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Draft Genome Sequence of Saccharomyces cerevisiae Strain Hm-1, Isolated from Cotton Rosemallow.

Takahashi H, Sakagawa E, Sakakibara I, Machida C, Miyaki S, Takahashi A, Onai S, Fukuyoshi S, Ohta A, Satou K, Kanamasa S.

Microbiol Resour Announc. 2018 Oct 4;7(13). pii: e01184-18. doi: 10.1128/MRA.01184-18. eCollection 2018 Oct.


Arabidopsis Zinc-Finger-Like Protein ASYMMETRIC LEAVES2 (AS2) and Two Nucleolar Proteins Maintain Gene Body DNA Methylation in the Leaf Polarity Gene ETTIN (ARF3).

Vial-Pradel S, Keta S, Nomoto M, Luo L, Takahashi H, Suzuki M, Yokoyama Y, Sasabe M, Kojima S, Tada Y, Machida Y, Machida C.

Plant Cell Physiol. 2018 Jul 1;59(7):1385-1397. doi: 10.1093/pcp/pcy031.


A genetic link between epigenetic repressor AS1-AS2 and DNA replication factors in establishment of adaxial-abaxial leaf polarity of Arabidopsis.

Luong TQ, Keta S, Asai T, Kojima S, Nakagawa A, Micol JL, Xia S, Machida Y, Machida C.

Plant Biotechnol (Tokyo). 2018;35(1):39-49. doi: 10.5511/plantbiotechnology.18.0129b. Epub 2018 Mar 28.


A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.

Matsumura Y, Ohbayashi I, Takahashi H, Kojima S, Ishibashi N, Keta S, Nakagawa A, Hayashi R, Saéz-Vásquez J, Echeverria M, Sugiyama M, Nakamura K, Machida C, Machida Y.

Biol Open. 2016 Jul 15;5(7):942-54. doi: 10.1242/bio.019109.


Oral microbiota species in acute apical endodontic abscesses.

George N, Flamiatos E, Kawasaki K, Kim N, Carriere C, Phan B, Joseph R, Strauss S, Kohli R, Choi D, Baumgartner JC, Sedgley C, Maier T, Machida CA.

J Oral Microbiol. 2016 Mar 15;8:30989. doi: 10.3402/jom.v8.30989. eCollection 2016.


The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.

Machida C, Nakagawa A, Kojima S, Takahashi H, Machida Y.

Wiley Interdiscip Rev Dev Biol. 2015 Nov-Dec;4(6):655-71. doi: 10.1002/wdev.196. Epub 2015 Jun 24. Review.


Children with severe early childhood caries: streptococci genetic strains within carious and white spot lesions.

Gilbert K, Joseph R, Vo A, Patel T, Chaudhry S, Nguyen U, Trevor A, Robinson E, Campbell M, McLennan J, Houran F, Wong T, Flann K, Wages M, Palmer EA, Peterson J, Engle J, Maier T, Machida CA.

J Oral Microbiol. 2014 Oct 29;6. doi: 10.3402/jom.v6.25805. eCollection 2014.


Protein encoded by oncogene 6b from Agrobacterium tumefaciens has a reprogramming potential and histone chaperone-like activity.

Ishibashi N, Kitakura S, Terakura S, Machida C, Machida Y.

Front Plant Sci. 2014 Oct 28;5:572. doi: 10.3389/fpls.2014.00572. eCollection 2014. Review.


Comparison of pixantrone-based regimen (CPOP-R) with doxorubicin-based therapy (CHOP-R) for treatment of diffuse large B-cell lymphoma.

Herbrecht R, Cernohous P, Engert A, Le Gouill S, Macdonald D, Machida C, Myint H, Saleh A, Singer J, Wilhelm M, van der Jagt R.

Ann Oncol. 2013 Oct;24(10):2618-23. doi: 10.1093/annonc/mdt289. Epub 2013 Aug 14.


Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis.

Iwasaki M, Takahashi H, Iwakawa H, Nakagawa A, Ishikawa T, Tanaka H, Matsumura Y, Pekker I, Eshed Y, Vial-Pradel S, Ito T, Watanabe Y, Ueno Y, Fukazawa H, Kojima S, Machida Y, Machida C.

Development. 2013 May;140(9):1958-69. doi: 10.1242/dev.085365.


Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role for the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development.

Takahashi H, Iwakawa H, Ishibashi N, Kojima S, Matsumura Y, Prananingrum P, Iwasaki M, Takahashi A, Ikezaki M, Luo L, Kobayashi T, Machida Y, Machida C.

Plant Cell Physiol. 2013 Mar;54(3):418-31. doi: 10.1093/pcp/pct027. Epub 2013 Feb 8.


Mutans streptococci genetic strains in children with severe early childhood caries: follow-up study at one-year post-dental rehabilitation therapy.

Palmer EA, Vo A, Hiles SB, Peirano P, Chaudhry S, Trevor A, Kasimi I, Pollard J, Kyles C, Leo M, Wilmot B, Engle J, Peterson J, Maier T, Machida CA.

J Oral Microbiol. 2012;4. doi: 10.3402/jom.v4i0.19530. Epub 2012 Dec 14.


ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis.

Ishibashi N, Kanamaru K, Ueno Y, Kojima S, Kobayashi T, Machida C, Machida Y.

Biol Open. 2012 Mar 15;1(3):197-207. doi: 10.1242/bio.2012406. Epub 2012 Jan 6.


Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods.

Takahashi H, Nakagawa A, Kojima S, Takahashi A, Cha BY, Woo JT, Nagai K, Machida Y, Machida C.

J Biosci Bioeng. 2012 Nov;114(5):570-5. doi: 10.1016/j.jbiosc.2012.05.017. Epub 2012 Jun 20.


Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana.

Nakagawa A, Takahashi H, Kojima S, Sato N, Ohga K, Cha BY, Woo JT, Nagai K, Horiguchi G, Tsukaya H, Machida Y, Machida C.

Plant Mol Biol. 2012 Aug;79(6):569-81. doi: 10.1007/s11103-012-9929-7. Epub 2012 Jun 10.


Children with severe early childhood caries: pilot study examining mutans streptococci genotypic strains after full-mouth caries restorative therapy.

Palmer EA, Nielsen T, Peirano P, Nguyen AT, Vo A, Nguyen A, Jackson S, Finlayson T, Sauerwein R, Marsh K, Edwards I, Wilmot B, Engle J, Peterson J, Maier T, Machida CA.

Pediatr Dent. 2012 Mar-Apr;34(2):e1-10.


Arabidopsis ASYMMETRIC LEAVES2 protein required for leaf morphogenesis consistently forms speckles during mitosis of tobacco BY-2 cells via signals in its specific sequence.

Luo L, Ando S, Sasabe M, Machida C, Kurihara D, Higashiyama T, Machida Y.

J Plant Res. 2012 Sep;125(5):661-8. doi: 10.1007/s10265-012-0479-5. Epub 2012 Feb 17.


Elastomeric-ligated vs self-ligating appliances: a pilot study examining microbial colonization and white spot lesion formation after 1 year of orthodontic treatment.

Buck T, Pellegrini P, Sauerwein R, Leo MC, Covell DA Jr, Maier T, Machida CA.

Orthodontics (Chic.). 2011 Summer;12(2):108-21.


Asymmetric leaves2 and Elongator, a histone acetyltransferase complex, mediate the establishment of polarity in leaves of Arabidopsis thaliana.

Kojima S, Iwasaki M, Takahashi H, Imai T, Matsumura Y, Fleury D, Van Lijsebettens M, Machida Y, Machida C.

Plant Cell Physiol. 2011 Aug;52(8):1259-73. doi: 10.1093/pcp/pcr083. Epub 2011 Jun 23.


Application of adenosine triphosphate-driven bioluminescence for quantification of plaque bacteria and assessment of oral hygiene in children.

Fazilat S, Sauerwein R, McLeod J, Finlayson T, Adam E, Engle J, Gagneja P, Maier T, Machida CA.

Pediatr Dent. 2010 May-Jun;32(3):195-204.


Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis thaliana: KNOX genes control five morphological events.

Ikezaki M, Kojima M, Sakakibara H, Kojima S, Ueno Y, Machida C, Machida Y.

Plant J. 2010 Jan;61(1):70-82. doi: 10.1111/j.1365-313X.2009.04033.x. Epub 2009 Sep 26.


Plaque retention by self-ligating vs elastomeric orthodontic brackets: quantitative comparison of oral bacteria and detection with adenosine triphosphate-driven bioluminescence.

Pellegrini P, Sauerwein R, Finlayson T, McLeod J, Covell DA Jr, Maier T, Machida CA.

Am J Orthod Dentofacial Orthop. 2009 Apr;135(4):426.e1-9; discussion 426-7. doi: 10.1016/j.ajodo.2008.12.002.


Herpesviruses in abscesses and cellulitis of endodontic origin.

Chen V, Chen Y, Li H, Kent K, Baumgartner JC, Machida CA.

J Endod. 2009 Feb;35(2):182-8. doi: 10.1016/j.joen.2008.11.018.


Knowledge-based fuzzy adaptive resonance theory and its application to the analysis of gene expression in plants.

Takahashi H, Iwakawa H, Nakao S, Ojio T, Morishita R, Morikawa S, Machida Y, Machida C, Kobayashi T.

J Biosci Bioeng. 2008 Dec;106(6):587-93. doi: 10.1263/jbb.106.587.


Herpesviruses in endodontic pathoses: association of Epstein-Barr virus with irreversible pulpitis and apical periodontitis.

Li H, Chen V, Chen Y, Baumgartner JC, Machida CA.

J Endod. 2009 Jan;35(1):23-9. doi: 10.1016/j.joen.2008.09.017. Epub 2008 Oct 31.


betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses.

Yang JY, Iwasaki M, Machida C, Machida Y, Zhou X, Chua NH.

Genes Dev. 2008 Sep 15;22(18):2564-77. doi: 10.1101/gad.1682208.


Interaction between Agrobacterium tumefaciens oncoprotein 6b and a tobacco nucleolar protein that is homologous to TNP1 encoded by a transposable element of Antirrhinum majus.

Kitakura S, Terakura S, Yoshioka Y, Machida C, Machida Y.

J Plant Res. 2008 Jul;121(4):425-33. doi: 10.1007/s10265-008-0160-1. Epub 2008 May 8.


EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana.

Ishikawa T, Machida C, Yoshioka Y, Ueda T, Nakano A, Machida Y.

Genes Cells. 2008 Jun;13(6):521-35. doi: 10.1111/j.1365-2443.2008.01186.x. Epub 2008 Apr 17.


An oncoprotein from the plant pathogen agrobacterium has histone chaperone-like activity.

Terakura S, Ueno Y, Tagami H, Kitakura S, Machida C, Wabiko H, Aiba H, Otten L, Tsukagoshi H, Nakamura K, Machida Y.

Plant Cell. 2007 Sep;19(9):2855-65. Epub 2007 Sep 21. Erratum in: Plant Cell. 2007 Nov;19(11):3832.


Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves.

Iwakawa H, Iwasaki M, Kojima S, Ueno Y, Soma T, Tanaka H, Semiarti E, Machida Y, Machida C.

Plant J. 2007 Jul;51(2):173-84. Epub 2007 Jun 8.


Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis.

Tanaka H, Watanabe M, Sasabe M, Hiroe T, Tanaka T, Tsukaya H, Ikezaki M, Machida C, Machida Y.

Development. 2007 May;134(9):1643-52. Epub 2007 Mar 21.


Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis.

Ueno Y, Ishikawa T, Watanabe K, Terakura S, Iwakawa H, Okada K, Machida C, Machida Y.

Plant Cell. 2007 Feb;19(2):445-57. Epub 2007 Feb 9.


CRM 1-mediated degradation and agonist-induced down-regulation of beta-adrenergic receptor mRNAs.

Bai Y, Lu H, Machida CA.

Biochim Biophys Acta. 2006 Oct;1763(10):1076-89. Epub 2006 Aug 22.


Role of Tyr(356(7.43)) and Ser(190(4.57)) in antagonist binding in the rat beta1-adrenergic receptor.

Rezmann-Vitti LA, Nero TL, Jackman GP, Machida CA, Duke BJ, Louis WJ, Louis SN.

J Med Chem. 2006 Jun 15;49(12):3467-77.


Oncogene 6b from Agrobacterium tumefaciens induces abaxial cell division at late stages of leaf development and modifies vascular development in petioles.

Terakura S, Kitakura S, Ishikawa M, Ueno Y, Fujita T, Machida C, Wabiko H, Machida Y.

Plant Cell Physiol. 2006 May;47(5):664-72. Epub 2006 Mar 17.


[Mechanisms of axis formation in plant morphogenesis].

Kojima S, Machida Y, Machida C.

Tanpakushitsu Kakusan Koso. 2005 May;50(6 Suppl):724-30. Review. Japanese. No abstract available.


The cost and yield of photoscreening: impact of photoscreening on overall pediatric ophthalmic costs.

Arnold RW, Armitage MD, Gionet EG, Balinger A, Kovtoun TA, Machida C, Coon LJ.

J Pediatr Ophthalmol Strabismus. 2005 Mar-Apr;42(2):103-11.


The AtNACK1/HINKEL and STUD/TETRASPORE/AtNACK2 genes, which encode functionally redundant kinesins, are essential for cytokinesis in Arabidopsis.

Tanaka H, Ishikawa M, Kitamura S, Takahashi Y, Soyano T, Machida C, Machida Y.

Genes Cells. 2004 Dec;9(12):1199-211.


Agonist binding and activation of the rat beta(1)-adrenergic receptor: role of Trp(134(3.28)), Ser(190(4.57)) and Tyr(356(7.43)).

Rezmann-Vitti LA, Louis SN, Nero TL, Jackman GP, Iakovidis D, Machida CA, Louis WJ.

Biochem Pharmacol. 2004 Aug 15;68(4):675-88.


The ACR4 receptor-like kinase is required for surface formation of epidermis-related tissues in Arabidopsis thaliana.

Watanabe M, Tanaka H, Watanabe D, Machida C, Machida Y.

Plant J. 2004 Aug;39(3):298-308.


Site-directed mutagenesis of the rat beta1-adrenoceptor. Involvement of Tyr356 (7.43) in (+/-)cyanopindolol but not (+/-)[125Iodo]cyanopindolol binding.

Rezmann-Vitti LA, Louis SN, Nero TL, Jackman GP, Machida CA, Louis WJ.

Eur J Med Chem. 2004 Jul;39(7):625-31.


UV cross-linking/immunoprecipitation assay: glucocorticoid receptor-adrenergic receptor gene sequence interaction.

Bai Y, Kirigiti P, Li X, Li B, Tian L, Ma MY, Machida CA.

Biotechniques. 2003 Jul;35(1):100-4, 106, 108-11.


The effect of induced muscle tension and fatigue on the oculocardiac reflex.

Machida CJ, Arnold RW.

Binocul Vis Strabismus Q. 2003;18(2):81-6.


Development of simian retroviral vectors for gene delivery.

Li B, Machida CA.

Methods Mol Med. 2003;76:353-65. No abstract available.


[Mechanism of regulation for formation of a symmetric flat leaf lamina in leaf development].

Ueno Y, Machida C, Machida Y.

Tanpakushitsu Kakusan Koso. 2002 Sep;47(12 Suppl):1570-5. Review. Japanese. No abstract available.


The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper.

Iwakawa H, Ueno Y, Semiarti E, Onouchi H, Kojima S, Tsukaya H, Hasebe M, Soma T, Ikezaki M, Machida C, Machida Y.

Plant Cell Physiol. 2002 May;43(5):467-78.


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