019 Feb 5. pii: S0198-8859(19)30133-8. doi: 10.1016/j.humimm.2019.01.010. [Epub ahead of print] Review.

PMID:
30735756
3.

Clinical features, biochemistry and HLA-DRB1 status in youth-onset type 1 diabetes in Pakistan.

Fawwad A, Govender D, Ahmedani MY, Basit A, Lane JA, Mack SJ, Atkinson MA, Henry Wasserfall C, Ogle GD, Noble JA.

Diabetes Res Clin Pract. 2019 Jan 30;149:9-17. doi: 10.1016/j.diabres.2019.01.023. [Epub ahead of print]

PMID:
30710658
4.

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 496 adults from San Diego, California, USA.

Moore E, Grifoni A, Weiskopf D, Schulten V, Arlehamn CSL, Angelo M, Pham J, Leary S, Sidney J, Broide D, Frazier A, Phillips E, Mallal S, Mack SJ, Sette A.

Hum Immunol. 2018 Dec;79(12):821-822. doi: 10.1016/j.humimm.2018.09.008. Epub 2018 Sep 29.

PMID:
30278218
5.

Epidemiology of childhood-onset type 1 diabetes in Azerbaijan: Incidence, clinical features, biochemistry, and HLA-DRB1 status.

Ahmadov GA, Govender D, Atkinson MA, Sultanova RA, Eubova AA, Wasserfall CH, Mack SJ, Lane JA, Noble JA, Ogle GD.

Diabetes Res Clin Pract. 2018 Oct;144:252-259. doi: 10.1016/j.diabres.2018.09.009. Epub 2018 Sep 13.

PMID:
30218742
6.

Correction: High resolution HLA analysis reveals independent class I haplotypes and amino-acid motifs protective for multiple sclerosis.

Mack SJ, Udell J, Cohen F, Osoegawa K, Hawbecker SK, Noonan DA, Ladner MB, Goodridge D, Trachtenberg EA, Oksenberg JR, Erlich HA.

Genes Immun. 2018 Jun 18. doi: 10.1038/s41435-018-0037-9. [Epub ahead of print]

PMID:
29915315
7.

High resolution HLA analysis reveals independent class I haplotypes and amino-acid motifs protective for multiple sclerosis.

Mack SJ, Udell J, Cohen F, Osoegawa K, Hawbecker SK, Noonan DA, Ladner MB, Goodridge D, Trachtenberg EA, Oksenberg JR, Erlich HA.

Genes Immun. 2018 Jan 8. doi: 10.1038/s41435-017-0006-8. [Epub ahead of print] Erratum in: Genes Immun. 2018 Jun 18;:.

8.

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 714 adults from Colombo, Sri Lanka.

Grifoni A, Weiskopf D, Lindestam Arlehamn CS, Angelo M, Leary S, Sidney J, Frazier A, Phillips E, Mallal S, Mack SJ, Tippalagama R, Goonewardana S, Premawansa S, Premawansa G, Wijewickrama A, De Silva AD, Sette A.

Hum Immunol. 2018 Feb;79(2):87-88. doi: 10.1016/j.humimm.2017.12.007. Epub 2017 Dec 28.

9.

Collection and storage of HLA NGS genotyping data for the 17th International HLA and Immunogenetics Workshop.

Chang CJ, Osoegawa K, Milius RP, Maiers M, Xiao W, Fernandez-Viňa M, Mack SJ.

Hum Immunol. 2018 Feb;79(2):77-86. doi: 10.1016/j.humimm.2017.12.004. Epub 2017 Dec 14.

10.

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 339 adults from Managua, Nicaragua.

Weiskopf D, Grifoni A, Arlehamn CSL, Angelo M, Leary S, Sidney J, Frazier A, Mack SJ, Phillips E, Mallal S, Cerpas C, Balmaseda A, Harris E, Sette A.

Hum Immunol. 2018 Jan;79(1):1-2. doi: 10.1016/j.humimm.2017.11.002. Epub 2017 Nov 7.

11.

Significant variation between SNP-based HLA imputations in diverse populations: the last mile is the hardest.

Pappas DJ, Lizee A, Paunic V, Beutner KR, Motyer A, Vukcevic D, Leslie S, Biesiada J, Meller J, Taylor KD, Zheng X, Zhao LP, Gourraud PA, Hollenbach JA, Mack SJ, Maiers M.

Pharmacogenomics J. 2018 May 22;18(3):367-376. doi: 10.1038/tpj.2017.7. Epub 2017 Apr 25.

12.

Sequence-based HLA-A, B, C, DP, DQ, and DR typing of 100 Luo infants from the Boro area of Nyanza Province, Kenya.

Arlehamn CS, Copin R, Leary S, Mack SJ, Phillips E, Mallal S, Sette A, Blatner G, Siefers H, Ernst JD; TBRU-ASTRa Study Team.

Hum Immunol. 2017 Apr;78(4):325-326. doi: 10.1016/j.humimm.2017.03.007. Epub 2017 Mar 16.

13.

Update on short population reports.

Mack SJ, Middleton D.

Hum Immunol. 2016 Aug;77(8):617. doi: 10.1016/j.humimm.2016.06.019. No abstract available.

PMID:
27449832
14.

Bridging ImmunoGenomic Data Analysis Workflow Gaps (BIGDAWG): An integrated case-control analysis pipeline.

Pappas DJ, Marin W, Hollenbach JA, Mack SJ.

Hum Immunol. 2016 Mar;77(3):283-287. doi: 10.1016/j.humimm.2015.12.006. Epub 2015 Dec 18.

15.

The GL service: Web service to exchange GL string encoded HLA & KIR genotypes with complete and accurate allele and genotype ambiguity.

Milius RP, Heuer M, George M, Pollack J, Hollenbach JA, Mack SJ, Maiers M.

Hum Immunol. 2016 Mar;77(3):249-256. doi: 10.1016/j.humimm.2015.11.017. Epub 2015 Nov 24.

16.

HLA Haplotype Validator for quality assessments of HLA typing.

Osoegawa K, Mack SJ, Udell J, Noonan DA, Ozanne S, Trachtenberg E, Prestegaard M.

Hum Immunol. 2016 Mar;77(3):273-282. doi: 10.1016/j.humimm.2015.10.018. Epub 2015 Nov 10.

17.

A gene feature enumeration approach for describing HLA allele polymorphism.

Mack SJ.

Hum Immunol. 2015 Dec;76(12):975-81. doi: 10.1016/j.humimm.2015.09.016. Epub 2015 Sep 28.

18.

Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.

Mack SJ, Milius RP, Gifford BD, Sauter J, Hofmann J, Osoegawa K, Robinson J, Groeneweg M, Turenchalk GS, Adai A, Holcomb C, Rozemuller EH, Penning MT, Heuer ML, Wang C, Salit ML, Schmidt AH, Parham PR, Müller C, Hague T, Fischer G, Fernandez-Viňa M, Hollenbach JA, Norman PJ, Maiers M.

Hum Immunol. 2015 Dec;76(12):954-62. doi: 10.1016/j.humimm.2015.09.011. Epub 2015 Sep 25.

19.

Histoimmunogenetics Markup Language 1.0: Reporting next generation sequencing-based HLA and KIR genotyping.

Milius RP, Heuer M, Valiga D, Doroschak KJ, Kennedy CJ, Bolon YT, Schneider J, Pollack J, Kim HR, Cereb N, Hollenbach JA, Mack SJ, Maiers M.

Hum Immunol. 2015 Dec;76(12):963-74. doi: 10.1016/j.humimm.2015.08.001. Epub 2015 Aug 28.

20.

Introducing a new manuscript format: Enabling access to immunogenomic population data with short population reports.

Mack SJ, Middleton D.

Hum Immunol. 2015 Jun;76(6):393-4. doi: 10.1016/j.humimm.2015.03.014. Epub 2015 Apr 1. No abstract available.

PMID:
25842055
21.

HLA-DPB1 and HLA class I confer risk of and protection from narcolepsy.

Ollila HM, Ravel JM, Han F, Faraco J, Lin L, Zheng X, Plazzi G, Dauvilliers Y, Pizza F, Hong SC, Jennum P, Knudsen S, Kornum BR, Dong XS, Yan H, Hong H, Coquillard C, Mahlios J, Jolanki O, Einen M, Arnulf I, Högl B, Frauscher B, Crowe C, Partinen M, Huang YS, Bourgin P, Vaarala O, Désautels A, Montplaisir J, Mack SJ, Mindrinos M, Fernandez-Vina M, Mignot E.

Am J Hum Genet. 2015 Jan 8;96(1):136-46. doi: 10.1016/j.ajhg.2014.12.010. Erratum in: Am J Hum Genet. 2015 May 7;96(5):852. Lavault, Sophie [removed]; Arnulf, Isabelle [added].

22.

Genome-wide association study and admixture mapping reveal new loci associated with total IgE levels in Latinos.

Pino-Yanes M, Gignoux CR, Galanter JM, Levin AM, Campbell CD, Eng C, Huntsman S, Nishimura KK, Gourraud PA, Mohajeri K, O'Roak BJ, Hu D, Mathias RA, Nguyen EA, Roth LA, Padhukasahasram B, Moreno-Estrada A, Sandoval K, Winkler CA, Lurmann F, Davis A, Farber HJ, Meade K, Avila PC, Serebrisky D, Chapela R, Ford JG, Lenoir MA, Thyne SM, Brigino-Buenaventura E, Borrell LN, Rodriguez-Cintron W, Sen S, Kumar R, Rodriguez-Santana JR, Bustamante CD, Martinez FD, Raby BA, Weiss ST, Nicolae DL, Ober C, Meyers DA, Bleecker ER, Mack SJ, Hernandez RD, Eichler EE, Barnes KC, Williams LK, Torgerson DG, Burchard EG.

J Allergy Clin Immunol. 2015 Jun;135(6):1502-10. doi: 10.1016/j.jaci.2014.10.033. Epub 2014 Dec 6.

23.

Impact of water-soaking on the nutrient composition of UK hays.

Mack SJ, Dugdale AH, Argo CM, Morgan RA, McGowan CM.

Vet Rec. 2014 May 3;174(18):452. doi: 10.1136/vr.102074. Epub 2014 Mar 27. No abstract available.

PMID:
24675773
24.

Elevations in serum muscle enzyme activities in racehorses due to unaccustomed exercise and training.

Mack SJ, Kirkby K, Malalana F, McGowan CM.

Vet Rec. 2014 Feb 8;174(6):145. doi: 10.1136/vr.101669. Epub 2014 Jan 9.

PMID:
24415762
25.

Human immunology in the era of big data.

Mack SJ.

Hum Immunol. 2014 Jan;75(1):2-3. doi: 10.1016/j.humimm.2013.12.002. Epub 2013 Dec 11. No abstract available.

PMID:
24333353
26.

Genotype List String: a grammar for describing HLA and KIR genotyping results in a text string.

Milius RP, Mack SJ, Hollenbach JA, Pollack J, Heuer ML, Gragert L, Spellman S, Guethlein LA, Trachtenberg EA, Cooley S, Bochtler W, Mueller CR, Robinson J, Marsh SG, Maiers M.

Tissue Antigens. 2013 Aug;82(2):106-12. doi: 10.1111/tan.12150.

27.

Common and well-documented HLA alleles: 2012 update to the CWD catalogue.

Mack SJ, Cano P, Hollenbach JA, He J, Hurley CK, Middleton D, Moraes ME, Pereira SE, Kempenich JH, Reed EF, Setterholm M, Smith AG, Tilanus MG, Torres M, Varney MD, Voorter CE, Fischer GF, Fleischhauer K, Goodridge D, Klitz W, Little AM, Maiers M, Marsh SG, Müller CR, Noreen H, Rozemuller EH, Sanchez-Mazas A, Senitzer D, Trachtenberg E, Fernandez-Vina M.

Tissue Antigens. 2013 Apr;81(4):194-203. doi: 10.1111/tan.12093.

28.

16(th) IHIW: immunogenomic data-management methods. report from the immunogenomic data analysis working group (IDAWG).

Hollenbach JA, Holcomb C, Hurley CK, Mabdouly A, Maiers M, Noble JA, Robinson J, Schmidt AH, Shi L, Turner V, Yao Y, Mack SJ.

Int J Immunogenet. 2013 Feb;40(1):46-53. doi: 10.1111/iji.12026. Epub 2012 Dec 26.

29.

16(th) IHIW: extending the number of resources and bioinformatics analysis for the investigation of HLA rare alleles.

Gonzalez-Galarza FF, Mack SJ, Hollenbach J, Fernandez-Vina M, Setterholm M, Kempenich J, Marsh SG, Jones AR, Middleton D; HLA Rare Allele Consortium.

Int J Immunogenet. 2013 Feb;40(1):60-5. doi: 10.1111/iji.12030. Epub 2012 Dec 1.

PMID:
23198982
30.

A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric.

Bronson PG, Mack SJ, Erlich HA, Slatkin M.

Hum Mol Genet. 2013 Jan 15;22(2):252-61. doi: 10.1093/hmg/dds424. Epub 2012 Oct 12.

31.

Analytical methods for disease association studies with immunogenetic data.

Hollenbach JA, Mack SJ, Thomson G, Gourraud PA.

Methods Mol Biol. 2012;882:245-66. doi: 10.1007/978-1-61779-842-9_14.

32.

Analytical methods for immunogenetic population data.

Mack SJ, Gourraud PA, Single RM, Thomson G, Hollenbach JA.

Methods Mol Biol. 2012;882:215-44. doi: 10.1007/978-1-61779-842-9_13.

33.

Standard methods for the management of immunogenetic data.

Gourraud PA, Hollenbach JA, Barnetche T, Single RM, Mack SJ.

Methods Mol Biol. 2012;882:197-213. doi: 10.1007/978-1-61779-842-9_12.

34.

The CWD allele catalog in China.

Cano P, Mack SJ, Fernández-Viña M.

Hum Immunol. 2012 Jan;73(1):60. doi: 10.1016/j.humimm.2011.08.010. Epub 2011 Aug 30. No abstract available.

PMID:
22056614
35.

A community standard for immunogenomic data reporting and analysis: proposal for a STrengthening the REporting of Immunogenomic Studies statement.

Hollenbach JA, Mack SJ, Gourraud PA, Single RM, Maiers M, Middleton D, Thomson G, Marsh SG, Varney MD; Immunogenomics Data Analysis Working Group.

Tissue Antigens. 2011 Nov;78(5):333-44. doi: 10.1111/j.1399-0039.2011.01777.x.

36.

Immunogenetics as a tool in anthropological studies.

Sanchez-Mazas A, Fernandez-Viña M, Middleton D, Hollenbach JA, Buhler S, Di D, Rajalingam R, Dugoujon JM, Mack SJ, Thorsby E.

Immunology. 2011 Jun;133(2):143-64. doi: 10.1111/j.1365-2567.2011.03438.x. Epub 2011 Apr 11. Review.

37.

Modulation of the glyoxalase system in the aging model Podospora anserina: effects on growth and lifespan.

Scheckhuber CQ, Mack SJ, Strobel I, Ricciardi F, Gispert S, Osiewacz HD.

Aging (Albany NY). 2010 Dec;2(12):969-80.

38.
39.
40.

Association analysis of SNPs in the IL4R locus with type I diabetes.

Erlich HA, Lohman K, Mack SJ, Valdes AM, Julier C, Mirel D, Noble JA, Morahan GE, Rich SS; Type I Diabetes Genetics Consortium.

Genes Immun. 2009 Dec;10 Suppl 1:S33-41. doi: 10.1038/gene.2009.89.

41.

Sequence feature variant type (SFVT) analysis of the HLA genetic association in juvenile idiopathic arthritis.

Thomson G, Marthandan N, Hollenbach JA, Mack SJ, Erlich HA, Single RM, Waller MJ, Marsh SG, Guidry PA, Karp DR, Scheuermann RH, Thompson SD, Glass DN, Helmberg W.

Pac Symp Biocomput. 2010:359-70.

42.

HLA-A, -B, -C, and -DRB1 allele and haplotype frequencies distinguish Eastern European Americans from the general European American population.

Mack SJ, Tu B, Lazaro A, Yang R, Lancaster AK, Cao K, Ng J, Hurley CK.

Tissue Antigens. 2009 Jan;73(1):17-32. doi: 10.1111/j.1399-0039.2008.01151.x. Epub 2008 Oct 24.

43.

Balancing selection and heterogeneity across the classical human leukocyte antigen loci: a meta-analytic review of 497 population studies.

Solberg OD, Mack SJ, Lancaster AK, Single RM, Tsai Y, Sanchez-Mazas A, Thomson G.

Hum Immunol. 2008 Jul;69(7):443-64. doi: 10.1016/j.humimm.2008.05.001. Epub 2008 Jun 9.

44.

Genetic origin of the Swedish Sami inferred from HLA class I and class II allele frequencies.

Johansson A, Ingman M, Mack SJ, Erlich H, Gyllensten U.

Eur J Hum Genet. 2008 Nov;16(11):1341-9. doi: 10.1038/ejhg.2008.88. Epub 2008 May 14.

45.

Common and well-documented HLA alleles: report of the Ad-Hoc committee of the american society for histocompatiblity and immunogenetics.

Cano P, Klitz W, Mack SJ, Maiers M, Marsh SG, Noreen H, Reed EF, Senitzer D, Setterholm M, Smith A, Fernández-Viña M.

Hum Immunol. 2007 May;68(5):392-417. Epub 2007 Feb 15.

PMID:
17462507
46.

Population samples and genotyping technology.

Mack SJ, Sanchez-Mazas A, Single RM, Meyer D, Hill J, Dron HA, Jani AJ, Thomson G, Erlich HA.

Tissue Antigens. 2007 Apr;69 Suppl 1:188-91. Review.

PMID:
17445198
47.

14th International HLA and Immunogenetics Workshop: report of progress in methodology, data collection, and analyses.

Single RM, Meyer D, Mack SJ, Lancaster A, Erlich HA, Thomson G.

Tissue Antigens. 2007 Apr;69 Suppl 1:185-7. Review.

PMID:
17445197
48.

HLA-A, -B, -C, -DRB1 allele and haplotype frequencies in an African American population.

Tu B, Mack SJ, Lazaro A, Lancaster A, Thomson G, Cao K, Chen M, Ling G, Hartzman R, Ng J, Hurley CK.

Tissue Antigens. 2007 Jan;69(1):73-85.

PMID:
17212710
49.

Signatures of demographic history and natural selection in the human major histocompatibility complex Loci.

Meyer D, Single RM, Mack SJ, Erlich HA, Thomson G.

Genetics. 2006 Aug;173(4):2121-42. Epub 2006 May 15.

50.

Effect of brushing on fluoride release from 3 bracket adhesives.

Staley RN, Mack SJ, Wefel JS, Vargas MA, Jakobsen JR.

Am J Orthod Dentofacial Orthop. 2004 Sep;126(3):331-6.

PMID:
15356497

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