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Items: 1 to 50 of 134

1.

Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp.

Vignolle GA, Mach RL, Mach-Aigner AR, Derntl C.

BMC Genomics. 2020 Mar 27;21(1):258. doi: 10.1186/s12864-020-6653-6.

2.

Regulatory systems for gene expression control in cyanobacteria.

Till P, Toepel J, Bühler B, Mach RL, Mach-Aigner AR.

Appl Microbiol Biotechnol. 2020 Mar;104(5):1977-1991. doi: 10.1007/s00253-019-10344-w. Epub 2020 Jan 22. Review.

3.

Phenotypic and Genotypic Antimicrobial Resistance Traits of Vibrio cholerae Non-O1/Non-O139 Isolated From a Large Austrian Lake Frequently Associated With Cases of Human Infection.

Lepuschitz S, Baron S, Larvor E, Granier SA, Pretzer C, Mach RL, Farnleitner AH, Ruppitsch W, Pleininger S, Indra A, Kirschner AKT.

Front Microbiol. 2019 Nov 8;10:2600. doi: 10.3389/fmicb.2019.02600. eCollection 2019.

4.

Fusion transcription factors for strong, constitutive expression of cellulases and xylanases in Trichoderma reesei.

Derntl C, Mach RL, Mach-Aigner AR.

Biotechnol Biofuels. 2019 Sep 30;12:231. doi: 10.1186/s13068-019-1575-8. eCollection 2019.

5.

Simple lysis of bacterial cells for DNA-based diagnostics using hydrophilic ionic liquids.

Martzy R, Bica-Schröder K, Pálvölgyi ÁM, Kolm C, Jakwerth S, Kirschner AKT, Sommer R, Krska R, Mach RL, Farnleitner AH, Reischer GH.

Sci Rep. 2019 Sep 30;9(1):13994. doi: 10.1038/s41598-019-50246-5.

6.

Regulation of gene expression by the action of a fungal lncRNA on a transactivator.

Till P, Derntl C, Kiesenhofer DP, Mach RL, Yaver D, Mach-Aigner AR.

RNA Biol. 2020 Jan;17(1):47-61. doi: 10.1080/15476286.2019.1663618. Epub 2019 Sep 13.

7.

Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community.

Savio D, Stadler P, Reischer GH, Demeter K, Linke RB, Blaschke AP, Mach RL, Kirschner AKT, Stadler H, Farnleitner AH.

Front Microbiol. 2019 Feb 15;10:28. doi: 10.3389/fmicb.2019.00028. eCollection 2019.

8.

Multicenter Study of Cronobacter sakazakii Infections in Humans, Europe, 2017.

Lepuschitz S, Ruppitsch W, Pekard-Amenitsch S, Forsythe SJ, Cormican M, Mach RL, Piérard D, Allerberger F; EUCRONI Study Group.

Emerg Infect Dis. 2019 Mar;25(3):515-522. doi: 10.3201/eid2503.181652.

9.

Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals.

Lepuschitz S, Schill S, Stoeger A, Pekard-Amenitsch S, Huhulescu S, Inreiter N, Hartl R, Kerschner H, Sorschag S, Springer B, Brisse S, Allerberger F, Mach RL, Ruppitsch W.

Sci Total Environ. 2019 Apr 20;662:227-235. doi: 10.1016/j.scitotenv.2019.01.179. Epub 2019 Jan 20.

10.

Detection of a microbial source tracking marker by isothermal helicase-dependent amplification and a nucleic acid lateral-flow strip test.

Kolm C, Martzy R, Führer M, Mach RL, Krska R, Baumgartner S, Farnleitner AH, Reischer GH.

Sci Rep. 2019 Jan 23;9(1):393. doi: 10.1038/s41598-018-36749-7.

11.

Challenges and perspectives in the application of isothermal DNA amplification methods for food and water analysis.

Martzy R, Kolm C, Krska R, Mach RL, Farnleitner AH, Reischer GH.

Anal Bioanal Chem. 2019 Mar;411(9):1695-1702. doi: 10.1007/s00216-018-1553-1. Epub 2019 Jan 8.

12.

Combining paratransgenesis with SIT: impact of ionizing radiation on the DNA copy number of Sodalis glossinidius in tsetse flies.

Demirbas-Uzel G, De Vooght L, Parker AG, Vreysen MJB, Mach RL, Van Den Abbeele J, Abd-Alla AMM.

BMC Microbiol. 2018 Nov 23;18(Suppl 1):160. doi: 10.1186/s12866-018-1283-8.

13.

Impact of Glossina pallidipes salivary gland hypertrophy virus (GpSGHV) on a heterologous tsetse fly host, Glossina fuscipes fuscipes.

Demirbas-Uzel G, Parker AG, Vreysen MJB, Mach RL, Bouyer J, Takac P, Abd-Alla AMM.

BMC Microbiol. 2018 Nov 23;18(Suppl 1):161. doi: 10.1186/s12866-018-1276-7.

14.

Truncation of the transcriptional repressor protein Cre1 in Trichoderma reesei Rut-C30 turns it into an activator.

Rassinger A, Gacek-Matthews A, Strauss J, Mach RL, Mach-Aigner AR.

Fungal Biol Biotechnol. 2018 Aug 20;5:15. doi: 10.1186/s40694-018-0059-0. eCollection 2018.

15.

A current view on long noncoding RNAs in yeast and filamentous fungi.

Till P, Mach RL, Mach-Aigner AR.

Appl Microbiol Biotechnol. 2018 Sep;102(17):7319-7331. doi: 10.1007/s00253-018-9187-y. Epub 2018 Jul 4. Review.

16.

Characterization of a community-acquired-MRSA USA300 isolate from a river sample in Austria and whole genome sequence based comparison to a diverse collection of USA300 isolates.

Lepuschitz S, Huhulescu S, Hyden P, Springer B, Rattei T, Allerberger F, Mach RL, Ruppitsch W.

Sci Rep. 2018 Jun 21;8(1):9467. doi: 10.1038/s41598-018-27781-8.

17.

Opening the black box of spring water microbiology from alpine karst aquifers to support proactive drinking water resource management.

Savio D, Stadler P, Reischer GH, Kirschner AKT, Demeter K, Linke R, Blaschke AP, Sommer R, Szewzyk U, Wilhartitz IC, Mach RL, Stadler H, Farnleitner AH.

WIREs Water. 2018 May-Jun;5(3):e1282. doi: 10.1002/wat2.1282. Epub 2018 Mar 9. Review.

18.

Susceptibility of Tsetse Species to Glossina pallidipes Salivary Gland Hypertrophy Virus (GpSGHV).

Demirbas-Uzel G, Kariithi HM, Parker AG, Vreysen MJB, Mach RL, Abd-Alla AMM.

Front Microbiol. 2018 Apr 9;9:701. doi: 10.3389/fmicb.2018.00701. eCollection 2018.

19.

A long noncoding RNA promotes cellulase expression in Trichoderma reesei.

Till P, Pucher ME, Mach RL, Mach-Aigner AR.

Biotechnol Biofuels. 2018 Mar 23;11:78. doi: 10.1186/s13068-018-1081-4. eCollection 2018.

20.

Global Distribution of Human-Associated Fecal Genetic Markers in Reference Samples from Six Continents.

Mayer RE, Reischer GH, Ixenmaier SK, Derx J, Blaschke AP, Ebdon JE, Linke R, Egle L, Ahmed W, Blanch AR, Byamukama D, Savill M, Mushi D, Cristóbal HA, Edge TA, Schade MA, Aslan A, Brooks YM, Sommer R, Masago Y, Sato MI, Taylor HD, Rose JB, Wuertz S, Shanks OC, Piringer H, Mach RL, Savio D, Zessner M, Farnleitner AH.

Environ Sci Technol. 2018 May 1;52(9):5076-5084. doi: 10.1021/acs.est.7b04438. Epub 2018 Apr 16.

21.

Erythritol as sweetener-wherefrom and whereto?

Regnat K, Mach RL, Mach-Aigner AR.

Appl Microbiol Biotechnol. 2018 Jan;102(2):587-595. doi: 10.1007/s00253-017-8654-1. Epub 2017 Dec 1. Review.

22.

The DNA-methyltransferase inhibitor 5-aza-2-deoxycytidine affects Humicola grisea enzyme activities and the glucose-mediated gene repression.

Manfrão-Netto JHC, Mello-de-Sousa TM, Mach-Aigner AR, Mach RL, Poças-Fonseca MJ.

J Basic Microbiol. 2018 Feb;58(2):144-153. doi: 10.1002/jobm.201700415. Epub 2017 Nov 28.

PMID:
29193198
23.

In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei.

Derntl C, Guzmán-Chávez F, Mello-de-Sousa TM, Busse HJ, Driessen AJM, Mach RL, Mach-Aigner AR.

Front Microbiol. 2017 Oct 20;8:2037. doi: 10.3389/fmicb.2017.02037. eCollection 2017.

24.

Correction for Derntl et al., "Novel Strategies for Genomic Manipulation of Trichoderma reesei with the Purpose of Strain Engineering".

Derntl C, Kiesenhofer DP, Mach RL, Mach-Aigner AR.

Appl Environ Microbiol. 2017 Oct 31;83(22). pii: e01960-17. doi: 10.1128/AEM.01960-17. Print 2017 Nov 15. No abstract available.

25.

Influence of cis Element Arrangement on Promoter Strength in Trichoderma reesei.

Kiesenhofer DP, Mach RL, Mach-Aigner AR.

Appl Environ Microbiol. 2017 Dec 15;84(1). pii: e01742-17. doi: 10.1128/AEM.01742-17. Print 2018 Jan 1.

26.

Multiparametric monitoring of microbial faecal pollution reveals the dominance of human contamination along the whole Danube River.

Kirschner AKT, Reischer GH, Jakwerth S, Savio D, Ixenmaier S, Toth E, Sommer R, Mach RL, Linke R, Eiler A, Kolarevic S, Farnleitner AH.

Water Res. 2017 Nov 1;124:543-555. doi: 10.1016/j.watres.2017.07.052. Epub 2017 Jul 22.

27.

A loop-mediated isothermal amplification (LAMP) assay for the rapid detection of Enterococcus spp. in water.

Martzy R, Kolm C, Brunner K, Mach RL, Krska R, Šinkovec H, Sommer R, Farnleitner AH, Reischer GH.

Water Res. 2017 Oct 1;122:62-69. doi: 10.1016/j.watres.2017.05.023. Epub 2017 May 13.

28.

A Complementary Isothermal Amplification Method to the U.S. EPA Quantitative Polymerase Chain Reaction Approach for the Detection of Enterococci in Environmental Waters.

Kolm C, Martzy R, Brunner K, Mach RL, Krska R, Heinze G, Sommer R, Reischer GH, Farnleitner AH.

Environ Sci Technol. 2017 Jun 20;51(12):7028-7035. doi: 10.1021/acs.est.7b01074. Epub 2017 Jun 9.

29.

Transcription factor Xpp1 is a switch between primary and secondary fungal metabolism.

Derntl C, Kluger B, Bueschl C, Schuhmacher R, Mach RL, Mach-Aigner AR.

Proc Natl Acad Sci U S A. 2017 Jan 24;114(4):E560-E569. doi: 10.1073/pnas.1609348114. Epub 2017 Jan 10.

30.

Identification of the Main Regulator Responsible for Synthesis of the Typical Yellow Pigment Produced by Trichoderma reesei.

Derntl C, Rassinger A, Srebotnik E, Mach RL, Mach-Aigner AR.

Appl Environ Microbiol. 2016 Sep 30;82(20):6247-6257. Print 2016 Oct 15.

31.

The Post-genomic Era of Trichoderma reesei: What's Next?

Gupta VK, Steindorff AS, de Paula RG, Silva-Rocha R, Mach-Aigner AR, Mach RL, Silva RN.

Trends Biotechnol. 2016 Dec;34(12):970-982. doi: 10.1016/j.tibtech.2016.06.003. Epub 2016 Jul 6. Review.

PMID:
27394390
32.

The Relation Between Promoter Chromatin Status, Xyr1 and Cellulase Ex-pression in Trichoderma reesei.

Mello-de-Sousa TM, Rassinger A, Derntl C, Poças-Fonseca MJ, Mach RL, Mach-Aigner AR.

Curr Genomics. 2016 Apr;17(2):145-52. doi: 10.2174/1389202917666151116211812.

33.

Occurrence of human-associated Bacteroidetes genetic source tracking markers in raw and treated wastewater of municipal and domestic origin and comparison to standard and alternative indicators of faecal pollution.

Mayer RE, Bofill-Mas S, Egle L, Reischer GH, Schade M, Fernandez-Cassi X, Fuchs W, Mach RL, Lindner G, Kirschner A, Gaisbauer M, Piringer H, Blaschke AP, Girones R, Zessner M, Sommer R, Farnleitner AH.

Water Res. 2016 Mar 1;90:265-276. doi: 10.1016/j.watres.2015.12.031. Epub 2015 Dec 19.

34.

Potential applications of next generation DNA sequencing of 16S rRNA gene amplicons in microbial water quality monitoring.

Vierheilig J, Savio D, Ley RE, Mach RL, Farnleitner AH, Reischer GH.

Water Sci Technol. 2015;72(11):1962-72. doi: 10.2166/wst.2015.407. Erratum in: Water Sci Technol. 2016;73(7):1768.

35.

The impact of chromatin remodelling on cellulase expression in Trichoderma reesei.

Mello-de-Sousa TM, Rassinger A, Pucher ME, dos Santos Castro L, Persinoti GF, Silva-Rocha R, Poças-Fonseca MJ, Mach RL, Nascimento Silva R, Mach-Aigner AR.

BMC Genomics. 2015 Aug 7;16:588. doi: 10.1186/s12864-015-1807-7.

36.

Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei.

Derntl C, Rassinger A, Srebotnik E, Mach RL, Mach-Aigner AR.

Biotechnol Biofuels. 2015 Aug 6;8:112. doi: 10.1186/s13068-015-0298-8. eCollection 2015.

37.

Novel Strategies for Genomic Manipulation of Trichoderma reesei with the Purpose of Strain Engineering.

Derntl C, Kiesenhofer DP, Mach RL, Mach-Aigner AR.

Appl Environ Microbiol. 2015 Sep;81(18):6314-23. doi: 10.1128/AEM.01545-15. Epub 2015 Jul 6. Erratum in: Appl Environ Microbiol. 2017 Oct 31;83(22):.

38.

Automated Sampling Procedures Supported by High Persistence of Bacterial Fecal Indicators and Bacteroidetes Genetic Microbial Source Tracking Markers in Municipal Wastewater during Short-Term Storage at 5°C.

Mayer RE, Vierheilig J, Egle L, Reischer GH, Saracevic E, Mach RL, Kirschner AK, Zessner M, Sommer R, Farnleitner AH.

Appl Environ Microbiol. 2015 Aug;81(15):5134-43. doi: 10.1128/AEM.00998-15. Epub 2015 May 22.

39.

Bacterial diversity along a 2600 km river continuum.

Savio D, Sinclair L, Ijaz UZ, Parajka J, Reischer GH, Stadler P, Blaschke AP, Blöschl G, Mach RL, Kirschner AK, Farnleitner AH, Eiler A.

Environ Microbiol. 2015 Dec;17(12):4994-5007. doi: 10.1111/1462-2920.12886. Epub 2015 Jun 11.

40.

Direct extraction of genomic DNA from maize with aqueous ionic liquid buffer systems for applications in genetically modified organisms analysis.

Gonzalez García E, Ressmann AK, Gaertner P, Zirbs R, Mach RL, Krska R, Bica K, Brunner K.

Anal Bioanal Chem. 2014 Dec;406(30):7773-84. doi: 10.1007/s00216-014-8204-y. Epub 2014 Nov 9.

PMID:
25381609
41.

Response to letter to the editor regarding "detection of the 35S promoter in transgenic maize via various isothermal amplification techniques: a practical approach".

Zahradnik C, Kolm C, Martzy R, Mach RL, Krska R, Farnleitner AH, Brunner K.

Anal Bioanal Chem. 2014 Dec;406(30):8061-2. doi: 10.1007/s00216-014-8183-z. Epub 2014 Oct 30. No abstract available.

PMID:
25354886
42.

A truncated form of the Carbon catabolite repressor 1 increases cellulase production in Trichoderma reesei.

Mello-de-Sousa TM, Gorsche R, Rassinger A, Poças-Fonseca MJ, Mach RL, Mach-Aigner AR.

Biotechnol Biofuels. 2014 Sep 11;7(1):129. doi: 10.1186/s13068-014-0129-3. eCollection 2014.

43.

Similar is not the same: differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi.

Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, Mach-Aigner AR, Mach RL, Heck AJR, Altelaar AFM, de Vries RP.

Fungal Genet Biol. 2014 Nov;72:73-81. doi: 10.1016/j.fgb.2014.07.007. Epub 2014 Jul 23.

PMID:
25064064
44.

Trichoderma atroviride transcriptional regulator Xyr1 supports the induction of systemic resistance in plants.

Reithner B, Mach-Aigner AR, Herrera-Estrella A, Mach RL.

Appl Environ Microbiol. 2014 Sep;80(17):5274-81. doi: 10.1128/AEM.00930-14. Epub 2014 Jun 20.

45.

Erythritol production on wheat straw using Trichoderma reesei.

Jovanović B, Mach RL, Mach-Aigner AR.

AMB Express. 2014 May 29;4:34. doi: 10.1186/s13568-014-0034-y. eCollection 2014.

46.

Detection of the 35S promoter in transgenic maize via various isothermal amplification techniques: a practical approach.

Zahradnik C, Kolm C, Martzy R, Mach RL, Krska R, Farnleitner AH, Brunner K.

Anal Bioanal Chem. 2014 Nov;406(27):6835-42. doi: 10.1007/s00216-014-7889-2. Epub 2014 Jun 1.

PMID:
24880871
47.

Detection of the food allergen celery via loop-mediated isothermal amplification technique.

Zahradnik C, Martzy R, Mach RL, Krska R, Farnleitner AH, Brunner K.

Anal Bioanal Chem. 2014 Nov;406(27):6827-33. doi: 10.1007/s00216-014-7873-x. Epub 2014 Jun 1.

PMID:
24880868
48.

A sensitive and robust method for automated on-line monitoring of enzymatic activities in water and water resources.

Ryzinska-Paier G, Lendenfeld T, Correa K, Stadler P, Blaschke AP, Mach RL, Stadler H, Kirschner AK, Farnleitner AH.

Water Sci Technol. 2014;69(6):1349-58. doi: 10.2166/wst.2014.032.

PMID:
24647204
49.

A highly sensitive in vivo footprinting technique for condition-dependent identification of cis elements.

Gorsche R, Jovanovic B, Gudynaite-Savitch L, Mach RL, Mach-Aigner AR.

Nucleic Acids Res. 2014 Jan;42(1):e1. doi: 10.1093/nar/gkt883. Epub 2013 Oct 3.

50.

Characterization of erythrose reductases from filamentous fungi.

Jovanović B, Mach RL, Mach-Aigner AR.

AMB Express. 2013 Aug 8;3(1):43. doi: 10.1186/2191-0855-3-43.

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