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Items: 1 to 50 of 76

1.

Bifidobacterium bifidum and the infant gut microbiota: an intriguing case of microbe-host co-evolution.

Duranti S, Lugli GA, Milani C, James K, Mancabelli L, Turroni F, Alessandri G, Mangifesta M, Mancino W, Ossiprandi MC, Iori A, Rota C, Gargano G, Bernasconi S, Di Pierro F, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Jun 6. doi: 10.1111/1462-2920.14705. [Epub ahead of print]

PMID:
31172651
2.

Isolation of novel gut bifidobacteria using a combination of metagenomic and cultivation approaches.

Lugli GA, Milani C, Duranti S, Alessandri G, Turroni F, Mancabelli L, Tatoni D, Ossiprandi MC, van Sinderen D, Ventura M.

Genome Biol. 2019 May 16;20(1):96. doi: 10.1186/s13059-019-1711-6.

3.

Isolation and Characterization of Lactobacillus brevis Phages.

Feyereisen M, Mahony J, Lugli GA, Ventura M, Neve H, Franz CMAP, Noben JP, O'Sullivan T, Sinderen DV.

Viruses. 2019 Apr 26;11(5). pii: E393. doi: 10.3390/v11050393.

4.

The Lactococcus lactis Pan-Plasmidome.

Kelleher P, Mahony J, Bottacini F, Lugli GA, Ventura M, van Sinderen D.

Front Microbiol. 2019 Apr 4;10:707. doi: 10.3389/fmicb.2019.00707. eCollection 2019.

5.

Colonization of the human gut by bovine bacteria present in Parmesan cheese.

Milani C, Duranti S, Napoli S, Alessandri G, Mancabelli L, Anzalone R, Longhi G, Viappiani A, Mangifesta M, Lugli GA, Bernasconi S, Ossiprandi MC, van Sinderen D, Ventura M, Turroni F.

Nat Commun. 2019 Mar 20;10(1):1286. doi: 10.1038/s41467-019-09303-w.

6.

Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.

Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Int J Syst Evol Microbiol. 2019 May;69(5):1288-1298. doi: 10.1099/ijsem.0.003306. Epub 2019 Feb 21.

PMID:
30789326
7.

Unveiling Genomic Diversity among Members of the Species Bifidobacterium pseudolongum, a Widely Distributed Gut Commensal of the Animal Kingdom.

Lugli GA, Duranti S, Albert K, Mancabelli L, Napoli S, Viappiani A, Anzalone R, Longhi G, Milani C, Turroni F, Alessandri G, Sela DA, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2019 Apr 4;85(8). pii: e03065-18. doi: 10.1128/AEM.03065-18. Print 2019 Apr 15.

PMID:
30737347
8.

Compositional assessment of bacterial communities in probiotic supplements by means of metagenomic techniques.

Lugli GA, Mangifesta M, Mancabelli L, Milani C, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Int J Food Microbiol. 2019 Apr 2;294:1-9. doi: 10.1016/j.ijfoodmicro.2019.01.011. Epub 2019 Jan 21.

PMID:
30711887
9.

Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Lugli GA, Mancino W, Milani C, Duranti S, Mancabelli L, Napoli S, Mangifesta M, Viappiani A, Anzalone R, Longhi G, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e02806-18. doi: 10.1128/AEM.02806-18. Print 2019 Apr 1.

PMID:
30709821
10.

Metagenomic dissection of the canine gut microbiota: insights into taxonomic, metabolic and nutritional features.

Alessandri G, Milani C, Mancabelli L, Mangifesta M, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2019 Apr;21(4):1331-1343. doi: 10.1111/1462-2920.14540. Epub 2019 Mar 18.

PMID:
30680877
11.

Health benefits conferred by the human gut microbiota during infancy.

Ventura M, Milani C, Lugli GA, van Sinderen D.

Microb Biotechnol. 2019 Mar;12(2):243-248. doi: 10.1111/1751-7915.13334. Epub 2018 Nov 8.

12.

Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations.

Lavelle K, Martinez I, Neve H, Lugli GA, Franz CMAP, Ventura M, Bello FD, Sinderen DV, Mahony J.

Viruses. 2018 Oct 22;10(10). pii: E577. doi: 10.3390/v10100577.

13.

Functional carbohydrate binding modules identified in evolved dits from siphophages infecting various Gram-positive bacteria.

Hayes S, Vincentelli R, Mahony J, Nauta A, Ramond L, Lugli GA, Ventura M, van Sinderen D, Cambillau C.

Mol Microbiol. 2018 Dec;110(5):777-795. doi: 10.1111/mmi.14124. Epub 2018 Oct 30.

PMID:
30204278
14.

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts.

Mavrich TN, Casey E, Oliveira J, Bottacini F, James K, Franz CMAP, Lugli GA, Neve H, Ventura M, Hatfull GF, Mahony J, van Sinderen D.

Sci Rep. 2018 Aug 24;8(1):12772. doi: 10.1038/s41598-018-31181-3.

15.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

16.

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N.

Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005.

17.

Reconstruction of the Bifidobacterial Pan-Secretome Reveals the Network of Extracellular Interactions between Bifidobacteria and the Infant Gut.

Lugli GA, Mancino W, Milani C, Duranti S, Turroni F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Aug 1;84(16). pii: e00796-18. doi: 10.1128/AEM.00796-18. Print 2018 Aug 15.

18.

Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.

Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00706-18. doi: 10.1128/AEM.00706-18. Print 2018 Jul 15.

19.

Understanding the gut-kidney axis in nephrolithiasis: an analysis of the gut microbiota composition and functionality of stone formers.

Ticinesi A, Milani C, Guerra A, Allegri F, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Dodi R, Dall'Asta M, Del Rio D, Ventura M, Meschi T.

Gut. 2018 Dec;67(12):2097-2106. doi: 10.1136/gutjnl-2017-315734. Epub 2018 Apr 28.

PMID:
29705728
20.

A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant.

Lavelle K, Murphy J, Fitzgerald B, Lugli GA, Zomer A, Neve H, Ventura M, Franz CM, Cambillau C, van Sinderen D, Mahony J.

Appl Environ Microbiol. 2018 May 1;84(10). pii: e02855-17. doi: 10.1128/AEM.02855-17. Print 2018 May 15.

21.

Impact of gut-associated bifidobacteria and their phages on health: two sides of the same coin?

Mahony J, Lugli GA, van Sinderen D, Ventura M.

Appl Microbiol Biotechnol. 2018 Mar;102(5):2091-2099. doi: 10.1007/s00253-018-8795-x. Epub 2018 Feb 2. Review.

PMID:
29396587
22.

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.

PMID:
29395537
23.

Global transcriptional landscape and promoter mapping of the gut commensal Bifidobacterium breve UCC2003.

Bottacini F, Zomer A, Milani C, Ferrario C, Lugli GA, Egan M, Ventura M, van Sinderen D.

BMC Genomics. 2017 Dec 28;18(1):991. doi: 10.1186/s12864-017-4387-x.

24.

Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02249-17. doi: 10.1128/AEM.02249-17. Print 2018 Feb 15.

25.

Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis.

Mancabelli L, Milani C, Lugli GA, Turroni F, Cocconi D, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix153.

PMID:
29126267
26.

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, Belzer C, Delgado Palacio S, Arboleya Montes S, Mancabelli L, Lugli GA, Rodriguez JM, Bode L, de Vos W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Microbiol Mol Biol Rev. 2017 Nov 8;81(4). pii: e00036-17. doi: 10.1128/MMBR.00036-17. Print 2017 Dec. Review.

27.

Bifidobacteria and the infant gut: an example of co-evolution and natural selection.

Turroni F, Milani C, Duranti S, Ferrario C, Lugli GA, Mancabelli L, van Sinderen D, Ventura M.

Cell Mol Life Sci. 2018 Jan;75(1):103-118. doi: 10.1007/s00018-017-2672-0. Epub 2017 Oct 5. Review.

PMID:
28983638
28.

Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses.

Ferrario C, Alessandri G, Mancabelli L, Gering E, Mangifesta M, Milani C, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, Hiyashi R, Mackie R, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Nov;19(11):4771-4783. doi: 10.1111/1462-2920.13943. Epub 2017 Oct 13.

PMID:
28967204
29.

Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus.

McDonnell B, Mahony J, Hanemaaijer L, Neve H, Noben JP, Lugli GA, Ventura M, Kouwen TR, van Sinderen D.

Front Microbiol. 2017 Sep 12;8:1754. doi: 10.3389/fmicb.2017.01754. eCollection 2017.

30.

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers.

Ferrario C, Statello R, Carnevali L, Mancabelli L, Milani C, Mangifesta M, Duranti S, Lugli GA, Jimenez B, Lodge S, Viappiani A, Alessandri G, Dall'Asta M, Del Rio D, Sgoifo A, van Sinderen D, Ventura M, Turroni F.

Front Microbiol. 2017 Sep 12;8:1749. doi: 10.3389/fmicb.2017.01749. eCollection 2017.

31.

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients.

Ticinesi A, Milani C, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Ventura M, Meschi T.

Sci Rep. 2017 Sep 11;7(1):11102. doi: 10.1038/s41598-017-10734-y.

32.

Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).

Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3987-3995. doi: 10.1099/ijsem.0.002243. Epub 2017 Sep 12.

PMID:
28893355
33.

Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses.

Mancabelli L, Milani C, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ticinesi A, Nouvenne A, Meschi T, van Sinderen D, Ventura M.

Sci Rep. 2017 Aug 29;7(1):9879. doi: 10.1038/s41598-017-10663-w.

34.

Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, James K, Duranti S, Turroni F, Ferrario C, Ossiprandi MC, van Sinderen D, Ventura M.

ISME J. 2017 Dec;11(12):2834-2847. doi: 10.1038/ismej.2017.138. Epub 2017 Aug 22.

35.

Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.

Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiří K, van Sinderen D, Ventura M.

BMC Genomics. 2017 Aug 1;18(1):568. doi: 10.1186/s12864-017-3955-4.

36.

The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, Mancino W, Viappiani A, Faccini A, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01295-17. doi: 10.1128/AEM.01295-17. Print 2017 Oct 1.

37.

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission.

Duranti S, Lugli GA, Mancabelli L, Armanini F, Turroni F, James K, Ferretti P, Gorfer V, Ferrario C, Milani C, Mangifesta M, Anzalone R, Zolfo M, Viappiani A, Pasolli E, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Fedi S, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Soffiati M, Tateo S, Pedrotti A, Segata N, van Sinderen D, Ventura M.

Microbiome. 2017 Jun 26;5(1):66. doi: 10.1186/s40168-017-0282-6.

38.

Genome Sequence of Serratia marcescens Phage BF.

Casey E, Fitzgerald B, Mahony J, Lugli GA, Ventura M, van Sinderen D.

Genome Announc. 2017 Jun 8;5(23). pii: e00211-17. doi: 10.1128/genomeA.00211-17.

39.

Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens.

Ferrario C, Lugli GA, Ossiprandi MC, Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Alessandri G, van Sinderen D, Ventura M.

Int J Food Microbiol. 2017 Sep 1;256:20-29. doi: 10.1016/j.ijfoodmicro.2017.05.001. Epub 2017 May 3.

PMID:
28578266
40.

Phage Biodiversity in Artisanal Cheese Wheys Reflects the Complexity of the Fermentation Process.

Mahony J, Moscarelli A, Kelleher P, Lugli GA, Ventura M, Settanni L, van Sinderen D.

Viruses. 2017 Mar 16;9(3). pii: E45. doi: 10.3390/v9030045.

41.

Complete Genome Sequence of Bifidobacterium longum W11 (LMG P-21586), Used as a Probiotic Strain.

Inturri R, Ventura M, Ruas-Madiedo P, Lugli GA, Blandino G.

Genome Announc. 2017 Mar 9;5(10). pii: e01659-16. doi: 10.1128/genomeA.01659-16.

42.

Erratum to: Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Feb 17;5(1):23. doi: 10.1186/s40168-017-0243-0. No abstract available.

43.

Biocidal Inactivation of Lactococcus lactis Bacteriophages: Efficacy and Targets of Commonly Used Sanitizers.

Hayes S, Murphy J, Mahony J, Lugli GA, Ventura M, Noben JP, Franz CM, Neve H, Nauta A, Van Sinderen D.

Front Microbiol. 2017 Feb 2;8:107. doi: 10.3389/fmicb.2017.00107. eCollection 2017.

44.

Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations.

Mancabelli L, Milani C, Lugli GA, Turroni F, Ferrario C, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Apr;19(4):1379-1390. doi: 10.1111/1462-2920.13692. Epub 2017 Feb 28. Review.

PMID:
28198087
45.

Genetic and functional characterisation of the lactococcal P335 phage-host interactions.

Mahony J, Oliveira J, Collins B, Hanemaaijer L, Lugli GA, Neve H, Ventura M, Kouwen TR, Cambillau C, van Sinderen D.

BMC Genomics. 2017 Feb 10;18(1):146. doi: 10.1186/s12864-017-3537-5.

46.

Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Jan 17;5(1):5. doi: 10.1186/s40168-016-0221-y. Erratum in: Microbiome. 2017 Feb 17;5(1):23.

47.

Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.

Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02894-16. doi: 10.1128/AEM.02894-16. Print 2017 Feb 1.

48.

Genome Sequences of Eight Prophages Isolated from Lactococcus lactis Dairy Strains.

Oliveira J, Mahony J, Lugli GA, Hanemaaijer L, Kouwen T, Ventura M, van Sinderen D.

Genome Announc. 2016 Nov 10;4(6). pii: e00906-16. doi: 10.1128/genomeA.00906-16.

49.

Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers.

Duranti S, Gaiani F, Mancabelli L, Milani C, Grandi A, Bolchi A, Santoni A, Lugli GA, Ferrario C, Mangifesta M, Viappiani A, Bertoni S, Vivo V, Serafini F, Barbaro MR, Fugazza A, Barbara G, Gioiosa L, Palanza P, Cantoni AM, de'Angelis GL, Barocelli E, de'Angelis N, van Sinderen D, Ventura M, Turroni F.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw191. doi: 10.1093/femsec/fiw191. Epub 2016 Sep 7.

PMID:
27604252
50.

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study.

Milani C, Ticinesi A, Gerritsen J, Nouvenne A, Lugli GA, Mancabelli L, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Lauretani F, De Vos W, van Sinderen D, Meschi T, Ventura M.

Sci Rep. 2016 May 11;6:25945. doi: 10.1038/srep25945.

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