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Items: 19

1.

Shared genome analyses of notable listeriosis outbreaks, highlighting the critical importance of epidemiological evidence, input datasets and interpretation criteria.

Reimer A, Weedmark K, Petkau A, Peterson CL, Walker M, Knox N, Kent H, Mabon P, Berry C, Tyler S, Tschetter L, Jerome M, Allen V, Hoang L, Bekal S, Clark C, Nadon C, Van Domselaar G, Pagotto F, Graham M, Farber J, Gilmour M.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000237. Epub 2019 Jan 16.

2.

Neptune: a bioinformatics tool for rapid discovery of genomic variation in bacterial populations.

Marinier E, Zaheer R, Berry C, Weedmark KA, Domaratzki M, Mabon P, Knox NC, Reimer AR, Graham MR, Chui L, Patterson-Fortin L, Zhang J, Pagotto F, Farber J, Mahony J, Seyer K, Bekal S, Tremblay C, Isaac-Renton J, Prystajecky N, Chen J, Slade P, Van Domselaar G.

Nucleic Acids Res. 2017 Oct 13;45(18):e159. doi: 10.1093/nar/gkx702.

3.

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.

Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G.

Microb Genom. 2017 Jun 8;3(6):e000116. doi: 10.1099/mgen.0.000116. eCollection 2017 Jun 30.

4.

Bacillus cereus Biovar Anthracis Causing Anthrax in Sub-Saharan Africa-Chromosomal Monophyly and Broad Geographic Distribution.

Antonation KS, Gr├╝tzmacher K, Dupke S, Mabon P, Zimmermann F, Lankester F, Peller T, Feistner A, Todd A, Herbinger I, de Nys HM, Muyembe-Tamfun JJ, Karhemere S, Wittig RM, Couacy-Hymann E, Grunow R, Calvignac-Spencer S, Corbett CR, Klee SR, Leendertz FH.

PLoS Negl Trop Dis. 2016 Sep 8;10(9):e0004923. doi: 10.1371/journal.pntd.0004923. eCollection 2016 Sep.

5.

A Study of the Infant Nasal Microbiome Development over the First Year of Life and in Relation to Their Primary Adult Caregivers Using cpn60 Universal Target (UT) as a Phylogenetic Marker.

Peterson SW, Knox NC, Golding GR, Tyler SD, Tyler AD, Mabon P, Embree JE, Fleming F, Fanella S, Van Domselaar G, Mulvey MR, Graham MR.

PLoS One. 2016 Mar 28;11(3):e0152493. doi: 10.1371/journal.pone.0152493. eCollection 2016.

6.

Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis.

Tyler AD, Christianson S, Knox NC, Mabon P, Wolfe J, Van Domselaar G, Graham MR, Sharma MK.

PLoS One. 2016 Feb 5;11(2):e0148676. doi: 10.1371/journal.pone.0148676. eCollection 2016.

7.

Clostridium botulinum Group II Isolate Phylogenomic Profiling Using Whole-Genome Sequence Data.

Weedmark KA, Mabon P, Hayden KL, Lambert D, Van Domselaar G, Austin JW, Corbett CR.

Appl Environ Microbiol. 2015 Sep 1;81(17):5938-48. doi: 10.1128/AEM.01155-15. Epub 2015 Jun 26.

8.

Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient.

Tracz DM, Gilmour MW, Mabon P, Beniac DR, Hoang L, Kibsey P, Van Domselaar G, Tabor H, Westmacott GR, Corbett CR, Bernard KA.

Int J Syst Evol Microbiol. 2015 Jun;65(Pt 6):1959-66. doi: 10.1099/ijs.0.000207. Epub 2015 Mar 25.

PMID:
25807976
9.

Two novel toxin variants revealed by whole-genome sequencing of 175 Clostridium botulinum type E strains.

Weedmark KA, Lambert DL, Mabon P, Hayden KL, Urfano CJ, Leclair D, Van Domselaar G, Austin JW, Corbett CR.

Appl Environ Microbiol. 2014 Oct;80(20):6334-45. doi: 10.1128/AEM.01573-14. Epub 2014 Aug 8.

10.

Sylvatic plague in a Canadian black-tailed prairie dog (Cynomys ludovicianus).

Antonation KS, Shury TK, Bollinger TK, Olson A, Mabon P, Van Domselaar G, Corbett CR.

J Wildl Dis. 2014 Jul;50(3):699-702. doi: 10.7589/2013-08-215. Epub 2014 May 7.

PMID:
24807359
11.

DNA sequence heterogeneity of Campylobacter jejuni CJIE4 prophages and expression of prophage genes.

Clark CG, Chong PM, McCorrister SJ, Mabon P, Walker M, Westmacott GR.

PLoS One. 2014 Apr 22;9(4):e95349. doi: 10.1371/journal.pone.0095349. eCollection 2014.

12.

Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.

Olson AB, Kent H, Sibley CD, Grinwis ME, Mabon P, Ouellette C, Tyson S, Graham M, Tyler SD, Van Domselaar G, Surette MG, Corbett CR.

BMC Genomics. 2013 Dec 17;14:895. doi: 10.1186/1471-2164-14-895.

13.

whole-genome sequence of livestock-associated st398 methicillin-resistant staphylococcus aureus Isolated from Humans in Canada.

Golding GR, Bryden L, Levett PN, McDonald RR, Wong A, Graham MR, Tyler S, Van Domselaar G, Mabon P, Kent H, Butaye P, Smith TC, Kadlec K, Schwarz S, Weese SJ, Mulvey MR.

J Bacteriol. 2012 Dec;194(23):6627-8. doi: 10.1128/JB.01680-12.

14.

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.

Reimer AR, Van Domselaar G, Stroika S, Walker M, Kent H, Tarr C, Talkington D, Rowe L, Olsen-Rasmussen M, Frace M, Sammons S, Dahourou GA, Boncy J, Smith AM, Mabon P, Petkau A, Graham M, Gilmour MW, Gerner-Smidt P; V. cholerae Outbreak Genomics Task Force.

Emerg Infect Dis. 2011 Nov;17(11):2113-21. doi: 10.3201/eid1711.110794.

19.

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