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Items: 1 to 50 of 110

1.

Fast reversibly photoswitching red fluorescent proteins for live-cell RESOLFT nanoscopy.

Pennacchietti F, Serebrovskaya EO, Faro AR, Shemyakina II, Bozhanova NG, Kotlobay AA, Gurskaya NG, Bodén A, Dreier J, Chudakov DM, Lukyanov KA, Verkhusha VV, Mishin AS, Testa I.

Nat Methods. 2018 Jul 9. doi: 10.1038/s41592-018-0052-9. [Epub ahead of print]

PMID:
29988095
2.

Fluorescence time-resolved macroimaging.

Shcheslavskiy VI, Shirmanova MV, Dudenkova VV, Lukyanov KA, Gavrina AI, Shumilova AV, Zagaynova E, Becker W.

Opt Lett. 2018 Jul 1;43(13):3152-3155. doi: 10.1364/OL.43.003152.

PMID:
29957804
3.

A genetically encoded fluorescent probe for imaging of oxygenation gradients in living Drosophila.

Lidsky PV, Lukyanov KA, Misra T, Handke B, Mishin AS, Lehner CF.

Development. 2018 Feb 14;145(4). pii: dev156257. doi: 10.1242/dev.156257.

PMID:
29437781
4.

A water-soluble precursor for efficient silica polymerization by silicateins.

Povarova NV, Markina NM, Baranov MS, Barinov NA, Klinov DV, Kozhemyako VB, Lukyanov KA.

Biochem Biophys Res Commun. 2018 Jan 8;495(2):2066-2070. doi: 10.1016/j.bbrc.2017.12.075. Epub 2017 Dec 15.

PMID:
29253563
5.

Generation of Cell Lines Stably Expressing a Fluorescent Reporter of Nonsense-Mediated mRNA Decay Activity.

Markina NM, Pereverzev AP, Staroverov DB, Lukyanov KA, Gurskaya NG.

Methods Mol Biol. 2018;1720:187-204. doi: 10.1007/978-1-4939-7540-2_14.

PMID:
29236260
6.

Protein labeling for live cell fluorescence microscopy with a highly photostable renewable signal.

Bozhanova NG, Baranov MS, Klementieva NV, Sarkisyan KS, Gavrikov AS, Yampolsky IV, Zagaynova EV, Lukyanov SA, Lukyanov KA, Mishin AS.

Chem Sci. 2017 Oct 1;8(10):7138-7142. doi: 10.1039/c7sc01628j. Epub 2017 Aug 3.

7.

Fluorescent protein Dendra2 as a ratiometric genetically encoded pH-sensor.

Pakhomov AA, Martynov VI, Orsa AN, Bondarenko AA, Chertkova RV, Lukyanov KA, Petrenko AG, Deyev IE.

Biochem Biophys Res Commun. 2017 Dec 2;493(4):1518-1521. doi: 10.1016/j.bbrc.2017.09.170. Epub 2017 Oct 3.

PMID:
28986251
8.

Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor.

Kost LA, Nikitin ES, Ivanova VO, Sung U, Putintseva EV, Chudakov DM, Balaban PM, Lukyanov KA, Bogdanov AM.

PLoS One. 2017 Sep 1;12(9):e0184225. doi: 10.1371/journal.pone.0184225. eCollection 2017.

9.

Functioning of Fluorescent Proteins in Aggregates in Anthozoa Species and in Recombinant Artificial Models.

Povarova NV, Petri ND, Blokhina AE, Bogdanov AM, Gurskaya NG, Lukyanov KA.

Int J Mol Sci. 2017 Jul 12;18(7). pii: E1503. doi: 10.3390/ijms18071503.

10.

Yellow and Orange Fluorescent Proteins with Tryptophan-based Chromophores.

Bozhanova NG, Baranov MS, Sarkisyan KS, Gritcenko R, Mineev KS, Golodukhina SV, Baleeva NS, Lukyanov KA, Mishin AS.

ACS Chem Biol. 2017 Jul 21;12(7):1867-1873. doi: 10.1021/acschembio.7b00337. Epub 2017 Jun 6.

PMID:
28525263
11.

Relationship between intracellular pH, metabolic co-factors and caspase-3 activation in cancer cells during apoptosis.

Sergeeva TF, Shirmanova MV, Zlobovskaya OA, Gavrina AI, Dudenkova VV, Lukina MM, Lukyanov KA, Zagaynova EV.

Biochim Biophys Acta. 2017 Mar;1864(3):604-611. doi: 10.1016/j.bbamcr.2016.12.022. Epub 2017 Jan 4.

12.

Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.

Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.

Chem Commun (Camb). 2017 Jan 10;53(5):949-951. doi: 10.1039/c6cc09200d.

PMID:
28044165
13.

Green-to-red primed conversion of Dendra2 using blue and red lasers.

Klementieva NV, Lukyanov KA, Markina NM, Lukyanov SA, Zagaynova EV, Mishin AS.

Chem Commun (Camb). 2016 Nov 18;52(89):13144-13146. Epub 2016 Oct 20.

PMID:
27763646
14.

Fluorescence Imaging of Actin Fine Structure in Tumor Tissues Using SiR-Actin Staining.

Klementieva NV, Snopova LB, Prodanets NN, Furman OE, Dudenkova VV, Zagaynova EV, Lukyanov KA, Mishin AS.

Anticancer Res. 2016 Oct;36(10):5287-5294.

PMID:
27798890
15.

Photoinduced Chemistry in Fluorescent Proteins: Curse or Blessing?

Acharya A, Bogdanov AM, Grigorenko BL, Bravaya KB, Nemukhin AV, Lukyanov KA, Krylov AI.

Chem Rev. 2017 Jan 25;117(2):758-795. doi: 10.1021/acs.chemrev.6b00238. Epub 2016 Oct 18. Review.

PMID:
27754659
16.

Lysosome-associated miniSOG as a photosensitizer for mammalian cells.

Ryumina AP, Serebrovskaya EO, Staroverov DB, Zlobovskaya OA, Shcheglov AS, Lukyanov SA, Lukyanov KA.

Biotechniques. 2016 Aug 1;61(2):92-4. doi: 10.2144/000114445. eCollection 2016.

17.

Analysis of Nonsense-Mediated mRNA Decay at the Single-Cell Level Using Two Fluorescent Proteins.

Gurskaya NG, Pereverzev AP, Staroverov DB, Markina NM, Lukyanov KA.

Methods Enzymol. 2016;572:291-314. doi: 10.1016/bs.mie.2016.02.008. Epub 2016 Mar 25.

PMID:
27241760
18.

Fluorescent Protein-Based Quantification of Alternative Splicing of a Target Cassette Exon in Mammalian Cells.

Gurskaya NG, Staroverov DB, Lukyanov KA.

Methods Enzymol. 2016;572:255-68. doi: 10.1016/bs.mie.2016.02.007. Epub 2016 Mar 11.

PMID:
27241758
19.

Local fitness landscape of the green fluorescent protein.

Sarkisyan KS, Bolotin DA, Meer MV, Usmanova DR, Mishin AS, Sharonov GV, Ivankov DN, Bozhanova NG, Baranov MS, Soylemez O, Bogatyreva NS, Vlasov PK, Egorov ES, Logacheva MD, Kondrashov AS, Chudakov DM, Putintseva EV, Mamedov IZ, Tawfik DS, Lukyanov KA, Kondrashov FA.

Nature. 2016 May 19;533(7603):397-401. doi: 10.1038/nature17995. Epub 2016 May 11.

20.

Turning On and Off Photoinduced Electron Transfer in Fluorescent Proteins by π-Stacking, Halide Binding, and Tyr145 Mutations.

Bogdanov AM, Acharya A, Titelmayer AV, Mamontova AV, Bravaya KB, Kolomeisky AB, Lukyanov KA, Krylov AI.

J Am Chem Soc. 2016 Apr 13;138(14):4807-17. doi: 10.1021/jacs.6b00092. Epub 2016 Apr 5.

21.

Noggin4 is a long-range inhibitor of Wnt8 signalling that regulates head development in Xenopus laevis.

Eroshkin FM, Nesterenko AM, Borodulin AV, Martynova NY, Ermakova GV, Gyoeva FK, Orlov EE, Belogurov AA, Lukyanov KA, Bayramov AV, Zaraisky AG.

Sci Rep. 2016 Mar 14;6:23049. doi: 10.1038/srep23049.

22.

Genetically encoded far-red fluorescent sensors for caspase-3 activity.

Zlobovskaya OA, Sergeeva TF, Shirmanova MV, Dudenkova VV, Sharonov GV, Zagaynova EV, Lukyanov KA.

Biotechniques. 2016 Feb 1;60(2):62-8. doi: 10.2144/000114377. eCollection 2016 Feb.

23.

Green Fluorescence of Cytaeis Hydroids Living in Association with Nassarius Gastropods in the Red Sea.

Prudkovsky AA, Ivanenko VN, Nikitin MA, Lukyanov KA, Belousova A, Reimer JD, Berumen ML.

PLoS One. 2016 Feb 3;11(2):e0146861. doi: 10.1371/journal.pone.0146861. eCollection 2016.

24.

[Differences of Nonsense-Mediated mRNA Degradation Activity in Mammalian Cell Lines Revealed by a Fluorescence Reporter].

Pereverzev AP, Matlashov ME, Staroverov DB, Lukyanov KA, Gurskaya NG.

Bioorg Khim. 2015 Sep-Oct;41(5):587-91. Russian.

PMID:
26762096
25.

Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.

Pletneva NV, Pletnev VZ, Sarkisyan KS, Gorbachev DA, Egorov ES, Mishin AS, Lukyanov KA, Dauter Z, Pletnev S.

PLoS One. 2015 Dec 23;10(12):e0145740. doi: 10.1371/journal.pone.0145740. eCollection 2015.

26.

KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light.

Sarkisyan KS, Zlobovskaya OA, Gorbachev DA, Bozhanova NG, Sharonov GV, Staroverov DB, Egorov ES, Ryabova AV, Solntsev KM, Mishin AS, Lukyanov KA.

PLoS One. 2015 Dec 17;10(12):e0145287. doi: 10.1371/journal.pone.0145287. eCollection 2015.

27.

[Novel Water-Soluble Substrate for Silicateins].

Povarova NV, Baranov MS, Kovalchuk SN, Semiletova IV, Lukyanov KA, Kozhemyak VB.

Bioorg Khim. 2015 May-Jun;41(3):380-2. Russian.

PMID:
26502615
28.

[Infrared Fluorescent Protein iRFP as an Acceptor for Förster Resonance Energy Transfer].

Zlobovskaya OA, Sarkisyan KS, Lukyanov KA.

Bioorg Khim. 2015 May-Jun;41(3):299-304. Russian.

PMID:
26502606
29.

CT26 murine colon carcinoma expressing the red fluorescent protein KillerRed as a highly immunogenic tumor model.

Yuzhakova DV, Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Druzhkova IN, Shakhov BE, Lukyanov SA, Zagaynova EV.

J Biomed Opt. 2015 Aug;20(8):88002. doi: 10.1117/1.JBO.20.8.088002.

PMID:
26277828
30.

Structure of the green fluorescent protein NowGFP with an anionic tryptophan-based chromophore.

Pletnev VZ, Pletneva NV, Sarkisyan KS, Mishin AS, Lukyanov KA, Goryacheva EA, Ziganshin RH, Dauter Z, Pletnev S.

Acta Crystallogr D Biol Crystallogr. 2015 Aug;71(Pt 8):1699-707. doi: 10.1107/S1399004715010159. Epub 2015 Jul 31.

31.

Green fluorescent protein with anionic tryptophan-based chromophore and long fluorescence lifetime.

Sarkisyan KS, Goryashchenko AS, Lidsky PV, Gorbachev DA, Bozhanova NG, Gorokhovatsky AY, Pereverzeva AR, Ryumina AP, Zherdeva VV, Savitsky AP, Solntsev KM, Bommarius AS, Sharonov GV, Lindquist JR, Drobizhev M, Hughes TE, Rebane A, Lukyanov KA, Mishin AS.

Biophys J. 2015 Jul 21;109(2):380-9. doi: 10.1016/j.bpj.2015.06.018.

32.

Fluorescence imaging using synthetic GFP chromophores.

Walker CL, Lukyanov KA, Yampolsky IV, Mishin AS, Bommarius AS, Duraj-Thatte AM, Azizi B, Tolbert LM, Solntsev KM.

Curr Opin Chem Biol. 2015 Aug;27:64-74. doi: 10.1016/j.cbpa.2015.06.002. Epub 2015 Jun 24. Review.

PMID:
26117808
33.

Comparative study reveals better far-red fluorescent protein for whole body imaging.

Luker KE, Pata P, Shemiakina II, Pereverzeva A, Stacer AC, Shcherbo DS, Pletnev VZ, Skolnaja M, Lukyanov KA, Luker GD, Pata I, Chudakov DM.

Sci Rep. 2015 Jun 2;5:10332. doi: 10.1038/srep10332.

34.

Novel uses of fluorescent proteins.

Mishin AS, Belousov VV, Solntsev KM, Lukyanov KA.

Curr Opin Chem Biol. 2015 Aug;27:1-9. doi: 10.1016/j.cbpa.2015.05.002. Epub 2015 May 25. Review.

PMID:
26022943
35.

Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.

Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.

Sci Rep. 2015 Jan 12;5:7729. doi: 10.1038/srep07729.

36.

Red-shifted fluorescent aminated derivatives of a conformationally locked GFP chromophore.

Baranov MS, Solntsev KM, Baleeva NS, Mishin AS, Lukyanov SA, Lukyanov KA, Yampolsky IV.

Chemistry. 2014 Oct 6;20(41):13234-41. doi: 10.1002/chem.201403678. Epub 2014 Aug 29.

PMID:
25171432
37.

Influence of cell growth conditions and medium composition on EGFP photostability in live cells.

Mamontova AV, Bogdanov AM, Lukyanov KA.

Biotechniques. 2015 May 1;58(5):258-61. doi: 10.2144/000114289. eCollection 2015 May.

38.

Phototoxic effects of lysosome-associated genetically encoded photosensitizer KillerRed.

Serebrovskaya EO, Ryumina AP, Boulina ME, Shirmanova MV, Zagaynova EV, Bogdanova EA, Lukyanov SA, Lukyanov KA.

J Biomed Opt. 2014 Jul;19(7):071403. doi: 10.1117/1.JBO.19.7.071403.

PMID:
24365992
39.

Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine.

Pletnev VZ, Pletneva NV, Lukyanov KA, Souslova EA, Fradkov AF, Chudakov DM, Chepurnykh T, Yampolsky IV, Wlodawer A, Dauter Z, Pletnev S.

Acta Crystallogr D Biol Crystallogr. 2013 Sep;69(Pt 9):1850-60. doi: 10.1107/S0907444913015424. Epub 2013 Aug 17.

40.

Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells.

Ryumina AP, Serebrovskaya EO, Shirmanova MV, Snopova LB, Kuznetsova MM, Turchin IV, Ignatova NI, Klementieva NV, Fradkov AF, Shakhov BE, Zagaynova EV, Lukyanov KA, Lukyanov SA.

Biochim Biophys Acta. 2013 Nov;1830(11):5059-67. doi: 10.1016/j.bbagen.2013.07.015. Epub 2013 Jul 20.

PMID:
23876295
41.

Genetically encoded fluorescent redox sensors.

Lukyanov KA, Belousov VV.

Biochim Biophys Acta. 2014 Feb;1840(2):745-56. doi: 10.1016/j.bbagen.2013.05.030. Epub 2013 May 29. Review.

PMID:
23726987
42.

A synthetic approach to GFP chromophore analogs from 3-azidocinnamates. Role of methyl rotors in chromophore photophysics.

Baranov MS, Solntsev KM, Lukyanov KA, Yampolsky IV.

Chem Commun (Camb). 2013 Jun 28;49(51):5778-80. doi: 10.1039/c3cc41948g.

PMID:
23689612
43.

Anti-fading media for live cell GFP imaging.

Bogdanov AM, Kudryavtseva EI, Lukyanov KA.

PLoS One. 2012;7(12):e53004. doi: 10.1371/journal.pone.0053004. Epub 2012 Dec 21.

44.

Tryptophan-based chromophore in fluorescent proteins can be anionic.

Sarkisyan KS, Yampolsky IV, Solntsev KM, Lukyanov SA, Lukyanov KA, Mishin AS.

Sci Rep. 2012;2:608. doi: 10.1038/srep00608. Epub 2012 Aug 29.

45.

Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.

Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV.

J Biophotonics. 2013 Mar;6(3):283-90. doi: 10.1002/jbio.201200056. Epub 2012 Jun 13.

PMID:
22696211
46.

Conformationally locked chromophores as models of excited-state proton transfer in fluorescent proteins.

Baranov MS, Lukyanov KA, Borissova AO, Shamir J, Kosenkov D, Slipchenko LV, Tolbert LM, Yampolsky IV, Solntsev KM.

J Am Chem Soc. 2012 Apr 4;134(13):6025-32. doi: 10.1021/ja3010144. Epub 2012 Mar 20.

PMID:
22404323
47.

Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.

Gurskaya NG, Staroverov DB, Zhang L, Fradkov AF, Markina NM, Pereverzev AP, Lukyanov KA.

Nucleic Acids Res. 2012 Apr;40(8):e57. doi: 10.1093/nar/gkr1314. Epub 2012 Jan 17.

48.

Green-red flashers to accelerate biology.

Lukyanov KA.

Chem Biol. 2011 Oct 28;18(10):1202-4. doi: 10.1016/j.chembiol.2011.10.003.

49.

A synthetic GFP-like chromophore undergoes base-catalyzed autoxidation into acylimine red form.

Ivashkin PE, Lukyanov KA, Lukyanov S, Yampolsky IV.

J Org Chem. 2011 Apr 15;76(8):2782-91. doi: 10.1021/jo200150b. Epub 2011 Mar 22.

PMID:
21391723
50.

Light-induced blockage of cell division with a chromatin-targeted phototoxic fluorescent protein.

Serebrovskaya EO, Gorodnicheva TV, Ermakova GV, Solovieva EA, Sharonov GV, Zagaynova EV, Chudakov DM, Lukyanov S, Zaraisky AG, Lukyanov KA.

Biochem J. 2011 Apr 1;435(1):65-71. doi: 10.1042/BJ20101217.

PMID:
21214518

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