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Items: 24

1.

ascend: R package for analysis of single-cell RNA-seq data.

Senabouth A, Lukowski SW, Hernandez JA, Andersen SB, Mei X, Nguyen QH, Powell JE.

Gigascience. 2019 Aug 1;8(8). pii: giz087. doi: 10.1093/gigascience/giz087.

2.

A single-cell transcriptome atlas of the adult human retina.

Lukowski SW, Lo CY, Sharov AA, Nguyen Q, Fang L, Hung SS, Zhu L, Zhang T, Grünert U, Nguyen T, Senabouth A, Jabbari JS, Welby E, Sowden JC, Waugh HS, Mackey A, Pollock G, Lamb TD, Wang PY, Hewitt AW, Gillies MC, Powell JE, Wong RC.

EMBO J. 2019 Sep 16;38(18):e100811. doi: 10.15252/embj.2018100811. Epub 2019 Aug 22.

PMID:
31436334
3.

Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions.

Devitt K, Hanson SJ, Tuong ZK, McMeniman E, Soyer HP, Frazer IH, Lukowski SW.

Virology. 2019 Aug 13;537:14-19. doi: 10.1016/j.virol.2019.08.007. [Epub ahead of print]

PMID:
31425970
4.

Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells.

Lukowski SW, Patel J, Andersen SB, Sim SL, Wong HY, Tay J, Winkler I, Powell JE, Khosrotehrani K.

Cell Rep. 2019 May 28;27(9):2748-2758.e3. doi: 10.1016/j.celrep.2019.04.102.

5.

Genetic regulation of methylation in human endometrium and blood and gene targets for reproductive diseases.

Mortlock S, Restuadi R, Levien R, Girling JE, Holdsworth-Carson SJ, Healey M, Zhu Z, Qi T, Wu Y, Lukowski SW, Rogers PAW, Yang J, McRae AF, Fung JN, Montgomery GW.

Clin Epigenetics. 2019 Mar 14;11(1):49. doi: 10.1186/s13148-019-0648-7.

6.

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation.

Friedman CE, Nguyen Q, Lukowski SW, Helfer A, Chiu HS, Miklas J, Levy S, Suo S, Han JJ, Osteil P, Peng G, Jing N, Baillie GJ, Senabouth A, Christ AN, Bruxner TJ, Murry CE, Wong ES, Ding J, Wang Y, Hudson J, Ruohola-Baker H, Bar-Joseph Z, Tam PPL, Powell JE, Palpant NJ.

Cell Stem Cell. 2018 Oct 4;23(4):586-598.e8. doi: 10.1016/j.stem.2018.09.009.

7.

Transcriptomics and single-cell RNA-sequencing.

Chambers DC, Carew AM, Lukowski SW, Powell JE.

Respirology. 2019 Jan;24(1):29-36. doi: 10.1111/resp.13412. Epub 2018 Sep 28. Review.

8.

Genetic regulation of disease risk and endometrial gene expression highlights potential target genes for endometriosis and polycystic ovarian syndrome.

Fung JN, Mortlock S, Girling JE, Holdsworth-Carson SJ, Teh WT, Zhu Z, Lukowski SW, McKinnon BD, McRae A, Yang J, Healey M, Powell JE, Rogers PAW, Montgomery GW.

Sci Rep. 2018 Jul 30;8(1):11424. doi: 10.1038/s41598-018-29462-y.

9.

Hepatic expression profiling identifies steatosis-independent and steatosis-driven advanced fibrosis genes.

Ramnath D, Irvine KM, Lukowski SW, Horsfall LU, Loh Z, Clouston AD, Patel PJ, Fagan KJ, Iyer A, Lampe G, Stow JL, Schroder K, Fairlie DP, Powell JE, Powell EE, Sweet MJ.

JCI Insight. 2018 Jul 26;3(14). pii: 120274. doi: 10.1172/jci.insight.120274. eCollection 2018 Jul 26.

10.

Longitudinal expression profiling of CD4+ and CD8+ cells in patients with active to quiescent giant cell arteritis.

De Smit E, Lukowski SW, Anderson L, Senabouth A, Dauyey K, Song S, Wyse B, Wheeler L, Chen CY, Cao K, Wong Ten Yuen A, Shuey N, Clarke L, Lopez Sanchez I, Hung SSC, Pébay A, Mackey DA, Brown MA, Hewitt AW, Powell JE.

BMC Med Genomics. 2018 Jul 23;11(1):61. doi: 10.1186/s12920-018-0376-4.

11.

Detection of HPV E7 Transcription at Single-Cell Resolution in Epidermis.

Lukowski SW, Tuong ZK, Noske K, Senabouth A, Nguyen QH, Andersen SB, Soyer HP, Frazer IH, Powell JE.

J Invest Dermatol. 2018 Dec;138(12):2558-2567. doi: 10.1016/j.jid.2018.06.169. Epub 2018 Jun 30.

PMID:
29964033
12.

Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations.

Nguyen QH, Lukowski SW, Chiu HS, Senabouth A, Bruxner TJC, Christ AN, Palpant NJ, Powell JE.

Genome Res. 2018 Jul;28(7):1053-1066. doi: 10.1101/gr.223925.117. Epub 2018 May 11.

13.

Single cell RNA sequencing of stem cell-derived retinal ganglion cells.

Daniszewski M, Senabouth A, Nguyen QH, Crombie DE, Lukowski SW, Kulkarni T, Sluch VM, Jabbari JS, Chamling X, Zack DJ, Pébay A, Powell JE, Hewitt AW.

Sci Data. 2018 Feb 13;5:180013. doi: 10.1038/sdata.2018.13.

14.

Slightly deleterious genomic variants and transcriptome perturbations in Down syndrome embryonic selection.

Popadin K, Peischl S, Garieri M, Sailani MR, Letourneau A, Santoni F, Lukowski SW, Bazykin GA, Nikolaev S, Meyer D, Excoffier L, Reymond A, Antonarakis SE.

Genome Res. 2018 Jan;28(1):1-10. doi: 10.1101/gr.228411.117. Epub 2017 Dec 13.

15.

Genetic correlations reveal the shared genetic architecture of transcription in human peripheral blood.

Lukowski SW, Lloyd-Jones LR, Holloway A, Kirsten H, Hemani G, Yang J, Small K, Zhao J, Metspalu A, Dermitzakis ET, Gibson G, Spector TD, Thiery J, Scholz M, Montgomery GW, Esko T, Visscher PM, Powell JE.

Nat Commun. 2017 Sep 7;8(1):483. doi: 10.1038/s41467-017-00473-z.

16.

The genetic regulation of transcription in human endometrial tissue.

Fung JN, Girling JE, Lukowski SW, Sapkota Y, Wallace L, Holdsworth-Carson SJ, Henders AK, Healey M, Rogers PAW, Powell JE, Montgomery GW.

Hum Reprod. 2017 Apr 1;32(4):893-904. doi: 10.1093/humrep/dex006.

PMID:
28177073
17.

Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytes.

Lukowski SW, Fish RJ, Martin-Levilain J, Gonelle-Gispert C, Bühler LH, Maechler P, Dermitzakis ET, Neerman-Arbez M.

Data Brief. 2015 Jun 10;4:226-8. doi: 10.1016/j.dib.2015.05.023. eCollection 2015 Sep.

18.

Hypofibrinogenemia and liver disease: a new case of Aguadilla fibrinogen and review of the literature.

Casini A, Sokollik C, Lukowski SW, Lurz E, Rieubland C, de Moerloose P, Neerman-Arbez M.

Haemophilia. 2015 Nov;21(6):820-7. doi: 10.1111/hae.12719. Epub 2015 May 20.

PMID:
25990487
19.

Integrated analysis of mRNA and miRNA expression in response to interleukin-6 in hepatocytes.

Lukowski SW, Fish RJ, Martin-Levilain J, Gonelle-Gispert C, Bühler LH, Maechler P, Dermitzakis ET, Neerman-Arbez M.

Genomics. 2015 Aug;106(2):107-15. doi: 10.1016/j.ygeno.2015.05.001. Epub 2015 May 12.

20.

Ferrets exclusively synthesize Neu5Ac and express naturally humanized influenza A virus receptors.

Ng PS, Böhm R, Hartley-Tassell LE, Steen JA, Wang H, Lukowski SW, Hawthorne PL, Trezise AE, Coloe PJ, Grimmond SM, Haselhorst T, von Itzstein M, Paton AW, Paton JC, Jennings MP.

Nat Commun. 2014 Dec 17;5:5750. doi: 10.1038/ncomms6750.

21.

Gene age predicts the strength of purifying selection acting on gene expression variation in humans.

Popadin KY, Gutierrez-Arcelus M, Lappalainen T, Buil A, Steinberg J, Nikolaev SI, Lukowski SW, Bazykin GA, Seplyarskiy VB, Ioannidis P, Zdobnov EM, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2014 Dec 4;95(6):660-74. doi: 10.1016/j.ajhg.2014.11.003.

22.

CFTR mRNA expression is regulated by an upstream open reading frame and RNA secondary structure in its 5' untranslated region.

Lukowski SW, Rothnagel JA, Trezise AE.

Hum Mol Genet. 2015 Feb 15;24(4):899-912. doi: 10.1093/hmg/ddu501. Epub 2014 Sep 30.

PMID:
25274779
23.

The serum resistome of a globally disseminated multidrug resistant uropathogenic Escherichia coli clone.

Phan MD, Peters KM, Sarkar S, Lukowski SW, Allsopp LP, Gomes Moriel D, Achard ME, Totsika M, Marshall VM, Upton M, Beatson SA, Schembri MA.

PLoS Genet. 2013;9(10):e1003834. doi: 10.1371/journal.pgen.1003834. Epub 2013 Oct 3.

24.

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