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Items: 44

1.

Functional expression of a bacterial α-ketoglutarate dehydrogenase in the cytosol of Saccharomyces cerevisiae.

Baldi N, Dykstra JC, Luttik MAH, Pabst M, Wu L, Benjamin KR, Vente A, Pronk JT, Mans R.

Metab Eng. 2019 Dec;56:190-197. doi: 10.1016/j.ymben.2019.10.001. Epub 2019 Oct 1.

2.

Phenotype-Independent Isolation of Interspecies Saccharomyces Hybrids by Dual-Dye Fluorescent Staining and Fluorescence-Activated Cell Sorting.

Gorter de Vries AR, Koster CC, Weening SM, Luttik MAH, Kuijpers NGA, Geertman JA, Pronk JT, Daran JG.

Front Microbiol. 2019 Apr 26;10:871. doi: 10.3389/fmicb.2019.00871. eCollection 2019.

3.

Laboratory evolution and physiological analysis of Saccharomyces cerevisiae strains dependent on sucrose uptake via the Phaseolus vulgaris Suf1 transporter.

Marques WL, van der Woude LN, Luttik MAH, van den Broek M, Nijenhuis JM, Pronk JT, van Maris AJA, Mans R, Gombert AK.

Yeast. 2018 Dec;35(12):639-652. doi: 10.1002/yea.3357. Epub 2018 Oct 15.

4.

Pathway swapping: Toward modular engineering of essential cellular processes.

Kuijpers NG, Solis-Escalante D, Luttik MA, Bisschops MM, Boonekamp FJ, van den Broek M, Pronk JT, Daran JM, Daran-Lapujade P.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15060-15065. doi: 10.1073/pnas.1606701113. Epub 2016 Dec 12.

5.

Extreme calorie restriction in yeast retentostats induces uniform non-quiescent growth arrest.

Bisschops MM, Luttik MA, Doerr A, Verheijen PJ, Bruggeman F, Pronk JT, Daran-Lapujade P.

Biochim Biophys Acta Mol Cell Res. 2017 Jan;1864(1):231-242. doi: 10.1016/j.bbamcr.2016.11.002. Epub 2016 Nov 4.

6.

Requirements for Carnitine Shuttle-Mediated Translocation of Mitochondrial Acetyl Moieties to the Yeast Cytosol.

van Rossum HM, Kozak BU, Niemeijer MS, Dykstra JC, Luttik MA, Daran JM, van Maris AJ, Pronk JT.

MBio. 2016 May 3;7(3). pii: e00520-16. doi: 10.1128/mBio.00520-16.

7.

Alternative reactions at the interface of glycolysis and citric acid cycle in Saccharomyces cerevisiae.

van Rossum HM, Kozak BU, Niemeijer MS, Duine HJ, Luttik MA, Boer VM, Kötter P, Daran JM, van Maris AJ, Pronk JT.

FEMS Yeast Res. 2016 May;16(3). pii: fow017. doi: 10.1093/femsyr/fow017. Epub 2016 Feb 18.

8.

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains.

van den Broek M, Bolat I, Nijkamp JF, Ramos E, Luttik MA, Koopman F, Geertman JM, de Ridder D, Pronk JT, Daran JM.

Appl Environ Microbiol. 2015 Sep;81(18):6253-67. doi: 10.1128/AEM.01263-15. Epub 2015 Jul 6.

9.

Functional expression of a heterologous nickel-dependent, ATP-independent urease in Saccharomyces cerevisiae.

Milne N, Luttik MAH, Cueto Rojas HF, Wahl A, van Maris AJA, Pronk JT, Daran JM.

Metab Eng. 2015 Jul;30:130-140. doi: 10.1016/j.ymben.2015.05.003. Epub 2015 May 30.

10.

Engineering acetyl coenzyme A supply: functional expression of a bacterial pyruvate dehydrogenase complex in the cytosol of Saccharomyces cerevisiae.

Kozak BU, van Rossum HM, Luttik MA, Akeroyd M, Benjamin KR, Wu L, de Vries S, Daran JM, Pronk JT, van Maris AJ.

MBio. 2014 Oct 21;5(5):e01696-14. doi: 10.1128/mBio.01696-14.

11.

Carbon dioxide fixation by Calvin-Cycle enzymes improves ethanol yield in yeast.

Guadalupe-Medina V, Wisselink HW, Luttik MA, de Hulster E, Daran JM, Pronk JT, van Maris AJ.

Biotechnol Biofuels. 2013 Aug 29;6(1):125. doi: 10.1186/1754-6834-6-125.

12.

Transcriptome-based characterization of interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in lactose-grown chemostat cocultures.

Mendes F, Sieuwerts S, de Hulster E, Almering MJ, Luttik MA, Pronk JT, Smid EJ, Bron PA, Daran-Lapujade P.

Appl Environ Microbiol. 2013 Oct;79(19):5949-61. doi: 10.1128/AEM.01115-13. Epub 2013 Jul 19.

13.

Toward pectin fermentation by Saccharomyces cerevisiae: expression of the first two steps of a bacterial pathway for D-galacturonate metabolism.

Huisjes EH, Luttik MA, Almering MJ, Bisschops MM, Dang DH, Kleerebezem M, Siezen R, van Maris AJ, Pronk JT.

J Biotechnol. 2012 Dec 31;162(2-3):303-10. doi: 10.1016/j.jbiotec.2012.10.003. Epub 2012 Oct 16.

PMID:
23079077
14.

Substrate specificity of thiamine pyrophosphate-dependent 2-oxo-acid decarboxylases in Saccharomyces cerevisiae.

Romagnoli G, Luttik MA, Kötter P, Pronk JT, Daran JM.

Appl Environ Microbiol. 2012 Nov;78(21):7538-48. doi: 10.1128/AEM.01675-12. Epub 2012 Aug 17.

15.

Metabolic engineering of β-oxidation in Penicillium chrysogenum for improved semi-synthetic cephalosporin biosynthesis.

Veiga T, Gombert AK, Landes N, Verhoeven MD, Kiel JA, Krikken AM, Nijland JG, Touw H, Luttik MA, van der Toorn JC, Driessen AJ, Bovenberg RA, van den Berg MA, van der Klei IJ, Pronk JT, Daran JM.

Metab Eng. 2012 Jul;14(4):437-48. doi: 10.1016/j.ymben.2012.02.004. Epub 2012 Feb 22.

16.

De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology.

Nijkamp JF, van den Broek M, Datema E, de Kok S, Bosman L, Luttik MA, Daran-Lapujade P, Vongsangnak W, Nielsen J, Heijne WH, Klaassen P, Paddon CJ, Platt D, Kötter P, van Ham RC, Reinders MJ, Pronk JT, de Ridder D, Daran JM.

Microb Cell Fact. 2012 Mar 26;11:36. doi: 10.1186/1475-2859-11-36.

17.

Subunits Rip1p and Cox9p of the respiratory chain contribute to diclofenac-induced mitochondrial dysfunction.

van Leeuwen JS, Orij R, Luttik MA, Smits GJ, Vermeulen NP, Vos JC.

Microbiology. 2011 Mar;157(Pt 3):685-94. doi: 10.1099/mic.0.044578-0. Epub 2010 Dec 9.

PMID:
21148204
18.

A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions.

Helbig AO, de Groot MJ, van Gestel RA, Mohammed S, de Hulster EA, Luttik MA, Daran-Lapujade P, Pronk JT, Heck AJ, Slijper M.

Proteomics. 2009 Oct;9(20):4787-98. doi: 10.1002/pmic.200800951.

PMID:
19750512
19.

Identity of the growth-limiting nutrient strongly affects storage carbohydrate accumulation in anaerobic chemostat cultures of Saccharomyces cerevisiae.

Hazelwood LA, Walsh MC, Luttik MA, Daran-Lapujade P, Pronk JT, Daran JM.

Appl Environ Microbiol. 2009 Nov;75(21):6876-85. doi: 10.1128/AEM.01464-09. Epub 2009 Sep 4.

20.

An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D.

Daran-Lapujade P, Daran JM, Luttik MA, Almering MJ, Pronk JT, Kötter P.

FEMS Yeast Res. 2009 Aug;9(5):789-92. doi: 10.1111/j.1567-1364.2009.00530.x. Epub 2009 May 14.

21.

Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: quantification of metabolic impact.

Luttik MA, Vuralhan Z, Suir E, Braus GH, Pronk JT, Daran JM.

Metab Eng. 2008 May-Jul;10(3-4):141-53. doi: 10.1016/j.ymben.2008.02.002. Epub 2008 Feb 20.

PMID:
18372204
22.

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.

Daran-Lapujade P, Rossell S, van Gulik WM, Luttik MA, de Groot MJ, Slijper M, Heck AJ, Daran JM, de Winde JH, Westerhoff HV, Pronk JT, Bakker BM.

Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15753-8. Epub 2007 Sep 26.

23.

Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae.

Tai SL, Snoek I, Luttik MA, Almering MJ, Walsh MC, Pronk JT, Daran JM.

Microbiology. 2007 Mar;153(Pt 3):877-86.

24.

Control of the glycolytic flux in Saccharomyces cerevisiae grown at low temperature: a multi-level analysis in anaerobic chemostat cultures.

Tai SL, Daran-Lapujade P, Luttik MA, Walsh MC, Diderich JA, Krijger GC, van Gulik WM, Pronk JT, Daran JM.

J Biol Chem. 2007 Apr 6;282(14):10243-51. Epub 2007 Jan 24.

25.

Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status.

van Maris AJ, Abbott DA, Bellissimi E, van den Brink J, Kuyper M, Luttik MA, Wisselink HW, Scheffers WA, van Dijken JP, Pronk JT.

Antonie Van Leeuwenhoek. 2006 Nov;90(4):391-418. Epub 2006 Oct 11. Review.

PMID:
17033882
26.

Enzymic analysis of NADPH metabolism in beta-lactam-producing Penicillium chrysogenum: presence of a mitochondrial NADPH dehydrogenase.

Harris DM, Diderich JA, van der Krogt ZA, Luttik MA, Raamsdonk LM, Bovenberg RA, van Gulik WM, van Dijken JP, Pronk JT.

Metab Eng. 2006 Mar;8(2):91-101. Epub 2005 Oct 25.

PMID:
16253533
27.

Physiological characterization of the ARO10-dependent, broad-substrate-specificity 2-oxo acid decarboxylase activity of Saccharomyces cerevisiae.

Vuralhan Z, Luttik MA, Tai SL, Boer VM, Morais MA, Schipper D, Almering MJ, Kötter P, Dickinson JR, Daran JM, Pronk JT.

Appl Environ Microbiol. 2005 Jun;71(6):3276-84.

28.
29.

Metabolic engineering of glycerol production in Saccharomyces cerevisiae.

Overkamp KM, Bakker BM, Kötter P, Luttik MA, Van Dijken JP, Pronk JT.

Appl Environ Microbiol. 2002 Jun;68(6):2814-21.

30.

Functional analysis of structural genes for NAD(+)-dependent formate dehydrogenase in Saccharomyces cerevisiae.

Overkamp KM, Kötter P, van der Hoek R, Schoondermark-Stolk S, Luttik MA, van Dijken JP, Pronk JT.

Yeast. 2002 Apr;19(6):509-20.

31.

Novel pathway for alcoholic fermentation of delta-gluconolactone in the yeast Saccharomyces bulderi.

van Dijken JP, van Tuijl A, Luttik MA, Middelhoven WJ, Pronk JT.

J Bacteriol. 2002 Feb;184(3):672-8.

32.

Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae.

Bakker BM, Overkamp KM, van Maris AJ, Kötter P, Luttik MA, van Dijken JP, Pronk JT.

FEMS Microbiol Rev. 2001 Jan;25(1):15-37. Review.

33.

The Saccharomyces cerevisiae ICL2 gene encodes a mitochondrial 2-methylisocitrate lyase involved in propionyl-coenzyme A metabolism.

Luttik MA, Kötter P, Salomons FA, van der Klei IJ, van Dijken JP, Pronk JT.

J Bacteriol. 2000 Dec;182(24):7007-13.

34.

The mitochondrial alcohol dehydrogenase Adh3p is involved in a redox shuttle in Saccharomyces cerevisiae.

Bakker BM, Bro C, Kötter P, Luttik MA, van Dijken JP, Pronk JT.

J Bacteriol. 2000 Sep;182(17):4730-7.

35.

By-product formation during exposure of respiring Saccharomyces cerevisiae cultures to excess glucose is not caused by a limited capacity of pyruvate carboxylase.

Bauer J, Luttik MA, Flores CL, van Dijken JP, Pronk JT, Niederberger P.

FEMS Microbiol Lett. 1999 Oct 1;179(1):107-13.

36.
37.

Glucose uptake kinetics and transcription of HXT genes in chemostat cultures of Saccharomyces cerevisiae.

Diderich JA, Schepper M, van Hoek P, Luttik MA, van Dijken JP, Pronk JT, Klaassen P, Boelens HF, de Mattos MJ, van Dam K, Kruckeberg AL.

J Biol Chem. 1999 May 28;274(22):15350-9.

38.

Inactivation of the Kluyveromyces lactis KlPDA1 gene leads to loss of pyruvate dehydrogenase activity, impairs growth on glucose and triggers aerobic alcoholic fermentation.

Zeeman AM, Luttik MA, Thiele C, van Dijken JP, Pronk JT, Steensma HY.

Microbiology. 1998 Dec;144 ( Pt 12):3437-46.

PMID:
9884236
39.

The Saccharomyces cerevisiae NDE1 and NDE2 genes encode separate mitochondrial NADH dehydrogenases catalyzing the oxidation of cytosolic NADH.

Luttik MA, Overkamp KM, Kötter P, de Vries S, van Dijken JP, Pronk JT.

J Biol Chem. 1998 Sep 18;273(38):24529-34.

40.

Overproduction of acetyl-coenzyme A synthetase isoenzymes in respiring Saccharomyces cerevisiae cells does not reduce acetate production after exposure to glucose excess.

de Jong-Gubbels P, van den Berg MA, Luttik MA, Steensma HY, van Dijken JP, Pronk JT.

FEMS Microbiol Lett. 1998 Aug 1;165(1):15-20.

41.

Mechanism of glucose and maltose transport in plasma-membrane vesicles from the yeast Candida utilis.

van den Broek PJ, van Gompel AE, Luttik MA, Pronk JT, van Leeuwen CC.

Biochem J. 1997 Jan 15;321 ( Pt 2):487-95.

42.

Is the Kluyver effect in yeasts caused by product inhibition?

Weusthuis RA, Luttik MA, Scheffers WA, van Dijken JP, Pronk JT.

Microbiology. 1994 Jul;140 ( Pt 7):1723-9.

PMID:
8075808
43.

Energetic aspects of glucose metabolism in a pyruvate-dehydrogenase-negative mutant of Saccharomyces cerevisiae.

Pronk JT, Wenzel TJ, Luttik MA, Klaassen CC, Scheffers WA, Steensma HY, van Dijken JP.

Microbiology. 1994 Mar;140 ( Pt 3):601-10.

PMID:
8012582
44.

Regulation of the PDA1 gene encoding the E1 alpha subunit of the pyruvate dehydrogenase complex from Saccharomyces cerevisiae.

Wenzel TJ, Luttik MA, van den Berg JA, de Steensma HY.

Eur J Biochem. 1993 Dec 1;218(2):405-11.

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