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Items: 12

1.

The Impact of TCR Signal Strength on Resident Memory T Cell Formation during Influenza Virus Infection.

Fiege JK, Stone IA, Fay EJ, Markman MW, Wijeyesinghe S, Macchietto MG, Shen S, Masopust D, Langlois RA.

J Immunol. 2019 Aug 15;203(4):936-945. doi: 10.4049/jimmunol.1900093. Epub 2019 Jun 24.

PMID:
31235552
2.

Hybrid Assembly of the Genome of the Entomopathogenic Nematode Steinernema carpocapsae Identifies the X-Chromosome.

Serra L, Macchietto M, Macias-Muñoz A, McGill CJ, Rodriguez IM, Rodriguez B, Murad R, Mortazavi A.

G3 (Bethesda). 2019 Aug 8;9(8):2687-2697. doi: 10.1534/g3.119.400180.

3.

Distinct antiviral signatures revealed by the magnitude and round of influenza virus replication in vivo.

Sjaastad LE, Fay EJ, Fiege JK, Macchietto MG, Stone IA, Markman MW, Shen S, Langlois RA.

Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):9610-9615. doi: 10.1073/pnas.1807516115. Epub 2018 Sep 4.

4.

Host- and Helminth-Derived Endocannabinoids That Have Effects on Host Immunity Are Generated during Infection.

Batugedara HM, Argueta D, Jang JC, Lu D, Macchietto M, Kaur J, Ge S, Dillman AR, DiPatrizio NV, Nair MG.

Infect Immun. 2018 Oct 25;86(11). pii: e00441-18. doi: 10.1128/IAI.00441-18. Print 2018 Nov.

5.

Corrigendum: SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, Martens L, Rodriguez-Navarro S, Moreno-Manzano V, Conesa A.

Genome Res. 2018 Jul;28(7):1096. doi: 10.1101/gr.239137.118. No abstract available.

6.

Adapting the Smart-seq2 Protocol for Robust Single Worm RNA-seq.

Serra L, Chang DZ, Macchietto M, Williams K, Murad R, Lu D, Dillman AR, Mortazavi A.

Bio Protoc. 2018 Feb 20;8(4). pii: e2729. doi: 10.21769/BioProtoc.2729.

7.

T Cells in Nonlymphoid Tissues Give Rise to Lymph-Node-Resident Memory T Cells.

Beura LK, Wijeyesinghe S, Thompson EA, Macchietto MG, Rosato PC, Pierson MJ, Schenkel JM, Mitchell JS, Vezys V, Fife BT, Shen S, Masopust D.

Immunity. 2018 Feb 20;48(2):327-338.e5. doi: 10.1016/j.immuni.2018.01.015.

8.

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification.

Tardaguila M, de la Fuente L, Marti C, Pereira C, Pardo-Palacios FJ, Del Risco H, Ferrell M, Mellado M, Macchietto M, Verheggen K, Edelmann M, Ezkurdia I, Vazquez J, Tress M, Mortazavi A, Martens L, Rodriguez-Navarro S, Moreno-Manzano V, Conesa A.

Genome Res. 2018 Feb 9. doi: 10.1101/gr.222976.117. [Epub ahead of print] Erratum in: Genome Res. 2018 Jul;28(7):1096.

9.

Comparative Transcriptomics of Steinernema and Caenorhabditis Single Embryos Reveals Orthologous Gene Expression Convergence during Late Embryogenesis.

Macchietto M, Angdembey D, Heidarpour N, Serra L, Rodriguez B, El-Ali N, Mortazavi A.

Genome Biol Evol. 2017 Oct 1;9(10):2681-2696. doi: 10.1093/gbe/evx195.

10.

Activated entomopathogenic nematode infective juveniles release lethal venom proteins.

Lu D, Macchietto M, Chang D, Barros MM, Baldwin J, Mortazavi A, Dillman AR.

PLoS Pathog. 2017 Apr 20;13(4):e1006302. doi: 10.1371/journal.ppat.1006302. eCollection 2017 Apr.

11.

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks.

Dillman AR, Macchietto M, Porter CF, Rogers A, Williams B, Antoshechkin I, Lee MM, Goodwin Z, Lu X, Lewis EE, Goodrich-Blair H, Stock SP, Adams BJ, Sternberg PW, Mortazavi A.

Genome Biol. 2015 Sep 21;16:200. doi: 10.1186/s13059-015-0746-6.

12.

The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle.

Srinivasan J, Dillman AR, Macchietto MG, Heikkinen L, Lakso M, Fracchia KM, Antoshechkin I, Mortazavi A, Wong G, Sternberg PW.

Genetics. 2013 Apr;193(4):1279-95. doi: 10.1534/genetics.112.148809. Epub 2013 Feb 14.

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