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Items: 13

1.

Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales.

Karasov TL, Almario J, Friedemann C, Ding W, Giolai M, Heavens D, Kersten S, Lundberg DS, Neumann M, Regalado J, Neher RA, Kemen E, Weigel D.

Cell Host Microbe. 2018 Jul 11;24(1):168-179.e4. doi: 10.1016/j.chom.2018.06.011.

2.

Root-exuded coumarin shapes the root microbiome.

Lundberg DS, Teixeira PJPL.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):5629-5631. doi: 10.1073/pnas.1805944115. Epub 2018 May 15. No abstract available.

PMID:
29764997
3.

Genomic features of bacterial adaptation to plants.

Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, Wang K, Devescovi G, Stillman K, Monteiro F, Rangel Alvarez B, Lundberg DS, Lu TY, Lebeis S, Jin Z, McDonald M, Klein AP, Feltcher ME, Rio TG, Grant SR, Doty SL, Ley RE, Zhao B, Venturi V, Pelletier DA, Vorholt JA, Tringe SG, Woyke T, Dangl JL.

Nat Genet. 2018 Jan;50(1):138-150. doi: 10.1038/s41588-017-0012-9. Epub 2017 Dec 18.

4.

Methods for Genotyping-by-Sequencing.

Rowan BA, Seymour DK, Chae E, Lundberg DS, Weigel D.

Methods Mol Biol. 2017;1492:221-242.

PMID:
27822868
5.

Host genotype and age shape the leaf and root microbiomes of a wild perennial plant.

Wagner MR, Lundberg DS, Del Rio TG, Tringe SG, Dangl JL, Mitchell-Olds T.

Nat Commun. 2016 Jul 12;7:12151. doi: 10.1038/ncomms12151.

6.

Learning Microbial Interaction Networks from Metagenomic Count Data.

Biswas S, Mcdonald M, Lundberg DS, Dangl JL, Jojic V.

J Comput Biol. 2016 Jun;23(6):526-35. doi: 10.1089/cmb.2016.0061.

PMID:
27267776
7.

PLANT MICROBIOME. Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa.

Lebeis SL, Paredes SH, Lundberg DS, Breakfield N, Gehring J, McDonald M, Malfatti S, Glavina del Rio T, Jones CD, Tringe SG, Dangl JL.

Science. 2015 Aug 21;349(6250):860-4. doi: 10.1126/science.aaa8764. Epub 2015 Jul 16.

8.

ProDeGe: a computational protocol for fully automated decontamination of genomes.

Tennessen K, Andersen E, Clingenpeel S, Rinke C, Lundberg DS, Han J, Dangl JL, Ivanova N, Woyke T, Kyrpides N, Pati A.

ISME J. 2016 Jan;10(1):269-72. doi: 10.1038/ismej.2015.100. Epub 2015 Jun 9.

9.

MT-Toolbox: improved amplicon sequencing using molecule tags.

Yourstone SM, Lundberg DS, Dangl JL, Jones CD.

BMC Bioinformatics. 2014 Aug 22;15:284. doi: 10.1186/1471-2105-15-284.

10.

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative.

Wagner MR, Lundberg DS, Coleman-Derr D, Tringe SG, Dangl JL, Mitchell-Olds T.

Ecol Lett. 2014 Jun;17(6):717-26. doi: 10.1111/ele.12276. Epub 2014 Apr 4. Erratum in: Ecol Lett. 2015 Feb;18(2):218-20.

11.

Practical innovations for high-throughput amplicon sequencing.

Lundberg DS, Yourstone S, Mieczkowski P, Jones CD, Dangl JL.

Nat Methods. 2013 Oct;10(10):999-1002. doi: 10.1038/nmeth.2634. Epub 2013 Sep 1.

PMID:
23995388
12.

Defining the core Arabidopsis thaliana root microbiome.

Lundberg DS, Lebeis SL, Paredes SH, Yourstone S, Gehring J, Malfatti S, Tremblay J, Engelbrektson A, Kunin V, Del Rio TG, Edgar RC, Eickhorst T, Ley RE, Hugenholtz P, Tringe SG, Dangl JL.

Nature. 2012 Aug 2;488(7409):86-90. doi: 10.1038/nature11237.

13.

The transcriptional regulator AlgR is essential for Pseudomonas aeruginosa pathogenesis.

Lizewski SE, Lundberg DS, Schurr MJ.

Infect Immun. 2002 Nov;70(11):6083-93.

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