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Items: 35

1.

A Multivariate Genome-Wide Association Study of Wing Shape in Drosophila melanogaster.

Pitchers W, Nye J, Márquez EJ, Kowalski A, Dworkin I, Houle D.

Genetics. 2019 Apr;211(4):1429-1447. doi: 10.1534/genetics.118.301342. Epub 2019 Feb 21.

PMID:
30792267
2.

Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function.

Lawlor N, Márquez EJ, Orchard P, Narisu N, Shamim MS, Thibodeau A, Varshney A, Kursawe R, Erdos MR, Kanke M, Gu H, Pak E, Dutra A, Russell S, Li X, Piecuch E, Luo O, Chines PS, Fuchbserger C; NIH Intramural Sequencing Center, Sethupathy P, Aiden AP, Ruan Y, Aiden EL, Collins FS, Ucar D, Parker SCJ, Stitzel ML.

Cell Rep. 2019 Jan 15;26(3):788-801.e6. doi: 10.1016/j.celrep.2018.12.083.

3.

Microsatellite loci development and population genetics in Neotropical fish Curimata mivartii (Characiformes: Curimatidae).

Landínez-García RM, Marquez EJ.

PeerJ. 2018 Nov 13;6:e5959. doi: 10.7717/peerj.5959. eCollection 2018.

4.

BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test.

Youn A, Marquez EJ, Lawlor N, Stitzel ML, Ucar D.

Nucleic Acids Res. 2019 Jan 25;47(2):e11. doi: 10.1093/nar/gky1117.

5.

Type 2 Diabetes-Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets.

Khetan S, Kursawe R, Youn A, Lawlor N, Jillette A, Marquez EJ, Ucar D, Stitzel ML.

Diabetes. 2018 Nov;67(11):2466-2477. doi: 10.2337/db18-0393. Epub 2018 Sep 4.

6.

Metagenomic analysis of orange colored protrusions from the muscle of Queen Conch Lobatus gigas (Linnaeus, 1758).

Cuartas JH, Alzate JF, Moreno-Herrera CX, Marquez EJ.

PeerJ. 2018 Feb 15;6:e4307. doi: 10.7717/peerj.4307. eCollection 2018.

7.

Chromatin interaction networks revealed unique connectivity patterns of broad H3K4me3 domains and super enhancers in 3D chromatin.

Thibodeau A, Márquez EJ, Shin DG, Vera-Licona P, Ucar D.

Sci Rep. 2017 Oct 31;7(1):14466. doi: 10.1038/s41598-017-14389-7.

8.

The chromatin accessibility signature of human immune aging stems from CD8+ T cells.

Ucar D, Márquez EJ, Chung CH, Marches R, Rossi RJ, Uyar A, Wu TC, George J, Stitzel ML, Palucka AK, Kuchel GA, Banchereau J.

J Exp Med. 2017 Oct 2;214(10):3123-3144. doi: 10.1084/jem.20170416. Epub 2017 Sep 13.

9.

Shell shape variation of queen conch Strombus gigas (Mesograstropoda: Strombidae) from Southwest Caribbean.

Márquez EJ, Restrepo-Escobar N, Montoya-Herrera FL.

Rev Biol Trop. 2016 Dec;64(4):1585-95.

PMID:
29465920
10.
11.

[Phenotypic variation of Panulirus argus (Decapoda: Paniluridae) in Southwest Caribbean].

Bolaños-Cubillos N, Campos NH, Márquez EJ.

Rev Biol Trop. 2016 Sep;64(3):975-90. Spanish.

PMID:
29461764
12.

QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks.

Thibodeau A, Márquez EJ, Luo O, Ruan Y, Menghi F, Shin DG, Stitzel ML, Vera-Licona P, Ucar D.

PLoS Comput Biol. 2016 Jun 23;12(6):e1004809. doi: 10.1371/journal.pcbi.1004809. eCollection 2016 Jun.

13.

[Morfogeometry shell crab Damithrax spinosissimus (Decapoda: Mithracidae) on three islands in the southwestern Caribbean].

Martínez-Campos B, Campos NH, Bermúdez Tobón A, Márquez EJ.

Rev Biol Trop. 2016 Jun;64(2):667-81. Spanish.

PMID:
29451762
14.

Variations of body geometry in Brycon henni (Teleostei: Characiformes, Bryconidae) in different rivers and streams.

Restrepo-Escobar N, Hurtado-Alarcón JC, Mancera-Rodríguez NJ, Márquez EJ.

J Fish Biol. 2016 Jul;89(1):522-8. doi: 10.1111/jfb.12971. Epub 2016 Apr 27.

PMID:
27117920
15.

Molecular and morphometric characterization of two dental morphs of Saccodon dariensis (Parodontidae).

Restrepo-Escobar N, Rangel-Medrano JD, Mancera-Rodríguez NJ, Márquez EJ.

J Fish Biol. 2016 Jul;89(1):529-36. doi: 10.1111/jfb.12961. Epub 2016 Apr 24.

PMID:
27109861
16.

The tandem duplicator phenotype as a distinct genomic configuration in cancer.

Menghi F, Inaki K, Woo X, Kumar PA, Grzeda KR, Malhotra A, Yadav V, Kim H, Marquez EJ, Ucar D, Shreckengast PT, Wagner JP, MacIntyre G, Murthy Karuturi KR, Scully R, Keck J, Chuang JH, Liu ET.

Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):E2373-82. doi: 10.1073/pnas.1520010113. Epub 2016 Apr 7.

17.

Heritability of Wing Size and Shape of the Rice and Corn Strains of Spodoptera frugiperda (J.E. Smith) (Lepidoptera: Noctuidae).

Cañas-Hoyos N, Márquez EJ, Saldamando-Benjumea CI.

Neotrop Entomol. 2016 Aug;45(4):411-9. doi: 10.1007/s13744-016-0393-y. Epub 2016 Apr 4.

PMID:
27044394
18.

Linkage Disequilibrium and Inversion-Typing of the Drosophila melanogaster Genome Reference Panel.

Houle D, Márquez EJ.

G3 (Bethesda). 2015 Jun 10;5(8):1695-701. doi: 10.1534/g3.115.019554.

19.

Complete mitochondrial genome of the Neotropical catfish Pseudoplatystoma magdaleniatum (Siluriformes, Pimelodidae).

Rangel-Medrano JD, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4033-4034. Epub 2015 Jan 28.

PMID:
25629466
20.

Mitochondrial genome of the Trans-Andean shovelnose catfish Sorubim cuspicaudus (Siluriformes, Pimelodidae).

Restrepo-Escobar N, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):3964-3965. Epub 2014 Dec 26.

PMID:
25541312
21.

Mitochondrial genome of the Neotropical trans-Andean fish Ichthyoelephas longirostris, Steindachner 1879 (Characiformes, Prochilodontidae).

Landínez-García RM, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):2194-5. doi: 10.3109/19401736.2014.982622. Epub 2014 Nov 25.

PMID:
25423520
22.

Mitochondrial genome of the Neotropical detritivore fish Curimata mivartii Steindachner 1878 (Characiformes, Curimatidae).

Landínez-García RM, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):2196-7. doi: 10.3109/19401736.2014.982623. Epub 2014 Nov 25.

PMID:
25423519
23.

Mitochondrial genome of the Neotropical catfish Ageneiosus pardalis, Lütken 1874 (Siluriformes, Auchenipteridae).

Restrepo-Escobar N, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):2176-7. doi: 10.3109/19401736.2014.982613. Epub 2014 Nov 25.

PMID:
25423507
24.

Complete mitogenome of the Neotropical fish Brycon henni, Eigenmann 1913 (Characiformes, Bryconidae).

Landínez-García RM, Alzate JF, Márquez EJ.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):2259-60. doi: 10.3109/19401736.2014.984170. Epub 2014 Nov 25.

PMID:
25423503
25.

Mitochondrial genome of the blackfin tuna Thunnus atlanticus Lesson, 1831 (Perciformes, Scrombidae).

Márquez EJ, Isaza JP, Alzate JF.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):1771-2. doi: 10.3109/19401736.2014.963805. Epub 2014 Sep 30.

PMID:
25269003
26.

Mitochondrial genome of the Caribbean king crab Damithrax spinosissimus (Lamarck, 1818) (Decapoda: Majidae).

Márquez EJ, Hurtado-Alarcón JC, Isaza JP, Alzate JF, Campos NH.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):1724-5. doi: 10.3109/19401736.2014.961140. Epub 2014 Sep 22.

PMID:
25242176
27.

Mitochondrial genome of the endangered marine gastropod Strombus gigas Linnaeus, 1758 (Mollusca: Gastropoda).

Márquez EJ, Castro ER, Alzate JF.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):1516-7. doi: 10.3109/19401736.2014.953118. Epub 2014 Sep 4.

PMID:
25186797
28.

Geometric morphometric analysis of Colombian Anopheles albimanus (Diptera: Culicidae) reveals significant effect of environmental factors on wing traits and presence of a metapopulation.

Gómez GF, Márquez EJ, Gutiérrez LA, Conn JE, Correa MM.

Acta Trop. 2014 Jul;135:75-85. doi: 10.1016/j.actatropica.2014.03.020. Epub 2014 Apr 2.

30.

The Measurement of Local Variation in Shape.

Márquez EJ, Cabeen R, Woods RP, Houle D.

Evol Biol. 2012 Sep 1;39(3):419-439.

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33.

A statistical framework for testing modularity in multidimensional data.

Márquez EJ.

Evolution. 2008 Oct;62(10):2688-708. doi: 10.1111/j.1558-5646.2008.00476.x. Epub 2008 Sep 12.

34.
35.

Freezing tolerance in grasses along an altitudinal gradient in the Venezuelan Andes.

Márquez EJ, Rada F, Fariñas MR.

Oecologia. 2006 Dec;150(3):393-7. Epub 2006 Sep 21.

PMID:
17024382

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