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Items: 1 to 50 of 63

1.

Hybridization-facilitated genome merger and repeated chromosome fusion after eight million years.

Mandáková T, Guo X, Özüdoğru B, Mummenhoff K, Lysak MA.

Plant J. 2018 Aug 12. doi: 10.1111/tpj.14065. [Epub ahead of print]

PMID:
30101476
2.

Post-polyploid diploidization and diversification through dysploid changes.

Mandáková T, Lysak MA.

Curr Opin Plant Biol. 2018 Apr;42:55-65. doi: 10.1016/j.pbi.2018.03.001. Epub 2018 Mar 19. Review.

PMID:
29567623
3.

Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone.

Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T.

Nat Ecol Evol. 2017 Oct;1(10):1585. doi: 10.1038/s41559-017-0310-8.

PMID:
29185503
4.

Multispeed genome diploidization and diversification after an ancient allopolyploidization.

Mandáková T, Pouch M, Harmanová K, Zhan SH, Mayrose I, Lysak MA.

Mol Ecol. 2017 Nov;26(22):6445-6462. doi: 10.1111/mec.14379. Epub 2017 Nov 25.

PMID:
29024107
5.

Young inversion with multiple linked QTLs under selection in a hybrid zone.

Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T.

Nat Ecol Evol. 2017 Apr 3;1(5):119. doi: 10.1038/s41559-017-0119. Erratum in: Nat Ecol Evol. 2017 Oct;1(10 ):1585.

6.

Monophyletic Origin and Evolution of the Largest Crucifer Genomes.

Mandáková T, Hloušková P, German DA, Lysak MA.

Plant Physiol. 2017 Aug;174(4):2062-2071. doi: 10.1104/pp.17.00457. Epub 2017 Jun 30.

7.

Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana.

Rabanal FA, Mandáková T, Soto-Jiménez LM, Greenhalgh R, Parrott DL, Lutzmayer S, Steffen JG, Nizhynska V, Mott R, Lysak MA, Clark RM, Nordborg M.

Genome Biol. 2017 May 3;18(1):75. doi: 10.1186/s13059-017-1209-z.

8.

Diverse genome organization following 13 independent mesopolyploid events in Brassicaceae contrasts with convergent patterns of gene retention.

Mandáková T, Li Z, Barker MS, Lysak MA.

Plant J. 2017 Jul;91(1):3-21. doi: 10.1111/tpj.13553. Epub 2017 May 11.

9.

Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana.

Rabanal FA, Nizhynska V, Mandáková T, Novikova PY, Lysak MA, Mott R, Nordborg M.

G3 (Bethesda). 2017 Apr 3;7(4):1201-1209. doi: 10.1534/g3.117.040204.

10.

How diploidization turned a tetraploid into a pseudotriploid.

Mandáková T, Gloss AD, Whiteman NK, Lysak MA.

Am J Bot. 2016 Jul;103(7):1187-96. doi: 10.3732/ajb.1500452. Epub 2016 Apr 14.

11.

Comparative paleogenomics of crucifers: ancestral genomic blocks revisited.

Lysak MA, Mandáková T, Schranz ME.

Curr Opin Plant Biol. 2016 Apr;30:108-15. doi: 10.1016/j.pbi.2016.02.001. Epub 2016 Mar 4. Review.

PMID:
26945766
12.

chromDraw: an R package for visualization of linear and circular karyotypes.

Janečka J, Lysak MA.

Chromosome Res. 2016 May;24(2):217-23. doi: 10.1007/s10577-015-9513-5. Epub 2016 Jan 20.

PMID:
26791998
13.

Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard.

Geiser C, Mandáková T, Arrigo N, Lysak MA, Parisod C.

Plant Cell. 2016 Jan;28(1):17-27. doi: 10.1105/tpc.15.00791. Epub 2015 Dec 14.

14.

A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History.

Hohmann N, Wolf EM, Lysak MA, Koch MA.

Plant Cell. 2015 Oct;27(10):2770-84. doi: 10.1105/tpc.15.00482. Epub 2015 Sep 26.

15.

Genome Structure of the Heavy Metal Hyperaccumulator Noccaea caerulescens and Its Stability on Metalliferous and Nonmetalliferous Soils.

Mandáková T, Singh V, Krämer U, Lysak MA.

Plant Physiol. 2015 Sep;169(1):674-89. doi: 10.1104/pp.15.00619. Epub 2015 Jul 20.

16.

Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size.

Kelly LJ, Renny-Byfield S, Pellicer J, Macas J, Novák P, Neumann P, Lysak MA, Day PD, Berger M, Fay MF, Nichols RA, Leitch AR, Leitch IJ.

New Phytol. 2015 Oct;208(2):596-607. doi: 10.1111/nph.13471. Epub 2015 Jun 8.

17.

Catastrophic chromosomal restructuring during genome elimination in plants.

Tan EH, Henry IM, Ravi M, Bradnam KR, Mandakova T, Marimuthu MP, Korf I, Lysak MA, Comai L, Chan SW.

Elife. 2015 May 15;4. pii: e06516. doi: 10.7554/eLife.06516.

18.

Karyotype evolution in apomictic Boechera and the origin of the aberrant chromosomes.

Mandáková T, Schranz ME, Sharbel TF, de Jong H, Lysak MA.

Plant J. 2015 Jun;82(5):785-93. doi: 10.1111/tpj.12849. Erratum in: Plant J. 2017 Apr;90(1):217.

19.

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation.

Willing EM, Rawat V, Mandáková T, Maumus F, James GV, Nordström KJ, Becker C, Warthmann N, Chica C, Szarzynska B, Zytnicki M, Albani MC, Kiefer C, Bergonzi S, Castaings L, Mateos JL, Berns MC, Bujdoso N, Piofczyk T, de Lorenzo L, Barrero-Sicilia C, Mateos I, Piednoël M, Hagmann J, Chen-Min-Tao R, Iglesias-Fernández R, Schuster SC, Alonso-Blanco C, Roudier F, Carbonero P, Paz-Ares J, Davis SJ, Pecinka A, Quesneville H, Colot V, Lysak MA, Weigel D, Coupland G, Schneeberger K.

Nat Plants. 2015 Feb 2;1:14023. doi: 10.1038/nplants.2014.23.

PMID:
27246759
20.

Chromatin features of plant telomeric sequences at terminal vs. internal positions.

Majerová E, Mandáková T, Vu GT, Fajkus J, Lysak MA, Fojtová M.

Front Plant Sci. 2014 Nov 4;5:593. doi: 10.3389/fpls.2014.00593. eCollection 2014.

21.

From transposon to chromosome and polyploidy. An update on cytogenetics and genomics of Arabidopsis.

Lysak MA, Fransz PF.

Chromosome Res. 2014 Jun;22(2):99-101. doi: 10.1007/s10577-014-9427-7. No abstract available.

PMID:
24924852
22.

When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine × schulzii trigenomic allopolyploid.

Zozomová-Lihová J, Mandáková T, Kovaříková A, Mühlhausen A, Mummenhoff K, Lysak MA, Kovařík A.

New Phytol. 2014 Sep;203(4):1096-108. doi: 10.1111/nph.12873. Epub 2014 Jun 11.

23.

Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy.

Zozomová-Lihová J, Krak K, Mandáková T, Shimizu KK, Spaniel S, Vít P, Lysak MA.

Ann Bot. 2014 Apr;113(5):817-30. doi: 10.1093/aob/mcu012. Epub 2014 Feb 26.

24.

Cardamine hirsuta: a versatile genetic system for comparative studies.

Hay AS, Pieper B, Cooke E, Mandáková T, Cartolano M, Tattersall AD, Ioio RD, McGowan SJ, Barkoulas M, Galinha C, Rast MI, Hofhuis H, Then C, Plieske J, Ganal M, Mott R, Martinez-Garcia JF, Carine MA, Scotland RW, Gan X, Filatov DA, Lysak MA, Tsiantis M.

Plant J. 2014 Apr;78(1):1-15. doi: 10.1111/tpj.12447. Epub 2014 Mar 18.

25.

The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure.

Mandáková T, Marhold K, Lysak MA.

New Phytol. 2014 Feb;201(3):982-92. doi: 10.1111/nph.12567. Epub 2013 Oct 30.

26.

BrassiBase: introduction to a novel knowledge database on Brassicaceae evolution.

Kiefer M, Schmickl R, German DA, Mandáková T, Lysak MA, Al-Shehbaz IA, Franzke A, Mummenhoff K, Stamatakis A, Koch MA.

Plant Cell Physiol. 2014 Jan;55(1):e3. doi: 10.1093/pcp/pct158. Epub 2013 Nov 19.

PMID:
24259684
27.

The more the merrier: recent hybridization and polyploidy in cardamine.

Mandáková T, Kovarík A, Zozomová-Lihová J, Shimizu-Inatsugi R, Shimizu KK, Mummenhoff K, Marhold K, Lysak MA.

Plant Cell. 2013 Sep;25(9):3280-95. doi: 10.1105/tpc.113.114405. Epub 2013 Sep 30.

28.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
29.

Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden.

Long Q, Rabanal FA, Meng D, Huber CD, Farlow A, Platzer A, Zhang Q, Vilhjálmsson BJ, Korte A, Nizhynska V, Voronin V, Korte P, Sedman L, Mandáková T, Lysak MA, Seren Ü, Hellmann I, Nordborg M.

Nat Genet. 2013 Aug;45(8):884-890. doi: 10.1038/ng.2678. Epub 2013 Jun 23.

30.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution.

Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, Steffen J, Takuno S, Brandvain Y, Coop G, Andolfatto P, Hu TT, Blanchette M, Clark RM, Quesneville H, Nordborg M, Gaut BS, Lysak MA, Jenkins J, Grimwood J, Chapman J, Prochnik S, Shu S, Rokhsar D, Schmutz J, Weigel D, Wright SI.

Nat Genet. 2013 Jul;45(7):831-5. doi: 10.1038/ng.2669. Epub 2013 Jun 9.

PMID:
23749190
31.

Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

Cheng F, Mandáková T, Wu J, Xie Q, Lysak MA, Wang X.

Plant Cell. 2013 May;25(5):1541-54. doi: 10.1105/tpc.113.110486. Epub 2013 May 7.

32.

Analysis of plant meiotic chromosomes by chromosome painting.

Lysak MA, Mandáková T.

Methods Mol Biol. 2013;990:13-24. doi: 10.1007/978-1-62703-333-6_2.

PMID:
23559198
33.

Interpretation of karyotype evolution should consider chromosome structural constraints.

Schubert I, Lysak MA.

Trends Genet. 2011 Jun;27(6):207-16. doi: 10.1016/j.tig.2011.03.004. Epub 2011 May 16.

PMID:
21592609
34.

Cabbage family affairs: the evolutionary history of Brassicaceae.

Franzke A, Lysak MA, Al-Shehbaz IA, Koch MA, Mummenhoff K.

Trends Plant Sci. 2011 Feb;16(2):108-16. doi: 10.1016/j.tplants.2010.11.005. Epub 2010 Dec 21. Review.

PMID:
21177137
35.

Diverse retrotransposon families and an AT-rich satellite DNA revealed in giant genomes of Fritillaria lilies.

Ambrozová K, Mandáková T, Bures P, Neumann P, Leitch IJ, Koblízková A, Macas J, Lysak MA.

Ann Bot. 2011 Feb;107(2):255-68. doi: 10.1093/aob/mcq235. Epub 2010 Dec 14.

36.

Island species radiation and karyotypic stasis in Pachycladon allopolyploids.

Mandáková T, Heenan PB, Lysak MA.

BMC Evol Biol. 2010 Nov 29;10:367. doi: 10.1186/1471-2148-10-367.

37.

Fast diploidization in close mesopolyploid relatives of Arabidopsis.

Mandáková T, Joly S, Krzywinski M, Mummenhoff K, Lysak MA.

Plant Cell. 2010 Jul;22(7):2277-90. doi: 10.1105/tpc.110.074526. Epub 2010 Jul 16.

38.

Reciprocal and multi-species chromosome BAC painting in crucifers (Brassicaceae).

Lysak MA, Mandáková T, Lacombe E.

Cytogenet Genome Res. 2010 Jul;129(1-3):184-9. doi: 10.1159/000312951. Epub 2010 May 26.

PMID:
20501976
39.

A bicontinental origin of polyploid Australian/New Zealand Lepidium species (Brassicaceae)? Evidence from genomic in situ hybridization.

Dierschke T, Mandáková T, Lysak MA, Mummenhoff K.

Ann Bot. 2009 Sep;104(4):681-8. doi: 10.1093/aob/mcp161. Epub 2009 Jul 9.

40.

The dynamic ups and downs of genome size evolution in Brassicaceae.

Lysak MA, Koch MA, Beaulieu JM, Meister A, Leitch IJ.

Mol Biol Evol. 2009 Jan;26(1):85-98. doi: 10.1093/molbev/msn223. Epub 2008 Oct 8.

PMID:
18842687
41.

Chromosomal phylogeny and karyotype evolution in x=7 crucifer species (Brassicaceae).

Mandáková T, Lysak MA.

Plant Cell. 2008 Oct;20(10):2559-70. doi: 10.1105/tpc.108.062166. Epub 2008 Oct 3.

42.

Punctuated genome size evolution in Liliaceae.

Leitch IJ, Beaulieu JM, Cheung K, Hanson L, Lysak MA, Fay MF.

J Evol Biol. 2007 Nov;20(6):2296-308.

43.

Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size.

Lysak MA, Cheung K, Kitschke M, Bures P.

Plant Physiol. 2007 Oct;145(2):402-10. Epub 2007 Aug 24.

44.

Chromosome arrangement and nuclear architecture but not centromeric sequences are conserved between Arabidopsis thaliana and Arabidopsis lyrata.

Berr A, Pecinka A, Meister A, Kreth G, Fuchs J, Blattner FR, Lysak MA, Schubert I.

Plant J. 2006 Dec;48(5):771-83.

45.

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

Schranz ME, Lysak MA, Mitchell-Olds T.

Trends Plant Sci. 2006 Nov;11(11):535-42. Epub 2006 Oct 6. Review.

PMID:
17029932
46.

Supernetwork identifies multiple events of plastid trnF(GAA) pseudogene evolution in the Brassicaceae.

Koch MA, Dobes C, Kiefer C, Schmickl R, Klimes L, Lysak MA.

Mol Biol Evol. 2007 Jan;24(1):63-73. Epub 2006 Sep 20.

PMID:
16987951
47.

Nuclear DNA content variation among Central European Koeleria taxa.

Pecinka A, Suchánková P, Lysak MA, Trávnícek B, Dolezel J.

Ann Bot. 2006 Jul;98(1):117-22. Epub 2006 May 12.

48.

Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species.

Lysak MA, Berr A, Pecinka A, Schmidt R, McBreen K, Schubert I.

Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5224-9. Epub 2006 Mar 20.

49.

Chromosomal localization of rDNA in the Brassicaceae.

Ali HB, Lysak MA, Schubert I.

Genome. 2005 Apr;48(2):341-6.

PMID:
15838557
50.

Chromosome triplication found across the tribe Brassiceae.

Lysak MA, Koch MA, Pecinka A, Schubert I.

Genome Res. 2005 Apr;15(4):516-25. Epub 2005 Mar 21.

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