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Items: 42

1.

Ancient DNA of the extinct Jamaican monkey Xenothrix reveals extreme insular change within a morphologically conservative radiation.

Woods R, Turvey ST, Brace S, MacPhee RDE, Barnes I.

Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12769-12774. doi: 10.1073/pnas.1808603115. Epub 2018 Nov 12.

PMID:
30420497
2.

A comprehensive genomic history of extinct and living elephants.

Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D.

Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):E2566-E2574. doi: 10.1073/pnas.1720554115. Epub 2018 Feb 26.

3.

A mitogenomic timetree for Darwin's enigmatic South American mammal Macrauchenia patachonica.

Westbury M, Baleka S, Barlow A, Hartmann S, Paijmans JLA, Kramarz A, Forasiepi AM, Bond M, Gelfo JN, Reguero MA, López-Mendoza P, Taglioretti M, Scaglia F, Rinderknecht A, Jones W, Mena F, Billet G, de Muizon C, Aguilar JL, MacPhee RDE, Hofreiter M.

Nat Commun. 2017 Jun 27;8:15951. doi: 10.1038/ncomms15951.

4.

The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis.

Chang D, Knapp M, Enk J, Lippold S, Kircher M, Lister A, MacPhee RD, Widga C, Czechowski P, Sommer R, Hodges E, Stümpel N, Barnes I, Dalén L, Derevianko A, Germonpré M, Hillebrand-Voiculescu A, Constantin S, Kuznetsova T, Mol D, Rathgeber T, Rosendahl W, Tikhonov AN, Willerslev E, Hannon G, Lalueza-Fox C, Joger U, Poinar H, Hofreiter M, Shapiro B.

Sci Rep. 2017 Mar 22;7:44585. doi: 10.1038/srep44585.

5.

Fossil and genomic evidence constrains the timing of bison arrival in North America.

Froese D, Stiller M, Heintzman PD, Reyes AV, Zazula GD, Soares AE, Meyer M, Hall E, Jensen BJ, Arnold LJ, MacPhee RD, Shapiro B.

Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3457-3462. doi: 10.1073/pnas.1620754114. Epub 2017 Mar 13.

6.

Evolutionary History of the Nesophontidae, the Last Unplaced Recent Mammal Family.

Brace S, Thomas JA, Dalén L, Burger J, MacPhee RD, Barnes I, Turvey ST.

Mol Biol Evol. 2016 Dec;33(12):3095-3103. Epub 2016 Sep 13.

PMID:
27624716
7.

The phylogenetic affinities of the extinct glyptodonts.

Delsuc F, Gibb GC, Kuch M, Billet G, Hautier L, Southon J, Rouillard JM, Fernicola JC, Vizcaíno SF, MacPhee RD, Poinar HN.

Curr Biol. 2016 Feb 22;26(4):R155-6. doi: 10.1016/j.cub.2016.01.039.

8.

Evolutionary Relationships among Extinct and Extant Sloths: The Evidence of Mitogenomes and Retroviruses.

Slater GJ, Cui P, Forasiepi AM, Lenz D, Tsangaras K, Voirin B, de Moraes-Barros N, MacPhee RD, Greenwood AD.

Genome Biol Evol. 2016 Feb 14;8(3):607-21. doi: 10.1093/gbe/evw023.

9.

Interordinal gene capture, the phylogenetic position of Steller's sea cow based on molecular and morphological data, and the macroevolutionary history of Sirenia.

Springer MS, Signore AV, Paijmans JL, Vélez-Juarbe J, Domning DP, Bauer CE, He K, Crerar L, Campos PF, Murphy WJ, Meredith RW, Gatesy J, Willerslev E, MacPhee RD, Hofreiter M, Campbell KL.

Mol Phylogenet Evol. 2015 Oct;91:178-93. doi: 10.1016/j.ympev.2015.05.022. Epub 2015 Jun 4.

PMID:
26050523
10.

Genomic Data from Extinct North American Camelops Revise Camel Evolutionary History.

Heintzman PD, Zazula GD, Cahill JA, Reyes AV, MacPhee RD, Shapiro B.

Mol Biol Evol. 2015 Sep;32(9):2433-40. doi: 10.1093/molbev/msv128. Epub 2015 Jun 2.

11.

Ancient proteins resolve the evolutionary history of Darwin's South American ungulates.

Welker F, Collins MJ, Thomas JA, Wadsley M, Brace S, Cappellini E, Turvey ST, Reguero M, Gelfo JN, Kramarz A, Burger J, Thomas-Oates J, Ashford DA, Ashton PD, Rowsell K, Porter DM, Kessler B, Fischer R, Baessmann C, Kaspar S, Olsen JV, Kiley P, Elliott JA, Kelstrup CD, Mullin V, Hofreiter M, Willerslev E, Hublin JJ, Orlando L, Barnes I, MacPhee RD.

Nature. 2015 Jun 4;522(7554):81-4. doi: 10.1038/nature14249. Epub 2015 Mar 18.

12.

American mastodon extirpation in the Arctic and Subarctic predates human colonization and terminal Pleistocene climate change.

Zazula GD, MacPhee RD, Metcalfe JZ, Reyes AV, Brock F, Druckenmiller PS, Groves P, Harington CR, Hodgins GW, Kunz ML, Longstaffe FJ, Mann DH, McDonald HG, Nalawade-Chavan S, Southon JR.

Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18460-5. doi: 10.1073/pnas.1416072111. Epub 2014 Dec 1.

13.

Fifty thousand years of Arctic vegetation and megafaunal diet.

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P.

Nature. 2014 Feb 6;506(7486):47-51. doi: 10.1038/nature12921.

PMID:
24499916
14.

Evolutionary patterns of bone histology and bone compactness in xenarthran mammal long bones.

Straehl FR, Scheyer TM, Forasiepi AM, MacPhee RD, Sánchez-Villagra MR.

PLoS One. 2013 Jul 9;8(7):e69275. doi: 10.1371/journal.pone.0069275. Print 2013.

15.

Infectious disease, endangerment, and extinction.

Macphee RD, Greenwood AD.

Int J Evol Biol. 2013;2013:571939. doi: 10.1155/2013/571939. Epub 2013 Jan 16.

16.

Case study: ancient sloth DNA recovered from hairs preserved in paleofeces.

Clack AA, Macphee RD, Poinar HN.

Methods Mol Biol. 2012;840:51-6. doi: 10.1007/978-1-61779-516-9_7.

PMID:
22237521
17.

Human knee synovial fluid cytokines correlated with grade of knee osteoarthritis--a pilot study.

Vangsness CT Jr, Burke WS, Narvy SJ, MacPhee RD, Fedenko AN.

Bull NYU Hosp Jt Dis. 2011;69(2):122-7.

18.

Mylodon darwinii DNA sequences from ancient fecal hair shafts.

Clack AA, MacPhee RD, Poinar HN.

Ann Anat. 2012 Jan 20;194(1):26-30. doi: 10.1016/j.aanat.2011.05.001. Epub 2011 May 17. Review.

PMID:
21640569
19.

Ancient DNA reveals late survival of mammoth and horse in interior Alaska.

Haile J, Froese DG, Macphee RD, Roberts RG, Arnold LJ, Reyes AV, Rasmussen M, Nielsen R, Brook BW, Robinson S, Demuro M, Gilbert MT, Munch K, Austin JJ, Cooper A, Barnes I, Möller P, Willerslev E.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22352-7. doi: 10.1073/pnas.0912510106. Epub 2009 Dec 17.

20.

Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease.

Wyatt KB, Campos PF, Gilbert MT, Kolokotronis SO, Hynes WH, DeSalle R, Ball SJ, Daszak P, MacPhee RD, Greenwood AD.

PLoS One. 2008;3(11):e3602. doi: 10.1371/journal.pone.0003602. Epub 2008 Nov 5. Erratum in: PLoS ONE. 2009;4(1). doi: doi.org/10.1371/annotation/9fbe9687-682e-4010-97e4-139b33343d34. Ball, Stanley J [added].

21.

Out of America: ancient DNA evidence for a new world origin of late quaternary woolly mammoths.

Debruyne R, Chu G, King CE, Bos K, Kuch M, Schwarz C, Szpak P, Gröcke DR, Matheus P, Zazula G, Guthrie D, Froese D, Buigues B, de Marliave C, Flemming C, Poinar D, Fisher D, Southon J, Tikhonov AN, MacPhee RD, Poinar HN.

Curr Biol. 2008 Sep 9;18(17):1320-6. doi: 10.1016/j.cub.2008.07.061.

22.

Detection of mitochondrial insertions in the nucleus (NuMts) of Pleistocene and modern muskoxen.

Kolokotronis SO, Macphee RD, Greenwood AD.

BMC Evol Biol. 2007 Apr 27;7:67.

23.

The delayed rise of present-day mammals.

Bininda-Emonds OR, Cardillo M, Jones KE, MacPhee RD, Beck RM, Grenyer R, Price SA, Vos RA, Gittleman JL, Purvis A.

Nature. 2007 Mar 29;446(7135):507-12. Erratum in: Nature. 2008 Nov 13;456(7219):274.

PMID:
17392779
24.

A nuclear DNA phylogeny of the woolly mammoth (Mammuthus primigenius).

Capelli C, MacPhee RD, Roca AL, Brisighelli F, Georgiadis N, O'Brien SJ, Greenwood AD.

Mol Phylogenet Evol. 2006 Aug;40(2):620-7. Epub 2006 May 2. No abstract available.

PMID:
16631387
25.

Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.

Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC.

Science. 2006 Jan 20;311(5759):392-4. Epub 2005 Dec 20.

26.

Late Quaternary loss of genetic diversity in muskox (Ovibos).

MacPhee RD, Tikhonov AN, Mol D, Greenwood AD.

BMC Evol Biol. 2005 Oct 6;5:49.

27.

Asynchronous extinction of late Quaternary sloths on continents and islands.

Steadman DW, Martin PS, MacPhee RD, Jull AJ, McDonald HG, Woods CA, Iturralde-Vinent M, Hodgins GW.

Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11763-8. Epub 2005 Aug 5.

28.

Characterization of an endogenous retrovirus class in elephants and their relatives.

Greenwood AD, Englbrecht CC, MacPhee RD.

BMC Evol Biol. 2004 Oct 11;4:38.

29.

Evolution of endogenous retrovirus-like elements of the woolly mammoth (Mammuthus primigenius) and its relatives.

Greenwood AD, Lee F, Capelli C, DeSalle R, Tikhonov A, Marx PA, MacPhee RD.

Mol Biol Evol. 2001 May;18(5):840-7.

PMID:
11319267
30.

Extinction: complexity of assessing risk.

MacPhee RD, Flemming C.

Science. 2001 Apr 13;292(5515):217-8. No abstract available.

PMID:
11305308
31.
32.

The quaternary cuban platyrrhine Paralouatta varonai and the origin of Antillean monkeys.

Horovitz I, MacPhee RD.

J Hum Evol. 1999 Jan;36(1):33-68.

PMID:
9924133
33.

T cell receptor (TCR) BV gene repertoires and clonal expansions of CD4 cells in patients with HIV infections.

Roglic M, Macphee RD, Duncan SR, Sattler FR, Theofilopoulos AN.

Clin Exp Immunol. 1997 Jan;107(1):21-30.

34.
35.
36.

Use of plasma somatomedin-C/insulin-like growth factor I measurements to monitor the response to nutritional repletion in malnourished patients.

Clemmons DR, Underwood LE, Dickerson RN, Brown RO, Hak LJ, MacPhee RD, Heizer WD.

Am J Clin Nutr. 1985 Feb;41(2):191-8.

PMID:
3918429
37.

New Palaeogene primate basicrania and the definition of the order Primates.

MacPhee RD, Cartmill M, Gingerich PD.

Nature. 1983 Feb 10;301(5900):509-11.

38.

A new fossil cebine from Hispaniola.

MacPhee RD, Woods CA.

Am J Phys Anthropol. 1982 Aug;58(4):419-36.

PMID:
7124936
39.

Entotympanics, ontogeny and primates.

MacPhee RD.

Folia Primatol (Basel). 1979;31(1-2):23-47.

PMID:
488867
40.

Ontogeny of the ectotympanic-petrosal plate relationship in strepsirhine prosimians.

MacPhee RD.

Folia Primatol (Basel). 1977;27(4):245-83.

PMID:
407138
41.

Relationship of nitrogen oxides in auto exhaust to eye irritation--further results of chamber studies.

Hamming WJ, MacPhee RD.

Atmos Environ. 1967 Sep;1(5):577-84. No abstract available.

PMID:
4168649
42.

Contaminant concentrations in the atmosphere of Los Angeles County.

HAMMING WJ, MACPHEE RD, TAYLOR JR.

J Air Pollut Control Assoc. 1960 Feb;10:7-16. No abstract available.

PMID:
14399341

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