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Items: 25

1.

Long-term expanding human airway organoids for disease modeling.

Sachs N, Papaspyropoulos A, Zomer-van Ommen DD, Heo I, Böttinger L, Klay D, Weeber F, Huelsz-Prince G, Iakobachvili N, Amatngalim GD, de Ligt J, van Hoeck A, Proost N, Viveen MC, Lyubimova A, Teeven L, Derakhshan S, Korving J, Begthel H, Dekkers JF, Kumawat K, Ramos E, van Oosterhout MF, Offerhaus GJ, Wiener DJ, Olimpio EP, Dijkstra KK, Smit EF, van der Linden M, Jaksani S, van de Ven M, Jonkers J, Rios AC, Voest EE, van Moorsel CH, van der Ent CK, Cuppen E, van Oudenaarden A, Coenjaerts FE, Meyaard L, Bont LJ, Peters PJ, Tans SJ, van Zon JS, Boj SF, Vries RG, Beekman JM, Clevers H.

EMBO J. 2019 Feb 15;38(4). pii: e100300. doi: 10.15252/embj.2018100300. Epub 2019 Jan 14.

2.

Potential impact of implementing and scaling up harm reduction and antiretroviral therapy on HIV prevalence and mortality and overdose deaths among people who inject drugs in two Russian cities: a modelling study.

Cepeda JA, Eritsyan K, Vickerman P, Lyubimova A, Shegay M, Odinokova V, Beletsky L, Borquez A, Hickman M, Beyrer C, Martin NK.

Lancet HIV. 2018 Oct;5(10):e578-e587. doi: 10.1016/S2352-3018(18)30168-1. Epub 2018 Jul 20.

PMID:
30033374
3.

Mapping the physical network of cellular interactions.

Boisset JC, Vivié J, Grün D, Muraro MJ, Lyubimova A, van Oudenaarden A.

Nat Methods. 2018 Jul;15(7):547-553. doi: 10.1038/s41592-018-0009-z. Epub 2018 May 21.

PMID:
29786092
4.

A Single-Cell RNA Sequencing Study Reveals Cellular and Molecular Dynamics of the Hippocampal Neurogenic Niche.

Artegiani B, Lyubimova A, Muraro M, van Es JH, van Oudenaarden A, Clevers H.

Cell Rep. 2017 Dec 12;21(11):3271-3284. doi: 10.1016/j.celrep.2017.11.050.

5.

Reg4+ deep crypt secretory cells function as epithelial niche for Lgr5+ stem cells in colon.

Sasaki N, Sachs N, Wiebrands K, Ellenbroek SI, Fumagalli A, Lyubimova A, Begthel H, van den Born M, van Es JH, Karthaus WR, Li VS, López-Iglesias C, Peters PJ, van Rheenen J, van Oudenaarden A, Clevers H.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):E5399-407. doi: 10.1073/pnas.1607327113. Epub 2016 Aug 29.

6.

Patched Receptors Sense, Interpret, and Establish an Epidermal Hedgehog Signaling Gradient.

Adolphe C, Junker JP, Lyubimova A, van Oudenaarden A, Wainwright B.

J Invest Dermatol. 2017 Jan;137(1):179-186. doi: 10.1016/j.jid.2016.06.632. Epub 2016 Aug 4.

7.

De Novo Prediction of Stem Cell Identity using Single-Cell Transcriptome Data.

Grün D, Muraro MJ, Boisset JC, Wiebrands K, Lyubimova A, Dharmadhikari G, van den Born M, van Es J, Jansen E, Clevers H, de Koning EJP, van Oudenaarden A.

Cell Stem Cell. 2016 Aug 4;19(2):266-277. doi: 10.1016/j.stem.2016.05.010. Epub 2016 Jun 23.

8.

Non-fatal overdoses and related risk factors among people who inject drugs in St. Petersburg, Russia and Kohtla-Järve, Estonia.

Uusküla A, Raag M, Vorobjov S, Rüütel K, Lyubimova A, Levina OS, Heimer R.

BMC Public Health. 2015 Dec 18;15:1255. doi: 10.1186/s12889-015-2604-6.

9.

Emergence of methadone as a street drug in St. Petersburg, Russia.

Heimer R, Lyubimova A, Barbour R, Levina OS.

Int J Drug Policy. 2016 Jan;27:97-104. doi: 10.1016/j.drugpo.2015.10.001. Epub 2015 Oct 19.

10.

Single-cell messenger RNA sequencing reveals rare intestinal cell types.

Grün D, Lyubimova A, Kester L, Wiebrands K, Basak O, Sasaki N, Clevers H, van Oudenaarden A.

Nature. 2015 Sep 10;525(7568):251-5. doi: 10.1038/nature14966. Epub 2015 Aug 19.

PMID:
26287467
11.

Community reentry challenges after release from prison among people who inject drugs in St. Petersburg, Russia.

Cepeda JA, Vetrova MV, Lyubimova AI, Levina OS, Heimer R, Niccolai LM.

Int J Prison Health. 2015;11(3):183-92. doi: 10.1108/IJPH-03-2015-0007.

12.

High-risk behaviors after release from incarceration among people who inject drugs in St. Petersburg, Russia.

Cepeda JA, Niccolai LM, Lyubimova A, Kershaw T, Levina O, Heimer R.

Drug Alcohol Depend. 2015 Feb 1;147:196-202. doi: 10.1016/j.drugalcdep.2014.11.021. Epub 2014 Dec 2.

13.

Differentiated Troy+ chief cells act as reserve stem cells to generate all lineages of the stomach epithelium.

Stange DE, Koo BK, Huch M, Sibbel G, Basak O, Lyubimova A, Kujala P, Bartfeld S, Koster J, Geahlen JH, Peters PJ, van Es JH, van de Wetering M, Mills JC, Clevers H.

Cell. 2013 Oct 10;155(2):357-68. doi: 10.1016/j.cell.2013.09.008.

14.

Single-molecule mRNA detection and counting in mammalian tissue.

Lyubimova A, Itzkovitz S, Junker JP, Fan ZP, Wu X, van Oudenaarden A.

Nat Protoc. 2013 Sep;8(9):1743-58. doi: 10.1038/nprot.2013.109. Epub 2013 Aug 15.

PMID:
23949380
15.

A physical sciences network characterization of non-tumorigenic and metastatic cells.

Physical Sciences - Oncology Centers Network, Agus DB, Alexander JF, Arap W, Ashili S, Aslan JE, Austin RH, Backman V, Bethel KJ, Bonneau R, Chen WC, Chen-Tanyolac C, Choi NC, Curley SA, Dallas M, Damania D, Davies PC, Decuzzi P, Dickinson L, Estevez-Salmeron L, Estrella V, Ferrari M, Fischbach C, Foo J, Fraley SI, Frantz C, Fuhrmann A, Gascard P, Gatenby RA, Geng Y, Gerecht S, Gillies RJ, Godin B, Grady WM, Greenfield A, Hemphill C, Hempstead BL, Hielscher A, Hillis WD, Holland EC, Ibrahim-Hashim A, Jacks T, Johnson RH, Joo A, Katz JE, Kelbauskas L, Kesselman C, King MR, Konstantopoulos K, Kraning-Rush CM, Kuhn P, Kung K, Kwee B, Lakins JN, Lambert G, Liao D, Licht JD, Liphardt JT, Liu L, Lloyd MC, Lyubimova A, Mallick P, Marko J, McCarty OJ, Meldrum DR, Michor F, Mumenthaler SM, Nandakumar V, O'Halloran TV, Oh S, Pasqualini R, Paszek MJ, Philips KG, Poultney CS, Rana K, Reinhart-King CA, Ros R, Semenza GL, Senechal P, Shuler ML, Srinivasan S, Staunton JR, Stypula Y, Subramanian H, Tlsty TD, Tormoen GW, Tseng Y, van Oudenaarden A, Verbridge SS, Wan JC, Weaver VM, Widom J, Will C, Wirtz D, Wojtkowiak J, Wu PH.

Sci Rep. 2013;3:1449. doi: 10.1038/srep01449.

16.

Dll1+ secretory progenitor cells revert to stem cells upon crypt damage.

van Es JH, Sato T, van de Wetering M, Lyubimova A, Yee Nee AN, Gregorieff A, Sasaki N, Zeinstra L, van den Born M, Korving J, Martens ACM, Barker N, van Oudenaarden A, Clevers H.

Nat Cell Biol. 2012 Oct;14(10):1099-1104. doi: 10.1038/ncb2581. Epub 2012 Sep 23.

17.

Enteropathogenic Escherichia coli and vaccinia virus do not require the family of WASP-interacting proteins for pathogen-induced actin assembly.

Garber JJ, Takeshima F, Antón IM, Oyoshi MK, Lyubimova A, Kapoor A, Shibata T, Chen F, Alt FW, Geha RS, Leong JM, Snapper SB.

Infect Immun. 2012 Dec;80(12):4071-7. doi: 10.1128/IAI.06148-11. Epub 2012 Sep 10.

18.

Single-molecule transcript counting of stem-cell markers in the mouse intestine.

Itzkovitz S, Lyubimova A, Blat IC, Maynard M, van Es J, Lees J, Jacks T, Clevers H, van Oudenaarden A.

Nat Cell Biol. 2011 Nov 27;14(1):106-14. doi: 10.1038/ncb2384.

19.

Drug network characteristics and HIV risk among injection drug users in Russia: the roles of trust, size, and stability.

Cepeda JA, Odinokova VA, Heimer R, Grau LE, Lyubimova A, Safiullina L, Levina OS, Niccolai LM.

AIDS Behav. 2011 Jul;15(5):1003-10. doi: 10.1007/s10461-010-9816-7.

20.

Neural Wiskott-Aldrich syndrome protein modulates Wnt signaling and is required for hair follicle cycling in mice.

Lyubimova A, Garber JJ, Upadhyay G, Sharov A, Anastasoaie F, Yajnik V, Cotsarelis G, Dotto GP, Botchkarev V, Snapper SB.

J Clin Invest. 2010 Feb;120(2):446-56. doi: 10.1172/JCI36478. Epub 2010 Jan 11.

21.

The NF2 tumor suppressor Merlin and the ERM proteins interact with N-WASP and regulate its actin polymerization function.

Manchanda N, Lyubimova A, Ho HY, James MF, Gusella JF, Ramesh N, Snapper SB, Ramesh V.

J Biol Chem. 2005 Apr 1;280(13):12517-22. Epub 2005 Feb 7.

22.

Autoregulation of actin synthesis requires the 3'-UTR of actin mRNA and protects cells from actin overproduction.

Lyubimova A, Bershadsky AD, Ben-Ze'ev A.

J Cell Biochem. 1999 Nov;76(1):1-12.

PMID:
10580995
23.

Autoregulation of actin synthesis responds to monomeric actin levels.

Lyubimova A, Bershadsky AD, Ben-Ze'ev A.

J Cell Biochem. 1997 Jun 15;65(4):469-78.

PMID:
9178097
24.

Involvement of microtubules in the control of adhesion-dependent signal transduction.

Bershadsky A, Chausovsky A, Becker E, Lyubimova A, Geiger B.

Curr Biol. 1996 Oct 1;6(10):1279-89.

25.

Role of the microtubular system in morphological organization of normal and oncogene-transfected epithelial cells.

Gloushankova NA, Lyubimova AV, Tint IS, Feder HH, Vasiliev JM, Gelfand IM.

Proc Natl Acad Sci U S A. 1994 Aug 30;91(18):8597-601.

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