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Accessing a Russian Wheat Aphid Resistance Gene in Bread Wheat by Long-Read Technologies.

Tulpová Z, Toegelová H, Lapitan NLV, Peairs FB, Macas J, Novák P, Lukaszewski AJ, Kopecký D, Mazáčová M, Vrána J, Holušová K, Leroy P, Doležel J, Šimková H.

Plant Genome. 2019 Jun;12(2). doi: 10.3835/plantgenome2018.09.0065.


The Dark Matter of Large Cereal Genomes: Long Tandem Repeats.

Kapustová V, Tulpová Z, Toegelová H, Novák P, Macas J, Karafiátová M, Hřibová E, Doležel J, Šimková H.

Int J Mol Sci. 2019 May 20;20(10). pii: E2483. doi: 10.3390/ijms20102483.


Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda.

Finke A, Mandáková T, Nawaz K, Vu GTH, Novák P, Macas J, Lysak MA, Pecinka A.

Plant J. 2019 May 10. doi: 10.1111/tpj.14380. [Epub ahead of print]


Nondisjunction and unequal spindle organization accompany the drive of Aegilops speltoides B chromosomes.

Wu D, Ruban A, Fuchs J, Macas J, Novák P, Vaio M, Zhou Y, Houben A.

New Phytol. 2019 Aug;223(3):1340-1352. doi: 10.1111/nph.15875. Epub 2019 May 27.


Low wnt/β-catenin signaling determines leaky vessels in the subfornical organ and affects water homeostasis in mice.

Benz F, Wichitnaowarat V, Lehmann M, Germano RF, Mihova D, Macas J, Adams RH, Taketo MM, Plate KH, Guérit S, Vanhollebeke B, Liebner S.

Elife. 2019 Apr 1;8. pii: e43818. doi: 10.7554/eLife.43818.


Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification.

Neumann P, Novák P, Hoštáková N, Macas J.

Mob DNA. 2019 Jan 3;10:1. doi: 10.1186/s13100-018-0144-1. eCollection 2019.


Rhodocetin-αβ selectively breaks the endothelial barrier of the tumor vasculature in HT1080 fibrosarcoma and A431 epidermoid carcinoma tumor models.

Niland S, Komljenovic D, Macas J, Bracht T, Bäuerle T, Liebner S, Eble JA.

Oncotarget. 2018 Apr 27;9(32):22406-22422. doi: 10.18632/oncotarget.25032. eCollection 2018 Apr 27.


Satellite DNA in Vicia faba is characterized by remarkable diversity in its sequence composition, association with centromeres, and replication timing.

Ávila Robledillo L, Koblížková A, Novák P, Böttinger K, Vrbová I, Neumann P, Schubert I, Macas J.

Sci Rep. 2018 Apr 11;8(1):5838. doi: 10.1038/s41598-018-24196-3.


Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae).

Mccann J, Jang TS, Macas J, Schneeweiss GM, Matzke NJ, Novák P, Stuessy TF, Villaseñor JL, Weiss-Schneeweiss H.

Syst Biol. 2018 Nov 1;67(6):1010-1024. doi: 10.1093/sysbio/syy024.


An In Vivo Blood-brain Barrier Permeability Assay in Mice Using Fluorescently Labeled Tracers.

Devraj K, Guérit S, Macas J, Reiss Y.

J Vis Exp. 2018 Feb 26;(132). doi: 10.3791/57038.


Karyotypes and Distribution of Tandem Repeat Sequences in Brassica nigra Determined by Fluorescence in situ Hybridization.

Wang GX, He QY, Macas J, Novák P, Neumann P, Meng DX, Zhao H, Guo N, Han S, Zong M, Jin WW, Liu F.

Cytogenet Genome Res. 2017;152(3):158-165. doi: 10.1159/000479179. Epub 2017 Aug 16.


TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads.

Novák P, Ávila Robledillo L, Koblížková A, Vrbová I, Neumann P, Macas J.

Nucleic Acids Res. 2017 Jul 7;45(12):e111. doi: 10.1093/nar/gkx257.


Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species.

Ribeiro T, Marques A, Novák P, Schubert V, Vanzela AL, Macas J, Houben A, Pedrosa-Harand A.

Chromosoma. 2017 Mar;126(2):325-335. doi: 10.1007/s00412-016-0616-3. Epub 2016 Sep 19.


Nucleoside diphosphate kinase B regulates angiogenic responses in the endothelium via caveolae formation and c-Src-mediated caveolin-1 phosphorylation.

Gross S, Devraj K, Feng Y, Macas J, Liebner S, Wieland T.

J Cereb Blood Flow Metab. 2017 Jul;37(7):2471-2484. doi: 10.1177/0271678X16669365. Epub 2016 Jan 1.


Repeat Composition of CenH3-chromatin and H3K9me2-marked heterochromatin in Sugar Beet (Beta vulgaris).

Kowar T, Zakrzewski F, Macas J, Kobližková A, Viehoever P, Weisshaar B, Schmidt T.

BMC Plant Biol. 2016 May 26;16(1):120. doi: 10.1186/s12870-016-0805-5.


Plantago lagopus B Chromosome Is Enriched in 5S rDNA-Derived Satellite DNA.

Kumke K, Macas J, Fuchs J, Altschmied L, Kour J, Dhar MK, Houben A.

Cytogenet Genome Res. 2016;148(1):68-73. doi: 10.1159/000444873. Epub 2016 May 13.


Epigenetic Histone Marks of Extended Meta-Polycentric Centromeres of Lathyrus and Pisum Chromosomes.

Neumann P, Schubert V, Fuková I, Manning JE, Houben A, Macas J.

Front Plant Sci. 2016 Mar 1;7:234. doi: 10.3389/fpls.2016.00234. eCollection 2016.


Angiopoietin-2-induced blood-brain barrier compromise and increased stroke size are rescued by VE-PTP-dependent restoration of Tie2 signaling.

Gurnik S, Devraj K, Macas J, Yamaji M, Starke J, Scholz A, Sommer K, Di Tacchio M, Vutukuri R, Beck H, Mittelbronn M, Foerch C, Pfeilschifter W, Liebner S, Peters KG, Plate KH, Reiss Y.

Acta Neuropathol. 2016 May;131(5):753-73. doi: 10.1007/s00401-016-1551-3. Epub 2016 Mar 1.


In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae.

Macas J, Novák P, Pellicer J, Čížková J, Koblížková A, Neumann P, Fuková I, Doležel J, Kelly LJ, Leitch IJ.

PLoS One. 2015 Nov 25;10(11):e0143424. doi: 10.1371/journal.pone.0143424. eCollection 2015.


Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima.

Boutte J, Aliaga B, Lima O, Ferreira de Carvalho J, Ainouche A, Macas J, Rousseau-Gueutin M, Coriton O, Ainouche M, Salmon A.

G3 (Bethesda). 2015 Nov 3;6(1):29-40. doi: 10.1534/g3.115.023242.


Holocentromeres in Rhynchospora are associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin.

Marques A, Ribeiro T, Neumann P, Macas J, Novák P, Schubert V, Pellino M, Fuchs J, Ma W, Kuhlmann M, Brandt R, Vanzela AL, Beseda T, Šimková H, Pedrosa-Harand A, Houben A.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13633-8. doi: 10.1073/pnas.1512255112. Epub 2015 Oct 21. Erratum in: Proc Natl Acad Sci U S A. 2015 Dec 1;112(48):E6720.


Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea.

Tran TD, Cao HX, Jovtchev G, Neumann P, Novák P, Fojtová M, Vu GT, Macas J, Fajkus J, Schubert I, Fuchs J.

Plant J. 2015 Dec;84(6):1087-99. doi: 10.1111/tpj.13058. Epub 2015 Nov 30.


Chromatin organization and cytological features of carnivorous Genlisea species with large genome size differences.

Tran TD, Cao HX, Jovtchev G, Novák P, Vu GT, Macas J, Schubert I, Fuchs J.

Front Plant Sci. 2015 Aug 20;6:613. doi: 10.3389/fpls.2015.00613. eCollection 2015.


A Set of Cytogenetic Markers Allows the Precise Identification of All A-Genome Chromosomes in Diploid and Polyploid Wheat.

Badaeva ED, Amosova AV, Goncharov NP, Macas J, Ruban AS, Grechishnikova IV, Zoshchuk SA, Houben A.

Cytogenet Genome Res. 2015;146(1):71-9. doi: 10.1159/000433458. Epub 2015 Jul 4.


Extracellular vesicle-mediated transfer of functional RNA in the tumor microenvironment.

Ridder K, Sevko A, Heide J, Dams M, Rupp AK, Macas J, Starmann J, Tjwa M, Plate KH, Sültmann H, Altevogt P, Umansky V, Momma S.

Oncoimmunology. 2015 Mar 19;4(6):e1008371. eCollection 2015 Jun.


Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size.

Kelly LJ, Renny-Byfield S, Pellicer J, Macas J, Novák P, Neumann P, Lysak MA, Day PD, Berger M, Fay MF, Nichols RA, Leitch AR, Leitch IJ.

New Phytol. 2015 Oct;208(2):596-607. doi: 10.1111/nph.13471. Epub 2015 Jun 8.


Centromeres Off the Hook: Massive Changes in Centromere Size and Structure Following Duplication of CenH3 Gene in Fabeae Species.

Neumann P, Pavlíková Z, Koblížková A, Fuková I, Jedličková V, Novák P, Macas J.

Mol Biol Evol. 2015 Jul;32(7):1862-79. doi: 10.1093/molbev/msv070. Epub 2015 Mar 13.


Genes on B chromosomes: old questions revisited with new tools.

Banaei-Moghaddam AM, Martis MM, Macas J, Gundlach H, Himmelbach A, Altschmied L, Mayer KF, Houben A.

Biochim Biophys Acta. 2015 Jan;1849(1):64-70. doi: 10.1016/j.bbagrm.2014.11.007. Epub 2014 Dec 3. Review.


Genomic repeat abundances contain phylogenetic signal.

Dodsworth S, Chase MW, Kelly LJ, Leitch IJ, Macas J, Novák P, Piednoël M, Weiss-Schneeweiss H, Leitch AR.

Syst Biol. 2015 Jan;64(1):112-26. doi: 10.1093/sysbio/syu080. Epub 2014 Sep 25.


Differential amplification of satellite PaB6 in chromosomally hypervariable Prospero autumnale complex (Hyacinthaceae).

Emadzade K, Jang TS, Macas J, Kovařík A, Novák P, Parker J, Weiss-Schneeweiss H.

Ann Bot. 2014 Dec;114(8):1597-608. doi: 10.1093/aob/mcu178. Epub 2014 Aug 28.


Genome-wide analysis of repeat diversity across the family Musaceae.

Novák P, Hřibová E, Neumann P, Koblížková A, Doležel J, Macas J.

PLoS One. 2014 Jun 16;9(6):e98918. doi: 10.1371/journal.pone.0098918. eCollection 2014.


Extracellular vesicle-mediated transfer of genetic information between the hematopoietic system and the brain in response to inflammation.

Ridder K, Keller S, Dams M, Rupp AK, Schlaudraff J, Del Turco D, Starmann J, Macas J, Karpova D, Devraj K, Depboylu C, Landfried B, Arnold B, Plate KH, Höglinger G, Sültmann H, Altevogt P, Momma S.

PLoS Biol. 2014 Jun 3;12(6):e1001874. doi: 10.1371/journal.pbio.1001874. eCollection 2014 Jun. Erratum in: PLoS Biol. 2018 Mar 12;16(3):e1002623.


Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres.

Zhang H, Koblížková A, Wang K, Gong Z, Oliveira L, Torres GA, Wu Y, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2014 Apr;26(4):1436-1447. Epub 2014 Apr 11.


Generation of neuronal progenitor cells in response to tumors in the human brain.

Macas J, Ku MC, Nern C, Xu Y, Bühler H, Remke M, Synowitz M, Franz K, Seifert V, Plate KH, Kettenmann H, Glass R, Momma S.

Stem Cells. 2014 Jan;32(1):244-57. doi: 10.1002/stem.1581.


Flow sorting and sequencing meadow fescue chromosome 4F.

Kopecký D, Martis M, Číhalíková J, Hřibová E, Vrána J, Bartoš J, Kopecká J, Cattonaro F, Stočes Š, Novák P, Neumann P, Macas J, Šimková H, Studer B, Asp T, Baird JH, Navrátil P, Karafiátová M, Kubaláková M, Šafář J, Mayer K, Doležel J.

Plant Physiol. 2013 Nov;163(3):1323-37. doi: 10.1104/pp.113.224105. Epub 2013 Oct 4.


High-copy sequences reveal distinct evolution of the rye B chromosome.

Klemme S, Banaei-Moghaddam AM, Macas J, Wicker T, Novák P, Houben A.

New Phytol. 2013 Jul;199(2):550-8. doi: 10.1111/nph.12289. Epub 2013 Apr 24.


Contrasting patterns of transposable element and satellite distribution on sex chromosomes (XY1Y2) in the dioecious plant Rumex acetosa.

Steflova P, Tokan V, Vogel I, Lexa M, Macas J, Novak P, Hobza R, Vyskot B, Kejnovsky E.

Genome Biol Evol. 2013;5(4):769-82. doi: 10.1093/gbe/evt049.


Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences.

Renny-Byfield S, Kovarik A, Kelly LJ, Macas J, Novak P, Chase MW, Nichols RA, Pancholi MR, Grandbastien MA, Leitch AR.

Plant J. 2013 Jun;74(5):829-39. doi: 10.1111/tpj.12168. Epub 2013 Apr 5.


RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads.

Novák P, Neumann P, Pech J, Steinhaisl J, Macas J.

Bioinformatics. 2013 Mar 15;29(6):792-3. doi: 10.1093/bioinformatics/btt054. Epub 2013 Feb 1.


Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.

Matyášek R, Renny-Byfield S, Fulneček J, Macas J, Grandbastien MA, Nichols R, Leitch A, Kovařík A.

BMC Genomics. 2012 Dec 23;13:722. doi: 10.1186/1471-2164-13-722.


Nondisjunction in favor of a chromosome: the mechanism of rye B chromosome drive during pollen mitosis.

Banaei-Moghaddam AM, Schubert V, Kumke K, Weiβ O, Klemme S, Nagaki K, Macas J, González-Sánchez M, Heredia V, Gómez-Revilla D, González-García M, Vega JM, Puertas MJ, Houben A.

Plant Cell. 2012 Oct;24(10):4124-34. doi: 10.1105/tpc.112.105270. Epub 2012 Oct 26.


The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.

Heckmann S, Macas J, Kumke K, Fuchs J, Schubert V, Ma L, Novák P, Neumann P, Taudien S, Platzer M, Houben A.

Plant J. 2013 Feb;73(4):555-65. doi: 10.1111/tpj.12054. Epub 2012 Dec 12.


Repeatless and repeat-based centromeres in potato: implications for centromere evolution.

Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J.

Plant Cell. 2012 Sep;24(9):3559-74. doi: 10.1105/tpc.112.100511. Epub 2012 Sep 11.


Endothelial Wnt/β-catenin signaling inhibits glioma angiogenesis and normalizes tumor blood vessels by inducing PDGF-B expression.

Reis M, Czupalla CJ, Ziegler N, Devraj K, Zinke J, Seidel S, Heck R, Thom S, Macas J, Bockamp E, Fruttiger M, Taketo MM, Dimmeler S, Plate KH, Liebner S.

J Exp Med. 2012 Aug 27;209(9):1611-27. doi: 10.1084/jem.20111580. Epub 2012 Aug 20.


Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences.

Martis MM, Klemme S, Banaei-Moghaddam AM, Blattner FR, Macas J, Schmutzer T, Scholz U, Gundlach H, Wicker T, Šimková H, Novák P, Neumann P, Kubaláková M, Bauer E, Haseneyer G, Fuchs J, Doležel J, Stein N, Mayer KF, Houben A.

Proc Natl Acad Sci U S A. 2012 Aug 14;109(33):13343-6. doi: 10.1073/pnas.1204237109. Epub 2012 Jul 30.


Stretching the rules: monocentric chromosomes with multiple centromere domains.

Neumann P, Navrátilová A, Schroeder-Reiter E, Koblížková A, Steinbauerová V, Chocholová E, Novák P, Wanner G, Macas J.

PLoS Genet. 2012;8(6):e1002777. doi: 10.1371/journal.pgen.1002777. Epub 2012 Jun 21.


Next-generation sequencing reveals the impact of repetitive DNA across phylogenetically closely related genomes of Orobanchaceae.

Piednoël M, Aberer AJ, Schneeweiss GM, Macas J, Novak P, Gundlach H, Temsch EM, Renner SS.

Mol Biol Evol. 2012 Nov;29(11):3601-11. doi: 10.1093/molbev/mss168. Epub 2012 Jun 21.


Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.

Renny-Byfield S, Kovařík A, Chester M, Nichols RA, Macas J, Novák P, Leitch AR.

PLoS One. 2012;7(5):e36963. doi: 10.1371/journal.pone.0036963. Epub 2012 May 14.


A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons.

Steinbauerová V, Neumann P, Novák P, Macas J.

Genetica. 2011 Dec;139(11-12):1543-55. doi: 10.1007/s10709-012-9654-9. Epub 2012 Apr 29.


Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among vesper bats.

Pagán HJ, Macas J, Novák P, McCulloch ES, Stevens RD, Ray DA.

Genome Biol Evol. 2012;4(4):575-85. doi: 10.1093/gbe/evs038. Epub 2012 Apr 4.

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