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Items: 18

1.

Discovery of putative breast cancer antigens using an integrative platform of genomics-driven immunoproteomics.

Qendro V, Lundgren DH, Palczewski S, Hegde P, Stevenson C, Perpetua L, Latifi A, Merriman J, Bugos G, Han DK.

Proteomics. 2017 Aug;17(15-16). doi: 10.1002/pmic.201600318.

PMID:
28665052
2.
3.

Large-scale proteomic characterization of melanoma expressed proteins reveals nestin and vimentin as biomarkers that can potentially distinguish melanoma subtypes.

Qendro V, Lundgren DH, Rezaul K, Mahony F, Ferrell N, Bi A, Latifi A, Chowdhury D, Gygi S, Haas W, Wilson L, Murphy M, Han DK.

J Proteome Res. 2014 Nov 7;13(11):5031-40. doi: 10.1021/pr5006789. Epub 2014 Oct 16.

PMID:
25322343
4.

Janus-like opposing roles of CD47 in autoimmune brain inflammation in humans and mice.

Han MH, Lundgren DH, Jaiswal S, Chao M, Graham KL, Garris CS, Axtell RC, Ho PP, Lock CB, Woodard JI, Brownell SE, Zoudilova M, Hunt JF, Baranzini SE, Butcher EC, Raine CS, Sobel RA, Han DK, Weissman I, Steinman L.

J Exp Med. 2012 Jul 2;209(7):1325-34. doi: 10.1084/jem.20101974. Epub 2012 Jun 25.

5.

Subcellular tissue proteomics of hepatocellular carcinoma for molecular signature discovery.

Lee YY, McKinney KQ, Ghosh S, Iannitti DA, Martinie JB, Caballes FR, Russo MW, Ahrens WA, Lundgren DH, Han DK, Bonkovsky HL, Hwang SI.

J Proteome Res. 2011 Nov 4;10(11):5070-83. doi: 10.1021/pr2005204. Epub 2011 Oct 5.

PMID:
21913717
6.

Combined mass spectrometry- and immunohistochemistry-based approach to determine protein expression in archival melanoma--proof of principle.

Rezaul K, Murphy M, Lundgren DH, Wilson L, Han DK.

Pigment Cell Melanoma Res. 2010 Dec;23(6):849-52. doi: 10.1111/j.1755-148X.2010.00774.x. No abstract available.

PMID:
20849468
7.

Discovery of putative pancreatic cancer biomarkers using subcellular proteomics.

McKinney KQ, Lee YY, Choi HS, Groseclose G, Iannitti DA, Martinie JB, Russo MW, Lundgren DH, Han DK, Bonkovsky HL, Hwang SI.

J Proteomics. 2011 Jan 1;74(1):79-88. doi: 10.1016/j.jprot.2010.08.006. Epub 2010 Aug 31.

PMID:
20807598
8.

Differential protein expression profiles in estrogen receptor-positive and -negative breast cancer tissues using label-free quantitative proteomics.

Rezaul K, Thumar JK, Lundgren DH, Eng JK, Claffey KP, Wilson L, Han DK.

Genes Cancer. 2010 Mar;1(3):251-71. doi: 10.1177/1947601910365896.

9.

Role of spectral counting in quantitative proteomics.

Lundgren DH, Hwang SI, Wu L, Han DK.

Expert Rev Proteomics. 2010 Feb;7(1):39-53. doi: 10.1586/epr.09.69. Review.

PMID:
20121475
10.

Protein identification using Sorcerer 2 and SEQUEST.

Lundgren DH, Martinez H, Wright ME, Han DK.

Curr Protoc Bioinformatics. 2009 Dec;Chapter 13:Unit 13.3. doi: 10.1002/0471250953.bi1303s28. Review.

PMID:
19957274
11.

Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions.

Mayya V, Lundgren DH, Hwang SI, Rezaul K, Wu L, Eng JK, Rodionov V, Han DK.

Sci Signal. 2009 Aug 18;2(84):ra46. doi: 10.1126/scisignal.2000007.

12.

Protein identification using TurboSEQUEST.

Lundgren DH, Han DK, Eng JK.

Curr Protoc Bioinformatics. 2005 Jul;Chapter 13:Unit 13.3. doi: 10.1002/0471250953.bi1303s10.

PMID:
18428747
13.

Proteomic analysis of active multiple sclerosis lesions reveals therapeutic targets.

Han MH, Hwang SI, Roy DB, Lundgren DH, Price JV, Ousman SS, Fernald GH, Gerlitz B, Robinson WH, Baranzini SE, Grinnell BW, Raine CS, Sobel RA, Han DK, Steinman L.

Nature. 2008 Feb 28;451(7182):1076-81. doi: 10.1038/nature06559. Epub 2008 Feb 17.

PMID:
18278032
14.

Global survey of human T leukemic cells by integrating proteomics and transcriptomics profiling.

Wu L, Hwang SI, Rezaul K, Lu LJ, Mayya V, Gerstein M, Eng JK, Lundgren DH, Han DK.

Mol Cell Proteomics. 2007 Aug;6(8):1343-53. Epub 2007 May 21.

15.

Proteomics analysis of human coronary atherosclerotic plaque: a feasibility study of direct tissue proteomics by liquid chromatography and tandem mass spectrometry.

Bagnato C, Thumar J, Mayya V, Hwang SI, Zebroski H, Claffey KP, Haudenschild C, Eng JK, Lundgren DH, Han DK.

Mol Cell Proteomics. 2007 Jun;6(6):1088-102. Epub 2007 Mar 5.

16.

Direct cancer tissue proteomics: a method to identify candidate cancer biomarkers from formalin-fixed paraffin-embedded archival tissues.

Hwang SI, Thumar J, Lundgren DH, Rezaul K, Mayya V, Wu L, Eng J, Wright ME, Han DK.

Oncogene. 2007 Jan 4;26(1):65-76. Epub 2006 Jun 26.

PMID:
16799640
17.

Systematic characterization of nuclear proteome during apoptosis: a quantitative proteomic study by differential extraction and stable isotope labeling.

Hwang SI, Lundgren DH, Mayya V, Rezaul K, Cowan AE, Eng JK, Han DK.

Mol Cell Proteomics. 2006 Jun;5(6):1131-45. Epub 2006 Mar 14.

18.

PROTEOME-3D: an interactive bioinformatics tool for large-scale data exploration and knowledge discovery.

Lundgren DH, Eng J, Wright ME, Han DK.

Mol Cell Proteomics. 2003 Nov;2(11):1164-76. Epub 2003 Sep 7.

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