Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 210

1.

Data Processing Pipeline for Lipid Profiling of Carotid Atherosclerotic Plaque with Mass Spectrometry Imaging.

Visscher M, Moerman AM, Burgers PC, Van Beusekom HMM, Luider TM, Verhagen HJM, Van der Steen AFW, Van der Heiden K, Van Soest G.

J Am Soc Mass Spectrom. 2019 Jun 27. doi: 10.1007/s13361-019-02254-y. [Epub ahead of print]

PMID:
31250318
2.

The role of ENPP1/PC-1 in osteoinduction by calcium phosphate ceramics.

Othman Z, Fernandes H, Groot AJ, Luider TM, Alcinesio A, Pereira DM, Guttenplan APM, Yuan H, Habibovic P.

Biomaterials. 2019 Jul;210:12-24. doi: 10.1016/j.biomaterials.2019.04.021. Epub 2019 Apr 23.

PMID:
31048198
3.

Novel CSF biomarkers in genetic frontotemporal dementia identified by proteomics.

van der Ende EL, Meeter LH, Stingl C, van Rooij JGJ, Stoop MP, Nijholt DAT, Sanchez-Valle R, Graff C, Öijerstedt L, Grossman M, McMillan C, Pijnenburg YAL, Laforce R Jr, Binetti G, Benussi L, Ghidoni R, Luider TM, Seelaar H, van Swieten JC.

Ann Clin Transl Neurol. 2019 Mar 7;6(4):698-707. doi: 10.1002/acn3.745. eCollection 2019 Apr.

4.

Differential tissue expression of extracellular vesicle-derived proteins in prostate cancer.

Duijvesz D, Rodriguez-Blanco G, Hoogland AM, Verhoef EI, Dekker LJ, Roobol MJ, van Leenders GJLH, Luider TM, Jenster G.

Prostate. 2019 Jun;79(9):1032-1042. doi: 10.1002/pros.23813. Epub 2019 Apr 24.

5.

Identification of 4-Hydroxyproline at the Xaa Position in Collagen by Mass Spectrometry.

van Huizen NA, Burgers PC, Saintmont F, Brocorens P, Gerbaux P, Stingl C, Dekker LJM, IJzermans JNM, Luider TM.

J Proteome Res. 2019 May 3;18(5):2045-2051. doi: 10.1021/acs.jproteome.8b00930. Epub 2019 Apr 12.

PMID:
30945869
6.

Neoantigens in Chronic Obstructive Pulmonary Disease and Lung Cancer: A Point of View.

Zeneyedpour L, Dekker LJM, van Sten-van T Hoff JJM, Burgers PC, Ten Hacken NHT, Luider TM.

Proteomics Clin Appl. 2019 Mar;13(2):e1800093. doi: 10.1002/prca.201800093. Epub 2019 Feb 11. Review.

7.

Tissue proteomics outlines AGR2 AND LOX5 as markers for biochemical recurrence of prostate cancer.

Rodríguez-Blanco G, Zeneyedpour L, Duijvesz D, Hoogland AM, Verhoef EI, Kweldam CF, Burgers PC, Smitt PS, Bangma CH, Jenster G, van Leenders GJLH, Dekker LJM, Luider TM.

Oncotarget. 2018 Nov 23;9(92):36444-36456. doi: 10.18632/oncotarget.26342. eCollection 2018 Nov 23.

8.

Quantification of Calcyclin and Heat Shock Protein 90 in Sera from Women with and without Preeclampsia by Mass Spectrometry.

Güzel C, van den Berg CB, Duvekot JJ, Stingl C, van den Bosch TPP, van der Weiden M, Steegers EAP, Steegers-Theunissen RPM, Luider TM.

Proteomics Clin Appl. 2019 May;13(3):e1800181. doi: 10.1002/prca.201800181. Epub 2018 Nov 26.

9.

Up-regulation of collagen proteins in colorectal liver metastasis compared with normal liver tissue.

van Huizen NA, Coebergh van den Braak RRJ, Doukas M, Dekker LJM, IJzermans JNM, Luider TM.

J Biol Chem. 2019 Jan 4;294(1):281-289. doi: 10.1074/jbc.RA118.005087. Epub 2018 Nov 8.

PMID:
30409905
10.

Comparative proteomic analysis of cat eye syndrome critical region protein 1- function in tumor-associated macrophages and immune response regulation of glial tumors.

Zhu C, Mustafa DAM, Krebber MM, Chrifi I, Leenen PJM, Duncker DJ, Dekker L, Luider TM, Kros JM, Cheng C.

Oncotarget. 2018 Sep 11;9(71):33500-33514. doi: 10.18632/oncotarget.26063. eCollection 2018 Sep 11.

11.

Proteomic alterations in early stage cervical cancer.

Güzel C, Govorukhina NI, Wisman GBA, Stingl C, Dekker LJM, Klip HG, Hollema H, Guryev V, Horvatovich PL, van der Zee AGJ, Bischoff R, Luider TM.

Oncotarget. 2018 Apr 6;9(26):18128-18147. doi: 10.18632/oncotarget.24773. eCollection 2018 Apr 6.

12.

Determination of Site-Specific Phosphorylation Ratios in Proteins with Targeted Mass Spectrometry.

Dekker LJM, Zeneyedpour L, Snoeijers S, Joore J, Leenstra S, Luider TM.

J Proteome Res. 2018 Apr 6;17(4):1654-1663. doi: 10.1021/acs.jproteome.7b00911. Epub 2018 Mar 9.

PMID:
29457462
13.

Development of a Targeted Mass-Spectrometry Serum Assay To Quantify M-Protein in the Presence of Therapeutic Monoclonal Antibodies.

Zajec M, Jacobs JFM, Groenen PJTA, de Kat Angelino CM, Stingl C, Luider TM, De Rijke YB, VanDuijn MM.

J Proteome Res. 2018 Mar 2;17(3):1326-1333. doi: 10.1021/acs.jproteome.7b00890. Epub 2018 Feb 15.

PMID:
29424538
14.

Cleavable Crosslinkers as Tissue Fixation Reagents for Proteomic Analysis.

Ongay S, Langelaar-Makkinje M, Stoop MP, Liu N, Overkleeft H, Luider TM, Groothuis GMM, Bischoff R.

Chembiochem. 2018 Apr 4;19(7):736-743. doi: 10.1002/cbic.201700625. Epub 2018 Feb 16.

PMID:
29356267
15.

T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression.

Mustafa DAM, Pedrosa RMSM, Smid M, van der Weiden M, de Weerd V, Nigg AL, Berrevoets C, Zeneyedpour L, Priego N, Valiente M, Luider TM, Debets R, Martens JWM, Foekens JA, Sieuwerts AM, Kros JM.

Acta Neuropathol. 2018 Apr;135(4):581-599. doi: 10.1007/s00401-018-1806-2. Epub 2018 Jan 19.

16.

De Novo Sequencing of Peptides from High-Resolution Bottom-Up Tandem Mass Spectra using Top-Down Intended Methods.

Vyatkina K, Dekker LJM, Wu S, VanDuijn MM, Liu X, Tolić N, Luider TM, Paša-Tolić L.

Proteomics. 2017 Dec;17(23-24). doi: 10.1002/pmic.201600321.

PMID:
29110399
17.

Immune Repertoire after Immunization As Seen by Next-Generation Sequencing and Proteomics.

VanDuijn MM, Dekker LJ, van IJcken WFJ, Sillevis Smitt PAE, Luider TM.

Front Immunol. 2017 Oct 16;8:1286. doi: 10.3389/fimmu.2017.01286. eCollection 2017.

18.

Comparison of Targeted Mass Spectrometry Techniques with an Immunoassay: A Case Study for HSP90α.

Güzel C, Govorukhina NI, Stingl C, Dekker LJM, Boichenko A, van der Zee AGJ, Bischoff RPH, Luider TM.

Proteomics Clin Appl. 2018 Jan;12(1). doi: 10.1002/prca.201700107. Epub 2017 Oct 30.

PMID:
28975736
19.

High and individually variable enzymatic activity precludes accurate determination of pemetrexed, methotrexate and their polyglutamate metabolite concentrations in plasma.

Stoop MP, Visser S, van Dijk E, Aerts JGJV, Stricker BH, Luider TM.

J Pharm Biomed Anal. 2018 Jan 30;148:89-92. doi: 10.1016/j.jpba.2017.09.014. Epub 2017 Sep 14.

PMID:
28965049
20.

Decreased Neuro-Axonal Proteins in CSF at First Attack of Suspected Multiple Sclerosis.

Stoop MP, Runia TF, Stingl C, van der Vuurst de Vries RM, Luider TM, Hintzen RQ.

Proteomics Clin Appl. 2017 Dec;11(11-12). doi: 10.1002/prca.201700005. Epub 2017 Oct 23.

PMID:
28941200
21.

Decellularization of Whole Human Liver Grafts Using Controlled Perfusion for Transplantable Organ Bioscaffolds.

Verstegen MMA, Willemse J, van den Hoek S, Kremers GJ, Luider TM, van Huizen NA, Willemssen FEJA, Metselaar HJ, IJzermans JNM, van der Laan LJW, de Jonge J.

Stem Cells Dev. 2017 Sep 15;26(18):1304-1315. doi: 10.1089/scd.2017.0095. Epub 2017 Jul 31.

PMID:
28665233
22.

Proteomic characterization of microdissected breast tissue environment provides a protein-level overview of malignant transformation.

Braakman RB, Stingl C, Tilanus-Linthorst MM, van Deurzen CH, Timmermans MA, Smid M, Foekens JA, Luider TM, Martens JW, Umar A.

Proteomics. 2017 Mar;17(5). doi: 10.1002/pmic.201600213.

23.

Elevated levels of protein AMBP in cerebrospinal fluid of women with preeclampsia compared to normotensive pregnant women.

van den Berg CB, Duvekot JJ, Güzel C, Hansson SR, de Leeuw TG, Steegers EA, Versendaal J, Luider TM, Stoop MP.

Proteomics Clin Appl. 2017 Jan;11(1-2). doi: 10.1002/prca.201600082. Epub 2016 Oct 24.

PMID:
27615121
24.

Serum Protein Markers for the Early Detection of Lung Cancer: A Focus on Autoantibodies.

Broodman I, Lindemans J, van Sten J, Bischoff R, Luider T.

J Proteome Res. 2017 Jan 6;16(1):3-13. doi: 10.1021/acs.jproteome.6b00559. Epub 2016 Nov 2. Review.

PMID:
27769114
25.

TP53 mutated glioblastoma stem-like cell cultures are sensitive to dual mTORC1/2 inhibition while resistance in TP53 wild type cultures can be overcome by combined inhibition of mTORC1/2 and Bcl-2.

Venkatesan S, Hoogstraat M, Caljouw E, Pierson T, Spoor JK, Zeneyedpour L, Dubbink HJ, Dekker LJ, van der Kaaij M, Kloezeman J, Berghauser Pont LM, Besselink NJ, Luider TM, Joore J, Martens JW, Lamfers ML, Sleijfer S, Leenstra S.

Oncotarget. 2016 Sep 6;7(36):58435-58444. doi: 10.18632/oncotarget.11205.

26.

Interaction of metal cations with functionalised hydrocarbons in the gas phase: further experimental evidence for solvation of metal ions by the hydrocarbon chain.

van Huizen NA, Luider TM, Jobst KJ, Terlouw JK, Holmes JL, Burgers PC.

Eur J Mass Spectrom (Chichester). 2016;22(2):61-70. doi: 10.1255/ejms.1410.

PMID:
27419899
27.

Evaluation of different pretreatment protocols to detect accurately clinical carbapenemase-producing Enterobacteriaceae by MALDI-TOF.

Monteferrante CG, Sultan S, Ten Kate MT, Dekker LJ, Sparbier K, Peer M, Kostzrewa M, Luider TM, Goessens WH, Burgers PC.

J Antimicrob Chemother. 2016 Oct;71(10):2856-67. doi: 10.1093/jac/dkw208. Epub 2016 Jun 10.

PMID:
27287232
28.

A new quantification method for assessing plasma concentrations of pemetrexed and its polyglutamate metabolites.

Stoop MP, Visser S, van Dijk E, Aerts JGJV, Stricker BH, Luider TM.

J Pharm Biomed Anal. 2016 Sep 5;128:1-8. doi: 10.1016/j.jpba.2016.04.036. Epub 2016 Apr 30.

PMID:
27209449
29.

Top-down analysis of protein samples by de novo sequencing techniques.

Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Luider TM, Paša-Tolić L, Pevzner PA.

Bioinformatics. 2016 Sep 15;32(18):2753-9. doi: 10.1093/bioinformatics/btw307. Epub 2016 May 14.

30.

Hydroxylated collagen peptide in urine as biomarker for detecting colorectal liver metastases.

Lalmahomed ZS, Bröker ME, van Huizen NA, Coebergh van den Braak RR, Dekker LJ, Rizopoulos D, Verhoef C, Steyerberg EW, Luider TM, IJzermans JN.

Am J Cancer Res. 2016 Jan 15;6(2):321-30. eCollection 2016.

31.

Detection of amino acid substitutions in the GyrA protein of fluoroquinolone-resistant typhoidal Salmonella isolates using high-resolution mass spectrometry.

Hassing RJ, Goessens WH, Zeneyedpour L, Sultan S, van Kampen JJ, Verbon A, van Genderen PJ, Hays JP, Luider TM, Dekker LJ.

Int J Antimicrob Agents. 2016 May;47(5):351-6. doi: 10.1016/j.ijantimicag.2016.01.018. Epub 2016 Mar 15.

PMID:
27132191
32.

The advantage of laser-capture microdissection over whole tissue analysis in proteomic profiling studies.

De Marchi T, Braakman RB, Stingl C, van Duijn MM, Smid M, Foekens JA, Luider TM, Martens JW, Umar A.

Proteomics. 2016 May;16(10):1474-85. doi: 10.1002/pmic.201600004. Epub 2016 Apr 28.

PMID:
27030549
33.

Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera.

De Marchi T, Kuhn E, Dekker LJ, Stingl C, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Luider TM, Foekens JA, Martens JW, Carr SA, Umar A.

J Proteome Res. 2016 Apr 1;15(4):1230-42. doi: 10.1021/acs.jproteome.5b01119. Epub 2016 Mar 18.

PMID:
26958999
34.

Global proteomic characterization of microdissected estrogen receptor positive breast tumors.

De Marchi T, Liu NQ, Sting C, Smid M, Tjoa M, Braakman RB, Luider TM, Foekens JA, Martens JW, Umar A.

Data Brief. 2015 Oct 8;5:399-402. doi: 10.1016/j.dib.2015.09.034. eCollection 2015 Dec.

35.

Elevated Expression of the Cerebrospinal Fluid Disease Markers Chromogranin A and Clusterin in Astrocytes of Multiple Sclerosis White Matter Lesions.

van Luijn MM, van Meurs M, Stoop MP, Verbraak E, Wierenga-Wolf AF, Melief MJ, Kreft KL, Verdijk RM, 't Hart BA, Luider TM, Laman JD, Hintzen RQ.

J Neuropathol Exp Neurol. 2016 Jan;75(1):86-98.

PMID:
26683597
36.

Survivin Autoantibodies Are Not Elevated in Lung Cancer When Assayed Controlling for Specificity and Smoking Status.

Broodman I, VanDuijn MM, Stingl C, Dekker LJ, Germenis AE, de Koning HJ, van Klaveren RJ, Aerts JG, Lindemans J, Luider TM.

Cancer Immunol Res. 2016 Feb;4(2):165-72. doi: 10.1158/2326-6066.CIR-14-0176. Epub 2015 Dec 11.

37.

Annexin-A1 and caldesmon are associated with resistance to tamoxifen in estrogen receptor positive recurrent breast cancer.

De Marchi T, Timmermans AM, Smid M, Look MP, Stingl C, Opdam M, Linn SC, Sweep FC, Span PN, Kliffen M, van Deurzen CH, Luider TM, Foekens JA, Martens JW, Umar A.

Oncotarget. 2016 Jan 19;7(3):3098-110. doi: 10.18632/oncotarget.6521.

38.

Gray matter-related proteins are associated with childhood-onset multiple sclerosis.

Singh V, van Pelt ED, Stoop MP, Stingl C, Ketelslegers IA, Neuteboom RF, Catsman-Berrevoets CE, Luider TM, Hintzen RQ.

Neurol Neuroimmunol Neuroinflamm. 2015 Sep 24;2(5):e155. doi: 10.1212/NXI.0000000000000155. eCollection 2015 Oct.

39.

De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.

Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Dvorkin M, Alexandrova S, Luider TM, Paša-Tolić L, Pevzner PA.

J Proteome Res. 2015 Nov 6;14(11):4450-62. doi: 10.1021/pr501244v. Epub 2015 Oct 13.

PMID:
26412692
40.

Interaction of metal cations with alkylnitriles in the gas phase: solvation of metal ions by the hydrocarbon chain.

Jobst KJ, Terlouw JK, Luider T, van Huizen NA, Burgers PC.

Eur J Mass Spectrom (Chichester). 2015;21(3):579-87. doi: 10.1255/ejms.1323.

PMID:
26307737
41.

4-protein signature predicting tamoxifen treatment outcome in recurrent breast cancer.

De Marchi T, Liu NQ, Stingl C, Timmermans MA, Smid M, Look MP, Tjoa M, Braakman RB, Opdam M, Linn SC, Sweep FC, Span PN, Kliffen M, Luider TM, Foekens JA, Martens JW, Umar A.

Mol Oncol. 2016 Jan;10(1):24-39. doi: 10.1016/j.molonc.2015.07.004. Epub 2015 Aug 7.

42.

Quantitative measurement of immunoglobulins and free light chains using mass spectrometry.

VanDuijn MM, Jacobs JF, Wevers RA, Engelke UF, Joosten I, Luider TM.

Anal Chem. 2015 Aug 18;87(16):8268-74. doi: 10.1021/acs.analchem.5b01263. Epub 2015 Jul 28.

PMID:
26168337
43.

Glioblastoma-derived extracellular vesicles modify the phenotype of monocytic cells.

de Vrij J, Maas SL, Kwappenberg KM, Schnoor R, Kleijn A, Dekker L, Luider TM, de Witte LD, Litjens M, van Strien ME, Hol EM, Kroonen J, Robe PA, Lamfers ML, Schilham MW, Broekman ML.

Int J Cancer. 2015 Oct 1;137(7):1630-42. doi: 10.1002/ijc.29521. Epub 2015 Apr 7.

44.

Proteomics urine analysis of pregnant women suffering from multiple sclerosis.

Singh V, Stingl C, Stoop MP, Zeneyedpour L, Neuteboom RF, Smitt PS, Hintzen RQ, Luider TM.

J Proteome Res. 2015 May 1;14(5):2065-73. doi: 10.1021/pr501162w. Epub 2015 Mar 30.

PMID:
25793971
45.

Pregnancy Zone Protein is Increased in the Alzheimer's Disease Brain and Associates with Senile Plaques.

Nijholt DA, Ijsselstijn L, van der Weiden MM, Zheng PP, Sillevis Smitt PA, Koudstaal PJ, Luider TM, Kros JM.

J Alzheimers Dis. 2015;46(1):227-38. doi: 10.3233/JAD-131628.

PMID:
25737043
46.

Integrative analysis of genomics and proteomics data on clinical breast cancer tissue specimens extracted with acid guanidinium thiocyanate-phenol-chloroform.

Braakman RB, Bezstarosti K, Sieuwerts AM, de Weerd V, van Galen AM, Stingl C, Luider TM, Timmermans MA, Smid M, Martens JW, Foekens JA, Demmers JA, Umar A.

J Proteome Res. 2015 Mar 6;14(3):1627-36. doi: 10.1021/acs.jproteome.5b00046. Epub 2015 Feb 2.

PMID:
25611981
47.

Laser capture microdissection of fluorescently labeled amyloid plaques from Alzheimer's disease brain tissue for mass spectrometric analysis.

Nijholt DA, Stingl C, Luider TM.

Methods Mol Biol. 2015;1243:165-73. doi: 10.1007/978-1-4939-1872-0_9.

PMID:
25384745
48.

Dimerization of peptides by calcium ions: investigation of a calcium-binding motif.

Jamalian A, Sneekes EJ, Dekker LJ, Ursem M, Luider TM, Burgers PC.

Int J Proteomics. 2014;2014:153712. doi: 10.1155/2014/153712. Epub 2014 Sep 14.

49.

Circulating glioma biomarkers.

Kros JM, Mustafa DM, Dekker LJ, Sillevis Smitt PA, Luider TM, Zheng PP.

Neuro Oncol. 2015 Mar;17(3):343-60. doi: 10.1093/neuonc/nou207. Epub 2014 Sep 24. Review.

50.

A panel of regulated proteins in serum from patients with cervical intraepithelial neoplasia and cervical cancer.

Boichenko AP, Govorukhina N, Klip HG, van der Zee AG, Güzel C, Luider TM, Bischoff R.

J Proteome Res. 2014 Nov 7;13(11):4995-5007. doi: 10.1021/pr500601w. Epub 2014 Sep 29.

PMID:
25232869

Supplemental Content

Loading ...
Support Center