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Chickspress: a resource for chicken gene expression.

McCarthy FM, Pendarvis K, Cooksey AM, Gresham CR, Bomhoff M, Davey S, Lyons E, Sonstegard TS, Bridges SM, Burgess SC.

Database (Oxford). 2019 Jan 1;2019. pii: baz058. doi: 10.1093/database/baz058.


Experimental Design to Systematically Develop a Knowledge Base for Effective Games for Health.

Baranowski T, Lyons EJ, Thompson D.

Games Health J. 2019 Jun 3. doi: 10.1089/g4h.2019.0057. [Epub ahead of print] No abstract available.


Change in physical activity and quality of life in endometrial cancer survivors receiving a physical activity intervention.

Robertson MC, Lyons EJ, Song J, Cox-Martin M, Li Y, Green CE, Pinto BM, Carmack CL, Harrison C, Baum G, Basen-Engquist KM.

Health Qual Life Outcomes. 2019 May 27;17(1):91. doi: 10.1186/s12955-019-1154-5.


A Decade of Teaching and Learning in Internal Medicine Ambulatory Education: A Scoping Review.

Coyle A, Helenius I, Cruz CM, Lyons EA, May N, Andrilli J, Bannet MM, Pinotti R, Thomas DC.

J Grad Med Educ. 2019 Apr;11(2):132-142. doi: 10.4300/JGME-D-18-00596.1. Review.


Developing Pharmacologic Treatments for Eosinophilic Esophagitis: Draft Guidance from the United States Food and Drug Administration.

Lyons E, Donohue K, Lee JJ.

Gastroenterology. 2019 Apr 22. pii: S0016-5085(19)36713-7. doi: 10.1053/j.gastro.2019.04.020. [Epub ahead of print] No abstract available.


Postmortem examination (2016-2017) of weanling and older horses for the presence of select species of endoparasites: Gasterophilus spp., Anoplocephala spp. and Strongylus spp. in specific anatomical sites.

Lyons ET, Bolin DC, Bryant UK, Cassone LM, Jackson CB, Janes JG, Kennedy LA, Loynachan AT, Boll KR, Burkhardt AS, Langlois EL, Minnis SM, Welsh SC, Scare JA.

Vet Parasitol Reg Stud Reports. 2018 Aug;13:98-104. doi: 10.1016/j.vprsr.2018.01.004. Epub 2018 Jan 12.


Increasing STEM undergraduate participation in innovative activities: Field experimental evidence.

Graff Zivin J, Lyons E.

PLoS One. 2019 Apr 5;14(4):e0214155. doi: 10.1371/journal.pone.0214155. eCollection 2019.


Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.


Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.


Tail Wags the Dog? Functional Gene Classes Driving Genome-Wide GC Content in Plasmodium spp.

Castillo AI, Nelson ADL, Lyons E.

Genome Biol Evol. 2019 Feb 1;11(2):497-507. doi: 10.1093/gbe/evz015.


Recollections of positive early caregiving relate to sympathetic nervous system activation and chronic inflammation in subsequent generations.

Lyons ER, Norman Wells J, Scholtes CM, Mintz B, Giuliano RJ, Skowron EA.

Dev Psychobiol. 2019 Mar;61(2):261-274. doi: 10.1002/dev.21815. Epub 2018 Dec 21.


N6-Methyladenosine Inhibits Local Ribonucleolytic Cleavage to Stabilize mRNAs in Arabidopsis.

Anderson SJ, Kramer MC, Gosai SJ, Yu X, Vandivier LE, Nelson ADL, Anderson ZD, Beilstein MA, Fray RG, Lyons E, Gregory BD.

Cell Rep. 2018 Oct 30;25(5):1146-1157.e3. doi: 10.1016/j.celrep.2018.10.020.


Multifocal Necrotizing Myopathy in Northern Elephant Seal ( Mirounga angustirostris) Pups, San Miguel Island, California.

Spraker TR, Kuzmina TA, Lyons ET, DeLong RL, Simeone C, Veeramachaneni DNR.

Vet Pathol. 2019 Jan;56(1):143-151. doi: 10.1177/0300985818790268. Epub 2018 Sep 16.


Challenges to Interprofessional Care in the ICU Environment.

Lyons EJ.

Crit Care Med. 2018 Oct;46(10):e1021-e1022. doi: 10.1097/CCM.0000000000003253. No abstract available.


A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).

François-Moutal L, Jahanbakhsh S, Nelson ADL, Ray D, Scott DD, Hennefarth MR, Moutal A, Perez-Miller S, Ambrose AJ, Al-Shamari A, Coursodon P, Meechoovet B, Reiman R, Lyons E, Beilstein M, Chapman E, Morris QD, Van Keuren-Jensen K, Hughes TR, Khanna R, Koehler C, Jen J, Gokhale V, Khanna M.

ACS Chem Biol. 2018 Oct 19;13(10):3000-3010. doi: 10.1021/acschembio.8b00745. Epub 2018 Sep 6.


Motivation for physical activity and the moderating effect of cancer diagnosis: A nationally representative cross-sectional study.

Robertson MC, Liao Y, Song J, Lyons EJ, Basen-Engquist KM.

Prev Med. 2018 Oct;115:8-11. doi: 10.1016/j.ypmed.2018.08.002. Epub 2018 Aug 3.


Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics.

Sankoff D, Zheng C, Zhang Y, Meidanis J, Lyons E, Tang H.

IEEE/ACM Trans Comput Biol Bioinform. 2018 Jul 31. doi: 10.1109/TCBB.2018.2849377. [Epub ahead of print]


Incidental small cell carcinoma of the gallbladder-an unexpected finding at elective cholecystectomy.

Zarog MA, Lyons EM, O'Leary DP, Byrnes GJ.

J Surg Case Rep. 2018 Jul 24;2018(7):rjy166. doi: 10.1093/jscr/rjy166. eCollection 2018 Jul.


Molecular Profiling of Patients with Pancreatic Cancer: Initial Results from the Know Your Tumor Initiative.

Pishvaian MJ, Bender RJ, Halverson D, Rahib L, Hendifar AE, Mikhail S, Chung V, Picozzi VJ, Sohal D, Blais EM, Mason K, Lyons EE, Matrisian LM, Brody JR, Madhavan S, Petricoin EF 3rd.

Clin Cancer Res. 2018 Oct 15;24(20):5018-5027. doi: 10.1158/1078-0432.CCR-18-0531. Epub 2018 Jun 28.


Four factor prothrombin complex concentrate for warfarin reversal in patients with left ventricular assist devices.

Rimsans J, Levesque A, Lyons E, Sylvester K, Givertz MM, Mehra MR, Stewart GC, Connors JM.

J Thromb Thrombolysis. 2018 Aug;46(2):180-185. doi: 10.1007/s11239-018-1680-8.


NREM parasomnias: a treatment approach based upon a retrospective case series of 512 patients.

Drakatos P, Marples L, Muza R, Higgins S, Gildeh N, Macavei R, Dongol EM, Nesbitt A, Rosenzweig I, Lyons E, d'Ancona G, Steier J, Williams AJ, Kent BD, Leschziner G.

Sleep Med. 2019 Jan;53:181-188. doi: 10.1016/j.sleep.2018.03.021. Epub 2018 Apr 10.


Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived.

Hao Y, Washburn JD, Rosenthal J, Nielsen B, Lyons E, Edger PP, Pires JC, Conant GC.

Genome Biol Evol. 2018 Mar 1;10(3):999-1011. doi: 10.1093/gbe/evy061.


Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization.

Emery M, Willis MMS, Hao Y, Barry K, Oakgrove K, Peng Y, Schmutz J, Lyons E, Pires JC, Edger PP, Conant GC.

PLoS Genet. 2018 Mar 28;14(3):e1007267. doi: 10.1371/journal.pgen.1007267. eCollection 2018 Mar.


EPIC-CoGe: managing and analyzing genomic data.

Nelson ADL, Haug-Baltzell AK, Davey S, Gregory BD, Lyons E.

Bioinformatics. 2018 Aug 1;34(15):2651-2653. doi: 10.1093/bioinformatics/bty106.


Digeneans of northern fur seals Callorhinus ursinus (Pinnipedia: Otariidae) from five subpopulations on St. Paul Island, Alaska.

Kuzmina TA, Tkach VV, Spraker TR, Lyons ET, Kudlai O.

Parasitol Res. 2018 Apr;117(4):1079-1086. doi: 10.1007/s00436-018-5784-z. Epub 2018 Feb 12.


Development of an Outpatient Guideline for Optimal Anticoagulation Bridging in Patients With Durable Mechanical Circulatory Support.

Levesque AA, Rimsans JM, Sylvester KW, Lyons EN, Frankel KA, Coakley LL, Hickey M, Montoya KA, Mehra MR, Givertz MM, Stewart GC, Connors JM.

Crit Pathw Cardiol. 2018 Mar;17(1):32-37. doi: 10.1097/HPC.0000000000000131.


Combination deworming for the control of double-resistant cyathostomin parasites - short and long term consequences.

Scare JA, Lyons ET, Wielgus KM, Nielsen MK.

Vet Parasitol. 2018 Feb 15;251:112-118. doi: 10.1016/j.vetpar.2018.01.010. Epub 2018 Jan 16.


Predictors of enrollment in individual- and couple-based lifestyle intervention trials for cancer survivors.

Cox-Martin E, Song J, Demark-Wahnefried W, Lyons EJ, Basen-Engquist K.

Support Care Cancer. 2018 Jul;26(7):2387-2395. doi: 10.1007/s00520-018-4084-6. Epub 2018 Feb 8.


Stereotype Threat Effects on Learning From a Cognitively Demanding Mathematics Lesson.

Lyons EM, Simms N, Begolli KN, Richland LE.

Cogn Sci. 2018 Mar;42(2):678-690. doi: 10.1111/cogs.12558. Epub 2017 Dec 1.


Strongyloides westeri worm and egg counts in naturally infected young horses.

Miller FL, Bellaw JL, Lyons ET, Nielsen MK.

Vet Parasitol. 2017 Dec 15;248:1-3. doi: 10.1016/j.vetpar.2017.10.010. Epub 2017 Oct 20.


Veterinarian Nominated Common Conditions of Rabbits and Guinea Pigs Compared with Published Literature.

Robinson NJ, Lyons E, Grindlay D, Brennan ML.

Vet Sci. 2017 Nov 22;4(4). pii: E58. doi: 10.3390/vetsci4040058.


Brief Report: Active Ingredients for Adherence to a Tracker-Based Physical Activity Intervention in Older Adults.

Swartz MC, Lewis ZH, Swartz MD, Martinez E, Lyons EJ.

J Appl Gerontol. 2019 Jul;38(7):1023-1034. doi: 10.1177/0733464817739350. Epub 2017 Nov 2.


Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.

Luo MC, Gu YQ, Puiu D, Wang H, Twardziok SO, Deal KR, Huo N, Zhu T, Wang L, Wang Y, McGuire PE, Liu S, Long H, Ramasamy RK, Rodriguez JC, Van SL, Yuan L, Wang Z, Xia Z, Xiao L, Anderson OD, Ouyang S, Liang Y, Zimin AV, Pertea G, Qi P, Bennetzen JL, Dai X, Dawson MW, Müller HG, Kugler K, Rivarola-Duarte L, Spannagl M, Mayer KFX, Lu FH, Bevan MW, Leroy P, Li P, You FM, Sun Q, Liu Z, Lyons E, Wicker T, Salzberg SL, Devos KM, Dvořák J.

Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.


Large-scale DNA Barcode Library Generation for Biomolecule Identification in High-throughput Screens.

Lyons E, Sheridan P, Tremmel G, Miyano S, Sugano S.

Sci Rep. 2017 Oct 24;7(1):13899. doi: 10.1038/s41598-017-12825-2.


Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.


The feasibility and RE-AIM evaluation of the TAME health pilot study.

Lewis ZH, Ottenbacher KJ, Fisher SR, Jennings K, Brown AF, Swartz MC, Martinez E, Lyons EJ.

Int J Behav Nutr Phys Act. 2017 Aug 14;14(1):106. doi: 10.1186/s12966-017-0560-5.


Physical activity and exercise self-regulation in cancer survivors: A qualitative study.

Tsai E, Robertson MC, Lyons EJ, Swartz MC, Basen-Engquist K.

Psychooncology. 2018 Feb;27(2):563-568. doi: 10.1002/pon.4519. Epub 2017 Sep 29.


Social Media and Mobile Technology for Cancer Prevention and Treatment.

Prochaska JJ, Coughlin SS, Lyons EJ.

Am Soc Clin Oncol Educ Book. 2017;37:128-137. doi: 10.14694/EDBK_173841. Review.


Evolinc: A Tool for the Identification and Evolutionary Comparison of Long Intergenic Non-coding RNAs.

Nelson ADL, Devisetty UK, Palos K, Haug-Baltzell AK, Lyons E, Beilstein MA.

Front Genet. 2017 May 9;8:52. doi: 10.3389/fgene.2017.00052. eCollection 2017.


Wild tobacco genomes reveal the evolution of nicotine biosynthesis.

Xu S, Brockmöller T, Navarro-Quezada A, Kuhl H, Gase K, Ling Z, Zhou W, Kreitzer C, Stanke M, Tang H, Lyons E, Pandey P, Pandey SP, Timmermann B, Gaquerel E, Baldwin IT.

Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6133-6138. doi: 10.1073/pnas.1700073114. Epub 2017 May 23.


Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved (Non-model) Organisms.

Joyce BL, Haug-Baltzell AK, Hulvey JP, McCarthy F, Devisetty UK, Lyons E.

J Vis Exp. 2017 May 9;(123). doi: 10.3791/55009.


Efficacy of two extra-label anthelmintic formulations against equine strongyles in Cuba.

Salas-Romero J, Gomez-Cabrera K, Molento MB, Lyons ET, Delgado A, González L, Arenal A, Nielsen MK.

Vet Parasitol Reg Stud Reports. 2017 May;8:39-42. doi: 10.1016/j.vprsr.2017.01.010. Epub 2017 Feb 1.


Efficacy of moxidectin and an ivermectin-praziquantel combination against ascarids, strongyles, and tapeworms in Thoroughbred yearlings in field tests on a farm in Central Kentucky in 2016.

Lyons ET, Bellaw JL, Dorton AR, Tolliver SC.

Vet Parasitol Reg Stud Reports. 2017 May;8:123-126. doi: 10.1016/j.vprsr.2017.03.006. Epub 2017 Mar 20.


A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.

Foley SW, Gosai SJ, Wang D, Selamoglu N, Sollitti AC, Köster T, Steffen A, Lyons E, Daldal F, Garcia BA, Staiger D, Deal RB, Gregory BD.

Dev Cell. 2017 Apr 24;41(2):204-220.e5. doi: 10.1016/j.devcel.2017.03.018.


Effect of Home- and Community-Based Physical Activity Interventions on Physical Function Among Cancer Survivors: A Systematic Review and Meta-Analysis.

Swartz MC, Lewis ZH, Lyons EJ, Jennings K, Middleton A, Deer RR, Arnold D, Dresser K, Ottenbacher KJ, Goodwin JS.

Arch Phys Med Rehabil. 2017 Aug;98(8):1652-1665. doi: 10.1016/j.apmr.2017.03.017. Epub 2017 Apr 17. Review.


SynMap2 and SynMap3D: web-based whole-genome synteny browsers.

Haug-Baltzell A, Stephens SA, Davey S, Scheidegger CE, Lyons E.

Bioinformatics. 2017 Jul 15;33(14):2197-2198. doi: 10.1093/bioinformatics/btx144.


Encysted cyathostomin larvae in foals - progression of stages and the effect of seasonality.

Nielsen MK, Lyons ET.

Vet Parasitol. 2017 Mar 15;236:108-112. doi: 10.1016/j.vetpar.2017.02.013. Epub 2017 Feb 20.


Mobile Health Physical Activity Intervention Preferences in Cancer Survivors: A Qualitative Study.

Robertson MC, Tsai E, Lyons EJ, Srinivasan S, Swartz MC, Baum ML, Basen-Engquist KM.

JMIR Mhealth Uhealth. 2017 Jan 24;5(1):e3. doi: 10.2196/mhealth.6970.


Getting Research on Games for Health Funded.

Baranowski T, Blumberg F, Gao Z, Kato PM, Kok G, Lu AS, Lyons EJ, Morrill BA, Peng W, Prins PJ, Snyder L, Staiano AE, Thompson D.

Games Health J. 2017 Feb;6(1):1-8. doi: 10.1089/g4h.2016.0106. Epub 2016 Dec 27. No abstract available.

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