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Items: 1 to 50 of 141

1.

GCAC: galaxy workflow system for predictive model building for virtual screening.

Bharti DR, Hemrom AJ, Lynn AM.

BMC Bioinformatics. 2019 Feb 4;19(Suppl 13):550. doi: 10.1186/s12859-018-2492-8.

2.

Information theoretic measures and mutagenesis identify a novel linchpin residue involved in substrate selection within the nucleotide-binding domain of an ABCG family exporter Cdr1p.

Banerjee A, Vishwakarma P, Kumar A, Lynn AM, Prasad R.

Arch Biochem Biophys. 2019 Mar 15;663:143-150. doi: 10.1016/j.abb.2019.01.013. Epub 2019 Jan 14.

PMID:
30653962
3.

The E-helix is a central core in a conserved helical bundle involved in nucleotide binding and transmembrane domain intercalation in the ABC transporter superfamily.

Vishwakarma P, Banerjee A, Pasrija R, Prasad R, Lynn AM.

Int J Biol Macromol. 2019 Jan 9;127:95-106. doi: 10.1016/j.ijbiomac.2019.01.030. [Epub ahead of print]

PMID:
30639597
4.

Standardization of virtual-screening and post-processing protocols relevant to in-silico drug discovery.

Gupta S, Lynn AM, Gupta V.

3 Biotech. 2018 Dec;8(12):504. doi: 10.1007/s13205-018-1523-5. Epub 2018 Nov 30.

PMID:
30555765
5.

Corrigendum: Inflammation and Tissue Remodeling in the Bladder and Urethra in Feline Interstitial Cystitis.

Kullmann FA, McDonnell BM, Wolf-Johnston AS, Lynn AM, Giglio D, Getchell SE, Ruiz WG, Zabbarova IV, Ikeda Y, Kanai AJ, Roppolo JR, Bastacky SI, Apodaca G, Buffington CAT, Birder LA.

Front Syst Neurosci. 2018 Nov 8;12:58. doi: 10.3389/fnsys.2018.00058. eCollection 2018.

6.

Protein folding: Molecular dynamics simulations and in vitro studies for probing mechanism of urea- and guanidinium chloride-induced unfolding of horse cytochrome-c.

Khan SH, Prakash A, Pandey P, Lynn AM, Islam A, Hassan MI, Ahmad F.

Int J Biol Macromol. 2019 Feb 1;122:695-704. doi: 10.1016/j.ijbiomac.2018.10.186. Epub 2018 Oct 30.

PMID:
30389526
7.

Enrollment challenges in multicenter, international studies: The example of the GAS trial.

Gentry KR, Arnup SJ, Disma N, Dorris L, de Graaff JC, Hunyady A, Morton NS, Withington DE, McCann ME, Davidson AJ, Lynn AM; GAS Trial Consortium.

Paediatr Anaesth. 2019 Jan;29(1):51-58. doi: 10.1111/pan.13522. Epub 2018 Oct 29.

PMID:
30375133
8.

Phylogenetic and conservation analyses of MFS transporters.

Vishwakarma P, Banerjee A, Pasrija R, Prasad R, Lynn AM.

3 Biotech. 2018 Nov;8(11):462. doi: 10.1007/s13205-018-1476-8. Epub 2018 Oct 27.

PMID:
30370203
9.

Exploring the aggregation-prone regions from structural domains of human TDP-43.

Kumar V, Wahiduzzaman, Prakash A, Tomar AK, Srivastava A, Kundu B, Lynn AM, Imtaiyaz Hassan M.

Biochim Biophys Acta Proteins Proteom. 2019 Mar;1867(3):286-296. doi: 10.1016/j.bbapap.2018.10.008. Epub 2018 Oct 11.

PMID:
30315897
10.

Phylogenetic Analysis of the vesicular fusion SNARE machinery revealing its functional divergence across Eukaryotes.

Khurana GK, Vishwakarma P, Puri N, Lynn AM.

Bioinformation. 2018 Jul 31;14(7):361-368. doi: 10.6026/97320630014361. eCollection 2018.

11.

ABC transportome inventory of human pathogenic yeast Candida glabrata: Phylogenetic and expression analysis.

Kumari S, Kumar M, Khandelwal NK, Kumari P, Varma M, Vishwakarma P, Shahi G, Sharma S, Lynn AM, Prasad R, Gaur NA.

PLoS One. 2018 Aug 28;13(8):e0202993. doi: 10.1371/journal.pone.0202993. eCollection 2018.

12.

Involvement of TRPM4 in detrusor overactivity following spinal cord transection in mice.

Kullmann FA, Beckel JM, McDonnell B, Gauthier C, Lynn AM, Wolf-Johnston A, Kanai A, Zabbarova IV, Ikeda Y, de Groat WC, Birder LA.

Naunyn Schmiedebergs Arch Pharmacol. 2018 Nov;391(11):1191-1202. doi: 10.1007/s00210-018-1542-0. Epub 2018 Jul 27.

PMID:
30054681
13.

Insights into the DNA binding induced thermal stabilization of transcription factor FOXP3.

Prakash A, Kumar V, Lynn AM, Haque R.

J Biomol Struct Dyn. 2018 Nov 13:1-11. doi: 10.1080/07391102.2018.1486228. [Epub ahead of print]

PMID:
30047314
14.

Visits to Pediatric Clinics by Adult Patients: A Nationwide Survey in Taiwan.

Lee KL, Lynn AM, Chen TJ, Yang LY, Chiang SC.

Int J Environ Res Public Health. 2018 Jul 20;15(7). pii: E1538. doi: 10.3390/ijerph15071538.

15.

Inventory of ABC proteins and their putative role in salt and drug tolerance in Debaryomyces hansenii.

Wasi M, Khandelwal NK, Vishwakarma P, Lynn AM, Mondal AK, Prasad R.

Gene. 2018 Nov 15;676:227-242. doi: 10.1016/j.gene.2018.07.029. Epub 2018 Jul 17.

PMID:
30025928
16.

Illuminating the Black Box: The Real Risk of Serious Infection With Inflammatory Bowel Disease Therapies.

Lynn AM, Loftus EV Jr.

Gastroenterology. 2018 Aug;155(2):262-265. doi: 10.1053/j.gastro.2018.06.053. Epub 2018 Jul 5. No abstract available.

PMID:
29966613
17.

Safe and effective glycaemic control in premature infants: observational clinical results from the computerised STAR-GRYPHON protocol.

Knopp JL, Lynn AM, Shaw GM, Chase JG.

Arch Dis Child Fetal Neonatal Ed. 2018 Jun 21. pii: fetalneonatal-2017-314072. doi: 10.1136/archdischild-2017-314072. [Epub ahead of print]

PMID:
29930148
18.

Inflammation and Tissue Remodeling in the Bladder and Urethra in Feline Interstitial Cystitis.

Kullmann FA, McDonnell BM, Wolf-Johnston AS, Lynn AM, Giglio D, Getchell SE, Ruiz WG, Zabbarova IV, Ikeda Y, Kanai AJ, Roppolo JR, Bastacky SI, Apodaca G, Buffington CAT, Birder LA.

Front Syst Neurosci. 2018 Apr 13;12:13. doi: 10.3389/fnsys.2018.00013. eCollection 2018. Erratum in: Front Syst Neurosci. 2018 Nov 08;12:58.

19.

TFE-induced local unfolding and fibrillation of SOD1: bridging the experiment and simulation studies.

Kumar V, Prakash A, Pandey P, Lynn AM, Hassan MI.

Biochem J. 2018 May 18;475(10):1701-1719. doi: 10.1042/BCJ20180085.

PMID:
29686043
20.

Alterations in local stability and dynamics of A4V SOD1 in the presence of trifluoroethanol.

Kumar V, Prakash A, Lynn AM.

Biopolymers. 2018 Mar;109(3):e23102. doi: 10.1002/bip.23102. Epub 2018 Jan 25.

PMID:
29369331
21.

Comparative analysis of thermal unfolding simulations of RNA recognition motifs (RRMs) of TAR DNA-binding protein 43 (TDP-43).

Prakash A, Kumar V, Meena NK, Hassan MI, Lynn AM.

J Biomol Struct Dyn. 2019 Jan;37(1):178-194. doi: 10.1080/07391102.2017.1422026. Epub 2018 Jan 10.

PMID:
29279008
22.

Clinical trial designs and models for analgesic medications for acute pain in neonates, infants, toddlers, children, and adolescents: ACTTION recommendations.

Walco GA, Kopecky EA, Weisman SJ, Stinson J, Stevens B, Desjardins PJ, Berde CB, Krane EJ, Anand KJS, Yaster M, Dampier CD, Dworkin RH, Gilron I, Lynn AM, Maxwell LG, Raja S, Schachtel B, Turk DC.

Pain. 2018 Feb;159(2):193-205. doi: 10.1097/j.pain.0000000000001104.

23.

Exploring the interaction between Mycobacterium tuberculosis enolase and human plasminogen using computational methods and experimental techniques.

Rahi A, Dhiman A, Singh D, Lynn AM, Rehan M, Bhatnagar R.

J Cell Biochem. 2018 Feb;119(2):2408-2417. doi: 10.1002/jcb.26403. Epub 2017 Oct 18.

PMID:
28888036
24.

Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: a molecular dynamics simulation study.

Prakash A, Kumar V, Pandey P, Bharti DR, Vishwakarma P, Singh R, Hassan MI, Lynn AM.

J Biomol Struct Dyn. 2018 Aug;36(10):2605-2617. doi: 10.1080/07391102.2017.1364670. Epub 2017 Aug 20.

PMID:
28782426
25.

Elucidation of stable intermediates in urea-induced unfolding pathway of human carbonic anhydrase IX.

Prakash A, Dixit G, Meena NK, Singh R, Vishwakarma P, Mishra S, Lynn AM.

J Biomol Struct Dyn. 2018 Jul;36(9):2391-2406. doi: 10.1080/07391102.2017.1355847. Epub 2017 Jul 28.

PMID:
28705076
26.

QSAR based predictive modeling for anti-malarial molecules.

Bharti DR, Lynn AM.

Bioinformation. 2017 May 31;13(5):154-159. doi: 10.6026/97320630013154. eCollection 2017.

27.

Identification of inhibitors against α-Isopropylmalate Synthase of Mycobacterium tuberculosis using docking-MM/PBSA hybrid approach.

Pandey P, Lynn AM, Bandyopadhyay P.

Bioinformation. 2017 May 31;13(5):144-148. doi: 10.6026/97320630013144. eCollection 2017.

28.

A review of perioperative anesthesia and analgesia for infants: updates and trends to watch.

Martin LD, Jimenez N, Lynn AM.

F1000Res. 2017 Feb 8;6:120. doi: 10.12688/f1000research.10272.1. eCollection 2017. Review.

29.

Reply.

Lynn AM, Leise MD.

Liver Transpl. 2016 Dec;22(12):1736-1737. doi: 10.1002/lt.24647. No abstract available.

30.

Design, synthesis, in-silico and biological evaluation of novel donepezil derivatives as multi-target-directed ligands for the treatment of Alzheimer's disease.

Mishra CB, Kumari S, Manral A, Prakash A, Saini V, Lynn AM, Tiwari M.

Eur J Med Chem. 2017 Jan 5;125:736-750. doi: 10.1016/j.ejmech.2016.09.057. Epub 2016 Sep 19.

PMID:
27721157
31.

Engineering Nucleotide Specificity of Succinyl-CoA Synthetase in Blastocystis: The Emerging Role of Gatekeeper Residues.

Vashisht K, Verma S, Gupta S, Lynn AM, Dixit R, Mishra N, Valecha N, Hamblin KA, Maytum R, Pandey KC, van der Giezen M.

Biochemistry. 2017 Jan 24;56(3):534-542. doi: 10.1021/acs.biochem.6b00098. Epub 2017 Jan 11.

32.

Identification of putative Z-ring-associated proteins, involved in cell division in human pathogenic bacteria Helicobacter pylori.

Kamran M, Sinha S, Dubey P, Lynn AM, Dhar SK.

FEBS Lett. 2016 Jul;590(14):2158-71. doi: 10.1002/1873-3468.12230. Epub 2016 Jun 29.

33.

The Feasibility of Developing an Inpatient Acupuncture Program at a Tertiary Care Pediatric Hospital.

Ralston-Wilson J, Artola E, Lynn AM, Doorenbos AZ.

J Altern Complement Med. 2016 Jun;22(6):458-64. doi: 10.1089/acm.2015.0347. Epub 2016 May 20.

34.

Embolization of portosystemic shunts for treatment of medically refractory hepatic encephalopathy.

Lynn AM, Singh S, Congly SE, Khemani D, Johnson DH, Wiesner RH, Kamath PS, Andrews JC, Leise MD.

Liver Transpl. 2016 Jun;22(6):723-31. doi: 10.1002/lt.24440.

35.

Ethnobotanical perspective of antimalarial plants: traditional knowledge based study.

Qayum A, Arya R, Lynn AM.

BMC Res Notes. 2016 Feb 4;9:67. doi: 10.1186/s13104-015-1827-z.

36.

Ambulatory Care Visits to Pediatricians in Taiwan: A Nationwide Analysis.

Yang LY, Lynn AM, Chen TJ.

Int J Environ Res Public Health. 2015 Nov 2;12(11):14043-54. doi: 10.3390/ijerph121114043.

37.

Functional mismatch in a bumble bee pollination mutualism under climate change.

Miller-Struttmann NE, Geib JC, Franklin JD, Kevan PG, Holdo RM, Ebert-May D, Lynn AM, Kettenbach JA, Hedrick E, Galen C.

Science. 2015 Sep 25;349(6255):1541-4. doi: 10.1126/science.aab0868. Epub 2015 Sep 24.

PMID:
26404836
38.

Characteristics of ambulatory care visits to family medicine specialists in Taiwan: a nationwide analysis.

Lynn AM, Shih TC, Hung CH, Lin MH, Hwang SJ, Chen TJ.

PeerJ. 2015 Aug 6;3:e1145. doi: 10.7717/peerj.1145. eCollection 2015.

39.

Dead-End Elimination with a Polarizable Force Field Repacks PCNA Structures.

LuCore SD, Litman JM, Powers KT, Gao S, Lynn AM, Tollefson WT, Fenn TD, Washington MT, Schnieders MJ.

Biophys J. 2015 Aug 18;109(4):816-26. doi: 10.1016/j.bpj.2015.06.062.

40.

Development of the Avian Dorsal Thalamus: Patterns and Gradients of Neurogenesis.

Lynn AM, Schneider DA, Bruce LL.

Brain Behav Evol. 2015;86(2):94-109. doi: 10.1159/000435803. Epub 2015 Aug 12.

PMID:
26279277
41.

Pattern of Ambulatory Care Visits to Obstetrician-Gynecologists in Taiwan: A Nationwide Analysis.

Lynn AM, Lai LJ, Lin MH, Chen TJ, Hwang SJ, Wang PH.

Int J Environ Res Public Health. 2015 Jun 16;12(6):6832-41. doi: 10.3390/ijerph120606832.

42.

Socio-economic, epidemiological and geographic features based on GIS-integrated mapping to identify malarial hotspots.

Qayum A, Arya R, Kumar P, Lynn AM.

Malar J. 2015 May 7;14:192. doi: 10.1186/s12936-015-0685-4.

43.

Functional analysis of TPM domain containing Rv2345 of Mycobacterium tuberculosis identifies its phosphatase activity.

Sinha A, Eniyan K, Sinha S, Lynn AM, Bajpai U.

Protein Expr Purif. 2015 Jul;111:23-7. doi: 10.1016/j.pep.2015.03.003. Epub 2015 Mar 14.

PMID:
25782739
44.

MetaNET--a web-accessible interactive platform for biological metabolic network analysis.

Narang P, Khan S, Hemrom AJ; Open Source Drug Discovery Consortium, Lynn AM.

BMC Syst Biol. 2014;8:130. doi: 10.1186/s12918-014-0130-2. Epub 2014 Dec 5.

45.

Structure based virtual screening to identify inhibitors against MurE Enzyme of Mycobacterium tuberculosis using AutoDock Vina.

Singh S, Bajpai U, Lynn AM.

Bioinformation. 2014 Nov 27;10(11):697-702. doi: 10.6026/97320630010697. eCollection 2014.

46.

HMM-ModE: implementation, benchmarking and validation with HMMER3.

Sinha S, Lynn AM.

BMC Res Notes. 2014 Jul 30;7:483. doi: 10.1186/1756-0500-7-483.

47.

Postpartum eclampsia with cerebral air embolism.

Lynn AM, Yang MJ, Wang PH, Chang CM, Chen CY, Hwang SJ, Yen MS, Chao KC.

Taiwan J Obstet Gynecol. 2013 Sep;52(3):431-4. doi: 10.1016/j.tjog.2012.08.004. No abstract available.

48.

High temperature unfolding of a truncated hemoglobin by molecular dynamics simulation.

Sharma RD, Kanwal R, Lynn AM, Singh P, Pasha ST, Fatma T, Jawaid S.

J Mol Model. 2013 Sep;19(9):3993-4002. doi: 10.1007/s00894-013-1919-4. Epub 2013 Jul 10.

PMID:
23839248
49.

Insight into pleiotropic drug resistance ATP-binding cassette pump drug transport through mutagenesis of Cdr1p transmembrane domains.

Rawal MK, Khan MF, Kapoor K, Goyal N, Sen S, Saxena AK, Lynn AM, Tyndall JD, Monk BC, Cannon RD, Komath SS, Prasad R.

J Biol Chem. 2013 Aug 23;288(34):24480-93. doi: 10.1074/jbc.M113.488353. Epub 2013 Jul 3.

50.

Rationally designed transmembrane peptide mimics of the multidrug transporter protein Cdr1 act as antagonists to selectively block drug efflux and chemosensitize azole-resistant clinical isolates of Candida albicans.

Maurya IK, Thota CK, Verma SD, Sharma J, Rawal MK, Ravikumar B, Sen S, Chauhan N, Lynn AM, Chauhan VS, Prasad R.

J Biol Chem. 2013 Jun 7;288(23):16775-87. doi: 10.1074/jbc.M113.467159. Epub 2013 Apr 16.

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