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Items: 45

1.

Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.

Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, Mihaltcheva S, LaButti K, Lipzen A, Waldron R, Moloney NM, Sperisen C, Kredics L, Vágvölgyi C, Patrignani A, Fitzpatrick D, Nagy I, Doyle S, Anderson JB, Grigoriev IV, Güldener U, Münsterkötter M, Nagy LG.

Nat Ecol Evol. 2018 Mar;2(3):577. doi: 10.1038/s41559-018-0469-7.

PMID:
29426895
2.

Elucidation of the Two H3K36me3 Histone Methyltransferases Set2 and Ash1 in Fusarium fujikuroi Unravels Their Different Chromosomal Targets and a Major Impact of Ash1 on Genome Stability.

Janevska S, Baumann L, Sieber CMK, Münsterkötter M, Ulrich J, Kämper J, Güldener U, Tudzynski B.

Genetics. 2018 Jan;208(1):153-171. doi: 10.1534/genetics.117.1119. Epub 2017 Nov 16.

PMID:
29146582
3.

Comparative genomic and transcriptomic analyses unveil novel features of azole resistance and adaptation to the human host in Candida glabrata.

Salazar SB, Wang C, Münsterkötter M, Okamoto M, Takahashi-Nakaguchi A, Chibana H, Lopes MM, Güldener U, Butler G, Mira NP.

FEMS Yeast Res. 2018 Feb 1;18(1). doi: 10.1093/femsyr/fox079.

PMID:
29087506
4.

Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria.

Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, Mihaltcheva S, LaButti K, Lipzen A, Waldron R, Moloney NM, Sperisen C, Kredics L, Vágvölgyi C, Patrignani A, Fitzpatrick D, Nagy I, Doyle S, Anderson JB, Grigoriev IV, Güldener U, Münsterkötter M, Nagy LG.

Nat Ecol Evol. 2017 Dec;1(12):1931-1941. doi: 10.1038/s41559-017-0347-8. Epub 2017 Oct 30. Erratum in: Nat Ecol Evol. 2018 Feb 9;:.

5.

Analysis of the global regulator Lae1 uncovers a connection between Lae1 and the histone acetyltransferase HAT1 in Fusarium fujikuroi.

Niehaus EM, Rindermann L, Janevska S, Münsterkötter M, Güldener U, Tudzynski B.

Appl Microbiol Biotechnol. 2018 Jan;102(1):279-295. doi: 10.1007/s00253-017-8590-0. Epub 2017 Oct 28.

PMID:
29080998
6.

Comparative genomics of geographically distant Fusarium fujikuroi isolates revealed two distinct pathotypes correlating with secondary metabolite profiles.

Niehaus EM, Kim HK, Münsterkötter M, Janevska S, Arndt B, Kalinina SA, Houterman PM, Ahn IP, Alberti I, Tonti S, Kim DW, Sieber CMK, Humpf HU, Yun SH, Güldener U, Tudzynski B.

PLoS Pathog. 2017 Oct 26;13(10):e1006670. doi: 10.1371/journal.ppat.1006670. eCollection 2017 Oct.

7.

High-density genetic mapping identifies the genetic basis of a natural colony morphology mutant in the root rot pathogen Armillaria ostoyae.

Heinzelmann R, Croll D, Zoller S, Sipos G, Münsterkötter M, Güldener U, Rigling D.

Fungal Genet Biol. 2017 Nov;108:44-54. doi: 10.1016/j.fgb.2017.08.007. Epub 2017 Aug 30.

PMID:
28860084
8.

The GATA-Type Transcription Factor Csm1 Regulates Conidiation and Secondary Metabolism in Fusarium fujikuroi.

Niehaus EM, Schumacher J, Burkhardt I, Rabe P, Spitzer E, Münsterkötter M, Güldener U, Sieber CMK, Dickschat JS, Tudzynski B.

Front Microbiol. 2017 Jun 26;8:1175. doi: 10.3389/fmicb.2017.01175. eCollection 2017. Erratum in: Front Microbiol. 2017 Sep 14;8:1846.

9.

Genome sequence of the highly weak-acid-tolerant Zygosaccharomyces bailii IST302, amenable to genetic manipulations and physiological studies.

Palma M, Münsterkötter M, Peça J, Güldener U, Sá-Correia I.

FEMS Yeast Res. 2017 Jun 1;17(4). doi: 10.1093/femsyr/fox025.

10.

Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis.

Niehaus EM, Münsterkötter M, Proctor RH, Brown DW, Sharon A, Idan Y, Oren-Young L, Sieber CM, Novák O, Pěnčík A, Tarkowská D, Hromadová K, Freeman S, Maymon M, Elazar M, Youssef SA, El-Shabrawy ES, Shalaby AB, Houterman P, Brock NL, Burkhardt I, Tsavkelova EA, Dickschat JS, Galuszka P, Güldener U, Tudzynski B.

Genome Biol Evol. 2016 Dec 31;8(11):3574-3599. doi: 10.1093/gbe/evw259.

11.

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles.

Schlegel M, Münsterkötter M, Güldener U, Bruggmann R, Duò A, Hainaut M, Henrissat B, Sieber CM, Hoffmeister D, Grünig CR.

BMC Genomics. 2016 Dec 9;17(1):1015.

12.

Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses.

Penselin D, Münsterkötter M, Kirsten S, Felder M, Taudien S, Platzer M, Ashelford K, Paskiewicz KH, Harrison RJ, Hughes DJ, Wolf T, Shelest E, Graap J, Hoffmann J, Wenzel C, Wöltje N, King KM, Fitt BD, Güldener U, Avrova A, Knogge W.

BMC Genomics. 2016 Nov 22;17(1):953.

13.

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem.

Rabe F, Bosch J, Stirnberg A, Guse T, Bauer L, Seitner D, Rabanal FA, Czedik-Eysenberg A, Uhse S, Bindics J, Genenncher B, Navarrete F, Kellner R, Ekker H, Kumlehn J, Vogel JP, Gordon SP, Marcel TC, Münsterkötter M, Walter MC, Sieber CM, Mannhaupt G, Güldener U, Kahmann R, Djamei A.

Elife. 2016 Nov 11;5. pii: e20522. doi: 10.7554/eLife.20522.

14.

Comparison of Fusarium graminearum Transcriptomes on Living or Dead Wheat Differentiates Substrate-Responsive and Defense-Responsive Genes.

Boedi S, Berger H, Sieber C, Münsterkötter M, Maloku I, Warth B, Sulyok M, Lemmens M, Schuhmacher R, Güldener U, Strauss J.

Front Microbiol. 2016 Jul 26;7:1113. doi: 10.3389/fmicb.2016.01113. eCollection 2016.

15.

A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi.

Dutheil JY, Mannhaupt G, Schweizer G, M K Sieber C, Münsterkötter M, Güldener U, Schirawski J, Kahmann R.

Genome Biol Evol. 2016 Feb 12;8(3):681-704. doi: 10.1093/gbe/evw026.

16.

Hxt1, a monosaccharide transporter and sensor required for virulence of the maize pathogen Ustilago maydis.

Schuler D, Wahl R, Wippel K, Vranes M, Münsterkötter M, Sauer N, Kämper J.

New Phytol. 2015 May;206(3):1086-100. doi: 10.1111/nph.13314. Epub 2015 Feb 10.

17.

The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer.

Sieber CM, Lee W, Wong P, Münsterkötter M, Mewes HW, Schmeitzl C, Varga E, Berthiller F, Adam G, Güldener U.

PLoS One. 2014 Oct 15;9(10):e110311. doi: 10.1371/journal.pone.0110311. eCollection 2014.

18.

Molecular analysis of Coxiella burnetii in Germany reveals evolution of unique clonal clusters.

Frangoulidis D, Walter MC, Antwerpen M, Zimmermann P, Janowetz B, Alex M, Böttcher J, Henning K, Hilbert A, Ganter M, Runge M, Münsterkötter M, Splettstoesser WD, Hanczaruk M.

Int J Med Microbiol. 2014 Oct;304(7):868-76. doi: 10.1016/j.ijmm.2014.06.011. Epub 2014 Jun 27.

PMID:
25037926
19.

The genome sequence of the highly acetic acid-tolerant Zygosaccharomyces bailii-derived interspecies hybrid strain ISA1307, isolated from a sparkling wine plant.

Mira NP, Münsterkötter M, Dias-Valada F, Santos J, Palma M, Roque FC, Guerreiro JF, Rodrigues F, Sousa MJ, Leão C, Güldener U, Sá-Correia I.

DNA Res. 2014 Jun;21(3):299-313. doi: 10.1093/dnares/dst058. Epub 2014 Jan 21.

20.

Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites.

Wiemann P, Sieber CM, von Bargen KW, Studt L, Niehaus EM, Espino JJ, Huß K, Michielse CB, Albermann S, Wagner D, Bergner SV, Connolly LR, Fischer A, Reuter G, Kleigrewe K, Bald T, Wingfield BD, Ophir R, Freeman S, Hippler M, Smith KM, Brown DW, Proctor RH, Münsterkötter M, Freitag M, Humpf HU, Güldener U, Tudzynski B.

PLoS Pathog. 2013;9(6):e1003475. doi: 10.1371/journal.ppat.1003475. Epub 2013 Jun 27.

21.

Analysis of the Elodea nuttallii transcriptome in response to mercury and cadmium pollution: development of sensitive tools for rapid ecotoxicological testing.

Regier N, Baerlocher L, Münsterkötter M, Farinelli L, Cosio C.

Environ Sci Technol. 2013 Aug 6;47(15):8825-34. doi: 10.1021/es401082h. Epub 2013 Jul 25.

PMID:
23802634
22.

Genome comparison of barley and maize smut fungi reveals targeted loss of RNA silencing components and species-specific presence of transposable elements.

Laurie JD, Ali S, Linning R, Mannhaupt G, Wong P, Güldener U, Münsterkötter M, Moore R, Kahmann R, Bakkeren G, Schirawski J.

Plant Cell. 2012 May;24(5):1733-45. doi: 10.1105/tpc.112.097261. Epub 2012 May 22.

23.

Pathogenicity determinants in smut fungi revealed by genome comparison.

Schirawski J, Mannhaupt G, Münch K, Brefort T, Schipper K, Doehlemann G, Di Stasio M, Rössel N, Mendoza-Mendoza A, Pester D, Müller O, Winterberg B, Meyer E, Ghareeb H, Wollenberg T, Münsterkötter M, Wong P, Walter M, Stukenbrock E, Güldener U, Kahmann R.

Science. 2010 Dec 10;330(6010):1546-8. doi: 10.1126/science.1195330.

24.

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum.

Wong P, Walter M, Lee W, Mannhaupt G, Münsterkötter M, Mewes HW, Adam G, Güldener U.

Nucleic Acids Res. 2011 Jan;39(Database issue):D637-9. doi: 10.1093/nar/gkq1016. Epub 2010 Nov 4.

25.

Transcriptome responses to aluminum stress in roots of aspen (Populus tremula).

Grisel N, Zoller S, Künzli-Gontarczyk M, Lampart T, Münsterkötter M, Brunner I, Bovet L, Métraux JP, Sperisen C.

BMC Plant Biol. 2010 Aug 23;10:185. doi: 10.1186/1471-2229-10-185.

26.

PEDANT covers all complete RefSeq genomes.

Walter MC, Rattei T, Arnold R, Güldener U, Münsterkötter M, Nenova K, Kastenmüller G, Tischler P, Wölling A, Volz A, Pongratz N, Jost R, Mewes HW, Frishman D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D408-11. doi: 10.1093/nar/gkn749. Epub 2008 Oct 21.

27.

The posttranscriptional machinery of Ustilago maydis.

Feldbrügge M, Zarnack K, Vollmeister E, Baumann S, Koepke J, König J, Münsterkötter M, Mannhaupt G.

Fungal Genet Biol. 2008 Aug;45 Suppl 1:S40-6. doi: 10.1016/j.fgb.2008.03.013. Epub 2008 Mar 31. Review.

PMID:
18468465
28.

MIPS: analysis and annotation of genome information in 2007.

Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. Epub 2007 Dec 23.

29.
30.

The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization.

Cuomo CA, Güldener U, Xu JR, Trail F, Turgeon BG, Di Pietro A, Walton JD, Ma LJ, Baker SE, Rep M, Adam G, Antoniw J, Baldwin T, Calvo S, Chang YL, Decaprio D, Gale LR, Gnerre S, Goswami RS, Hammond-Kosack K, Harris LJ, Hilburn K, Kennell JC, Kroken S, Magnuson JK, Mannhaupt G, Mauceli E, Mewes HW, Mitterbauer R, Muehlbauer G, Münsterkötter M, Nelson D, O'donnell K, Ouellet T, Qi W, Quesneville H, Roncero MI, Seong KY, Tetko IV, Urban M, Waalwijk C, Ward TJ, Yao J, Birren BW, Kistler HC.

Science. 2007 Sep 7;317(5843):1400-2.

31.

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.

Kämper J, Kahmann R, Bölker M, Ma LJ, Brefort T, Saville BJ, Banuett F, Kronstad JW, Gold SE, Müller O, Perlin MH, Wösten HA, de Vries R, Ruiz-Herrera J, Reynaga-Peña CG, Snetselaar K, McCann M, Pérez-Martín J, Feldbrügge M, Basse CW, Steinberg G, Ibeas JI, Holloman W, Guzman P, Farman M, Stajich JE, Sentandreu R, González-Prieto JM, Kennell JC, Molina L, Schirawski J, Mendoza-Mendoza A, Greilinger D, Münch K, Rössel N, Scherer M, Vranes M, Ladendorf O, Vincon V, Fuchs U, Sandrock B, Meng S, Ho EC, Cahill MJ, Boyce KJ, Klose J, Klosterman SJ, Deelstra HJ, Ortiz-Castellanos L, Li W, Sanchez-Alonso P, Schreier PH, Häuser-Hahn I, Vaupel M, Koopmann E, Friedrich G, Voss H, Schlüter T, Margolis J, Platt D, Swimmer C, Gnirke A, Chen F, Vysotskaia V, Mannhaupt G, Güldener U, Münsterkötter M, Haase D, Oesterheld M, Mewes HW, Mauceli EW, DeCaprio D, Wade CM, Butler J, Young S, Jaffe DB, Calvo S, Nusbaum C, Galagan J, Birren BW.

Nature. 2006 Nov 2;444(7115):97-101.

PMID:
17080091
32.

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum.

Güldener U, Mannhaupt G, Münsterkötter M, Haase D, Oesterheld M, Stümpflen V, Mewes HW, Adam G.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D456-8.

33.

MPact: the MIPS protein interaction resource on yeast.

Güldener U, Münsterkötter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stümpflen V.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D436-41.

34.

MIPS: analysis and annotation of proteins from whole genomes in 2005.

Mewes HW, Frishman D, Mayer KF, Münsterkötter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stümpflen V.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D169-72.

35.

CYGD: the Comprehensive Yeast Genome Database.

Güldener U, Münsterkötter M, Kastenmüller G, Strack N, van Helden J, Lemer C, Richelles J, Wodak SJ, García-Martínez J, Pérez-Ortín JE, Michael H, Kaps A, Talla E, Dujon B, André B, Souciet JL, De Montigny J, Bon E, Gaillardin C, Mewes HW.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D364-8.

36.

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes.

Ruepp A, Zollner A, Maier D, Albermann K, Hani J, Mokrejs M, Tetko I, Güldener U, Mannhaupt G, Münsterkötter M, Mewes HW.

Nucleic Acids Res. 2004 Oct 14;32(18):5539-45. Print 2004.

37.

MitoP2, an integrated database on mitochondrial proteins in yeast and man.

Andreoli C, Prokisch H, Hörtnagel K, Mueller JC, Münsterkötter M, Scharfe C, Meitinger T.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D459-62.

38.

MIPS: analysis and annotation of proteins from whole genomes.

Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D41-4.

39.

Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.

Bon E, Casaregola S, Blandin G, Llorente B, Neuvéglise C, Munsterkotter M, Guldener U, Mewes HW, Van Helden J, Dujon B, Gaillardin C.

Nucleic Acids Res. 2003 Feb 15;31(4):1121-35.

40.

Systematic analysis of sporulation phenotypes in 624 non-lethal homozygous deletion strains of Saccharomyces cerevisiae.

Briza P, Bogengruber E, Thür A, Rützler M, Münsterkötter M, Dawes IW, Breitenbach M.

Yeast. 2002 Mar 30;19(5):403-22.

41.

MIPS: a database for genomes and protein sequences.

Mewes HW, Frishman D, Güldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B, Münsterkötter M, Rudd S, Weil B.

Nucleic Acids Res. 2002 Jan 1;30(1):31-4.

42.

Transcriptional regulation of the yeast PHO8 promoter in comparison to the coregulated PHO5 promoter.

Munsterkötter M, Barbaric S, Hörz W.

J Biol Chem. 2000 Jul 28;275(30):22678-85.

43.

Chromatin remodelling at the PHO8 promoter requires SWI-SNF and SAGA at a step subsequent to activator binding.

Gregory PD, Schmid A, Zavari M, Münsterkötter M, Hörz W.

EMBO J. 1999 Nov 15;18(22):6407-14.

44.
45.

The homeodomain protein Pho2 and the basic-helix-loop-helix protein Pho4 bind DNA cooperatively at the yeast PHO5 promoter.

Barbarić S, Münsterkötter M, Svaren J, Hörz W.

Nucleic Acids Res. 1996 Nov 15;24(22):4479-86.

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