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Items: 1 to 50 of 66

1.

Health benefits conferred by the human gut microbiota during infancy.

Ventura M, Milani C, Lugli GA, van Sinderen D.

Microb Biotechnol. 2018 Nov 8. doi: 10.1111/1751-7915.13334. [Epub ahead of print]

2.

Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations.

Lavelle K, Martinez I, Neve H, Lugli GA, Franz CMAP, Ventura M, Bello FD, Sinderen DV, Mahony J.

Viruses. 2018 Oct 22;10(10). pii: E577. doi: 10.3390/v10100577.

3.

Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria.

Hayes S, Vincentelli R, Mahony J, Nauta A, Ramond L, Lugli GA, Ventura M, van Sinderen D, Cambillau C.

Mol Microbiol. 2018 Dec;110(5):777-795. doi: 10.1111/mmi.14124. Epub 2018 Oct 30.

PMID:
30204278
4.

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.

Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.

Sci Rep. 2018 Aug 24;8(1):12772. doi: 10.1038/s41598-018-31181-3.

5.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

6.

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N.

Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005.

7.

Reconstruction of the bifidobacterial pan-secretome reveals the network of extracellular interactions between bifidobacteria and the infant gut.

Lugli GA, Mancino W, Milani C, Duranti S, Turroni F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jun 8. pii: AEM.00796-18. doi: 10.1128/AEM.00796-18. [Epub ahead of print]

PMID:
29884754
8.

Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.

Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00706-18. doi: 10.1128/AEM.00706-18. Print 2018 Jul 15.

9.

Understanding the gut-kidney axis in nephrolithiasis: an analysis of the gut microbiota composition and functionality of stone formers.

Ticinesi A, Milani C, Guerra A, Allegri F, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Dodi R, Dall'Asta M, Del Rio D, Ventura M, Meschi T.

Gut. 2018 Dec;67(12):2097-2106. doi: 10.1136/gutjnl-2017-315734. Epub 2018 Apr 28.

PMID:
29705728
10.

A decade of Streptococcus thermophilus phage evolution in an Irish dairy plant.

Lavelle K, Murphy J, Fitzgerald B, Lugli GA, Zomer A, Neve H, Ventura M, Franz CM, Cambillau C, van Sinderen D, Mahony J.

Appl Environ Microbiol. 2018 Mar 9. pii: AEM.02855-17. doi: 10.1128/AEM.02855-17. [Epub ahead of print]

11.

Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin?

Mahony J, Lugli GA, van Sinderen D, Ventura M.

Appl Microbiol Biotechnol. 2018 Mar;102(5):2091-2099. doi: 10.1007/s00253-018-8795-x. Epub 2018 Feb 2. Review.

PMID:
29396587
12.

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.

PMID:
29395537
13.

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

Bottacini F, Zomer A, Milani C, Ferrario C, Lugli GA, Egan M, Ventura M, van Sinderen D.

BMC Genomics. 2017 Dec 28;18(1):991. doi: 10.1186/s12864-017-4387-x.

14.

Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02249-17. doi: 10.1128/AEM.02249-17. Print 2018 Feb 15.

15.

Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis.

Mancabelli L, Milani C, Lugli GA, Turroni F, Cocconi D, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix153.

PMID:
29126267
16.

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, Belzer C, Delgado Palacio S, Arboleya Montes S, Mancabelli L, Lugli GA, Rodriguez JM, Bode L, de Vos W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Microbiol Mol Biol Rev. 2017 Nov 8;81(4). pii: e00036-17. doi: 10.1128/MMBR.00036-17. Print 2017 Dec. Review.

17.

Bifidobacteria and the infant gut: an example of co-evolution and natural selection.

Turroni F, Milani C, Duranti S, Ferrario C, Lugli GA, Mancabelli L, van Sinderen D, Ventura M.

Cell Mol Life Sci. 2018 Jan;75(1):103-118. doi: 10.1007/s00018-017-2672-0. Epub 2017 Oct 5. Review.

PMID:
28983638
18.

Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses.

Ferrario C, Alessandri G, Mancabelli L, Gering E, Mangifesta M, Milani C, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, Hiyashi R, Mackie R, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Nov;19(11):4771-4783. doi: 10.1111/1462-2920.13943. Epub 2017 Oct 13.

PMID:
28967204
19.

Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus.

McDonnell B, Mahony J, Hanemaaijer L, Neve H, Noben JP, Lugli GA, Ventura M, Kouwen TR, van Sinderen D.

Front Microbiol. 2017 Sep 12;8:1754. doi: 10.3389/fmicb.2017.01754. eCollection 2017.

20.

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers.

Ferrario C, Statello R, Carnevali L, Mancabelli L, Milani C, Mangifesta M, Duranti S, Lugli GA, Jimenez B, Lodge S, Viappiani A, Alessandri G, Dall'Asta M, Del Rio D, Sgoifo A, van Sinderen D, Ventura M, Turroni F.

Front Microbiol. 2017 Sep 12;8:1749. doi: 10.3389/fmicb.2017.01749. eCollection 2017.

21.

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients.

Ticinesi A, Milani C, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Ventura M, Meschi T.

Sci Rep. 2017 Sep 11;7(1):11102. doi: 10.1038/s41598-017-10734-y.

22.

Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).

Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3987-3995. doi: 10.1099/ijsem.0.002243. Epub 2017 Sep 12.

PMID:
28893355
23.

Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses.

Mancabelli L, Milani C, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ticinesi A, Nouvenne A, Meschi T, van Sinderen D, Ventura M.

Sci Rep. 2017 Aug 29;7(1):9879. doi: 10.1038/s41598-017-10663-w.

24.

Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, James K, Duranti S, Turroni F, Ferrario C, Ossiprandi MC, van Sinderen D, Ventura M.

ISME J. 2017 Dec;11(12):2834-2847. doi: 10.1038/ismej.2017.138. Epub 2017 Aug 22.

25.

Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.

Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiří K, van Sinderen D, Ventura M.

BMC Genomics. 2017 Aug 1;18(1):568. doi: 10.1186/s12864-017-3955-4.

26.

The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, Mancino W, Viappiani A, Faccini A, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01295-17. doi: 10.1128/AEM.01295-17. Print 2017 Oct 1.

27.

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission.

Duranti S, Lugli GA, Mancabelli L, Armanini F, Turroni F, James K, Ferretti P, Gorfer V, Ferrario C, Milani C, Mangifesta M, Anzalone R, Zolfo M, Viappiani A, Pasolli E, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Fedi S, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Soffiati M, Tateo S, Pedrotti A, Segata N, van Sinderen D, Ventura M.

Microbiome. 2017 Jun 26;5(1):66. doi: 10.1186/s40168-017-0282-6.

28.

Genome Sequence of Serratia marcescens Phage BF.

Casey E, Fitzgerald B, Mahony J, Lugli GA, Ventura M, van Sinderen D.

Genome Announc. 2017 Jun 8;5(23). pii: e00211-17. doi: 10.1128/genomeA.00211-17.

29.

Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens.

Ferrario C, Lugli GA, Ossiprandi MC, Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Alessandri G, van Sinderen D, Ventura M.

Int J Food Microbiol. 2017 Sep 1;256:20-29. doi: 10.1016/j.ijfoodmicro.2017.05.001. Epub 2017 May 3.

PMID:
28578266
30.

Phage Biodiversity in Artisanal Cheese Wheys Reflects the Complexity of the Fermentation Process.

Mahony J, Moscarelli A, Kelleher P, Lugli GA, Ventura M, Settanni L, van Sinderen D.

Viruses. 2017 Mar 16;9(3). pii: E45. doi: 10.3390/v9030045.

31.

Complete Genome Sequence of Bifidobacterium longum W11 (LMG P-21586), Used as a Probiotic Strain.

Inturri R, Ventura M, Ruas-Madiedo P, Lugli GA, Blandino G.

Genome Announc. 2017 Mar 9;5(10). pii: e01659-16. doi: 10.1128/genomeA.01659-16.

32.

Erratum to: Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Feb 17;5(1):23. doi: 10.1186/s40168-017-0243-0. No abstract available.

33.

Biocidal Inactivation of Lactococcus lactis Bacteriophages: Efficacy and Targets of Commonly Used Sanitizers.

Hayes S, Murphy J, Mahony J, Lugli GA, Ventura M, Noben JP, Franz CM, Neve H, Nauta A, Van Sinderen D.

Front Microbiol. 2017 Feb 2;8:107. doi: 10.3389/fmicb.2017.00107. eCollection 2017.

34.

Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations.

Mancabelli L, Milani C, Lugli GA, Turroni F, Ferrario C, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Apr;19(4):1379-1390. doi: 10.1111/1462-2920.13692. Epub 2017 Feb 28. Review.

PMID:
28198087
35.

Genetic and functional characterisation of the lactococcal P335 phage-host interactions.

Mahony J, Oliveira J, Collins B, Hanemaaijer L, Lugli GA, Neve H, Ventura M, Kouwen TR, Cambillau C, van Sinderen D.

BMC Genomics. 2017 Feb 10;18(1):146. doi: 10.1186/s12864-017-3537-5.

36.

Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Jan 17;5(1):5. doi: 10.1186/s40168-016-0221-y. Erratum in: Microbiome. 2017 Feb 17;5(1):23.

37.

Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.

Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02894-16. doi: 10.1128/AEM.02894-16. Print 2017 Feb 1.

38.

Genome Sequences of Eight Prophages Isolated from Lactococcus lactis Dairy Strains.

Oliveira J, Mahony J, Lugli GA, Hanemaaijer L, Kouwen T, Ventura M, van Sinderen D.

Genome Announc. 2016 Nov 10;4(6). pii: e00906-16. doi: 10.1128/genomeA.00906-16.

39.

Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers.

Duranti S, Gaiani F, Mancabelli L, Milani C, Grandi A, Bolchi A, Santoni A, Lugli GA, Ferrario C, Mangifesta M, Viappiani A, Bertoni S, Vivo V, Serafini F, Barbaro MR, Fugazza A, Barbara G, Gioiosa L, Palanza P, Cantoni AM, de'Angelis GL, Barocelli E, de'Angelis N, van Sinderen D, Ventura M, Turroni F.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw191. doi: 10.1093/femsec/fiw191. Epub 2016 Sep 7.

PMID:
27604252
40.

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study.

Milani C, Ticinesi A, Gerritsen J, Nouvenne A, Lugli GA, Mancabelli L, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Lauretani F, De Vos W, van Sinderen D, Meschi T, Ventura M.

Sci Rep. 2016 May 11;6:25945. doi: 10.1038/srep25945.

41.

Cloning, expression and characterization of a β-D-xylosidase from Lactobacillus rossiae DSM 15814(T).

Pontonio E, Mahony J, Di Cagno R, O'Connell Motherway M, Lugli GA, O'Callaghan A, De Angelis M, Ventura M, Gobbetti M, van Sinderen D.

Microb Cell Fact. 2016 May 3;15:72. doi: 10.1186/s12934-016-0473-z.

42.

Insights into the biodiversity of the gut microbiota of broiler chickens.

Mancabelli L, Ferrario C, Milani C, Mangifesta M, Turroni F, Duranti S, Lugli GA, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Dec;18(12):4727-4738. doi: 10.1111/1462-2920.13363. Epub 2016 Jun 27.

PMID:
27129897
43.

Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis.

Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sánchez B, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2016 Apr 1;6:23971. doi: 10.1038/srep23971.

44.

Modulation of the eps-ome transcription of bifidobacteria through simulation of human intestinal environment.

Ferrario C, Milani C, Mancabelli L, Lugli GA, Duranti S, Mangifesta M, Viappiani A, Turroni F, Margolles A, Ruas-Madiedo P, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw056. doi: 10.1093/femsec/fiw056. Epub 2016 Mar 8.

PMID:
26960391
45.

MEGAnnotator: a user-friendly pipeline for microbial genomes assembly and annotation.

Lugli GA, Milani C, Mancabelli L, van Sinderen D, Ventura M.

FEMS Microbiol Lett. 2016 Apr;363(7). pii: fnw049. doi: 10.1093/femsle/fnw049. Epub 2016 Mar 1.

PMID:
26936607
46.

Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach.

Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Viappiani A, Lugli GA, Ferrario C, Gioiosa L, Ferrarini A, Li J, Palanza P, Delledonne M, van Sinderen D, Ventura M.

ISME J. 2016 Jul;10(7):1656-68. doi: 10.1038/ismej.2015.236. Epub 2016 Feb 9.

47.

Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.

Ferrario C, Duranti S, Milani C, Mancabelli L, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Front Microbiol. 2015 Nov 24;6:1331. doi: 10.3389/fmicb.2015.01331. eCollection 2015.

48.

Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota.

Lugli GA, Milani C, Turroni F, Tremblay D, Ferrario C, Mancabelli L, Duranti S, Ward DV, Ossiprandi MC, Moineau S, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Jul;18(7):2196-213. doi: 10.1111/1462-2920.13154. Epub 2016 Jan 18.

PMID:
26627180
49.

Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment.

Milani C, Turroni F, Duranti S, Lugli GA, Mancabelli L, Ferrario C, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2015 Nov 20;82(4):980-991. doi: 10.1128/AEM.03500-15. Print 2016 Feb 15. Review.

50.

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.

Milani C, Lugli GA, Duranti S, Turroni F, Mancabelli L, Ferrario C, Mangifesta M, Hevia A, Viappiani A, Scholz M, Arioli S, Sanchez B, Lane J, Ward DV, Hickey R, Mora D, Segata N, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2015 Oct 28;5:15782. doi: 10.1038/srep15782.

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