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Items: 1 to 50 of 149

1.

Navigating the structure of COMPASS.

Luger K, Markert JW.

Elife. 2020 Feb 24;9. pii: e54767. doi: 10.7554/eLife.54767.

2.
3.

Nonspecific Binding of RNA to PARP1 and PARP2 Does Not Lead to Catalytic Activation.

Nakamoto MY, Rudolph J, Wuttke DS, Luger K.

Biochemistry. 2019 Dec 24;58(51):5107-5111. doi: 10.1021/acs.biochem.9b00986. Epub 2019 Dec 16.

PMID:
31829559
4.

FACT caught in the act of manipulating the nucleosome.

Liu Y, Zhou K, Zhang N, Wei H, Tan YZ, Zhang Z, Carragher B, Potter CS, D'Arcy S, Luger K.

Nature. 2020 Jan;577(7790):426-431. doi: 10.1038/s41586-019-1820-0. Epub 2019 Nov 27.

PMID:
31775157
5.

EvoChromo: towards a synthesis of chromatin biology and evolution.

Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, Levine MT, Luger K, Malik HS, Martín-Durán JM, Peichel CL, Renfree MB, Rutowicz K, Sarkies P, Schmitz RJ, Technau U, Thornton JW, Warnecke T, Wolfe KH.

Development. 2019 Sep 26;146(19). pii: dev178962. doi: 10.1242/dev.178962.

6.

Kinetics of DNA-protein association and dissociation by stopped-flow spectroscopy.

Rudolph J, Luger K.

Methods Enzymol. 2019;625:135-156. doi: 10.1016/bs.mie.2019.04.025. Epub 2019 May 17.

PMID:
31455524
7.

Quantitating repair protein accumulation at DNA lesions: Past, present, and future.

Mahadevan J, Bowerman S, Luger K.

DNA Repair (Amst). 2019 Sep;81:102650. doi: 10.1016/j.dnarep.2019.102650. Epub 2019 Jul 8. Review.

PMID:
31315816
8.

Q-FADD: A Mechanistic Approach for Modeling the Accumulation of Proteins at Sites of DNA Damage.

Mahadevan J, Rudolph J, Jha A, Tay JW, Dragavon J, Grumstrup EM, Luger K.

Biophys J. 2019 Jun 4;116(11):2224-2233. doi: 10.1016/j.bpj.2019.04.032. Epub 2019 May 3.

PMID:
31109734
9.

Nucleosome structure and dynamics are coming of age.

Zhou K, Gaullier G, Luger K.

Nat Struct Mol Biol. 2019 Jan;26(1):3-13. doi: 10.1038/s41594-018-0166-x. Epub 2018 Dec 10. Review.

PMID:
30532059
10.

The histone chaperone FACT modulates nucleosome structure by tethering its components.

Wang T, Liu Y, Edwards G, Krzizike D, Scherman H, Luger K.

Life Sci Alliance. 2018 Jul 10;1(4):e201800107. doi: 10.26508/lsa.201800107. eCollection 2018 Aug.

11.

Single and double box HMGB proteins differentially destabilize nucleosomes.

McCauley MJ, Huo R, Becker N, Holte MN, Muthurajan UM, Rouzina I, Luger K, Maher LJ 3rd, Israeloff NE, Williams MC.

Nucleic Acids Res. 2019 Jan 25;47(2):666-678. doi: 10.1093/nar/gky1119.

12.

Mechanistic insights into histone deposition and nucleosome assembly by the chromatin assembly factor-1.

Sauer PV, Gu Y, Liu WH, Mattiroli F, Panne D, Luger K, Churchill ME.

Nucleic Acids Res. 2018 Nov 2;46(19):9907-9917. doi: 10.1093/nar/gky823. Review.

13.

Poly(ADP-ribose) polymerase 1 searches DNA via a 'monkey bar' mechanism.

Rudolph J, Mahadevan J, Dyer P, Luger K.

Elife. 2018 Aug 8;7. pii: e37818. doi: 10.7554/eLife.37818.

14.

Archaeal DNA on the histone merry-go-round.

Bhattacharyya S, Mattiroli F, Luger K.

FEBS J. 2018 Sep;285(17):3168-3174. doi: 10.1111/febs.14495. Epub 2018 Jun 15. Review.

15.

FRET-based Stoichiometry Measurements of Protein Complexes in vitro.

Mattiroli F, Gu Y, Luger K.

Bio Protoc. 2018 Feb 5;7(3). pii: e2713. doi: 10.21769/bioprotoc.2713.

16.

Investigating the Dynamics of Destabilized Nucleosomes Using Methyl-TROSY NMR.

Kitevski-LeBlanc JL, Yuwen T, Dyer PN, Rudolph J, Luger K, Kay LE.

J Am Chem Soc. 2018 Apr 11;140(14):4774-4777. doi: 10.1021/jacs.8b00931. Epub 2018 Mar 28.

PMID:
29589929
17.

Measuring Nucleosome Assembly Activity in vitro with the Nucleosome Assembly and Quantification (NAQ) Assay.

Mattiroli F, Gu Y, Luger K.

Bio Protoc. 2018 Feb 5;8(3). pii: e2714. doi: 10.21769/BioProtoc.2714.

18.

Constitutive centromere-associated network contacts confer differential stability on CENP-A nucleosomes in vitro and in the cell.

Cao S, Zhou K, Zhang Z, Luger K, Straight AF.

Mol Biol Cell. 2018 Mar 15;29(6):751-762. doi: 10.1091/mbc.E17-10-0596. Epub 2018 Jan 17.

19.

The elongation factor Spn1 is a multi-functional chromatin binding protein.

Li S, Almeida AR, Radebaugh CA, Zhang L, Chen X, Huang L, Thurston AK, Kalashnikova AA, Hansen JC, Luger K, Stargell LA.

Nucleic Acids Res. 2018 Mar 16;46(5):2321-2334. doi: 10.1093/nar/gkx1305.

20.

Decoding the centromeric nucleosome through CENP-N.

Pentakota S, Zhou K, Smith C, Maffini S, Petrovic A, Morgan GP, Weir JR, Vetter IR, Musacchio A, Luger K.

Elife. 2017 Dec 27;6. pii: e33442. doi: 10.7554/eLife.33442.

21.

Replication Stress Shapes a Protective Chromatin Environment across Fragile Genomic Regions.

Kim J, Sturgill D, Sebastian R, Khurana S, Tran AD, Edwards GB, Kruswick A, Burkett S, Hosogane EK, Hannon WW, Weyemi U, Bonner WM, Luger K, Oberdoerffer P.

Mol Cell. 2018 Jan 4;69(1):36-47.e7. doi: 10.1016/j.molcel.2017.11.021. Epub 2017 Dec 14.

22.

Yeast CAF-1 assembles histone (H3-H4) 2 tetramers prior to DNA deposition.

Winkler DD, Zhou H, Dar MA, Zhang Z, Luger K.

Nucleic Acids Res. 2017 Sep 19;45(16):9811-9812. doi: 10.1093/nar/gkx657. No abstract available.

23.

Structure of histone-based chromatin in Archaea.

Mattiroli F, Bhattacharyya S, Dyer PN, White AE, Sandman K, Burkhart BW, Byrne KR, Lee T, Ahn NG, Santangelo TJ, Reeve JN, Luger K.

Science. 2017 Aug 11;357(6351):609-612. doi: 10.1126/science.aaj1849.

24.

Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin.

Chassé MH, Muthurajan UM, Clark NJ, Kramer MA, Chakravarthy S, Irving T, Luger K.

Methods Mol Biol. 2017;1608:231-253. doi: 10.1007/978-1-4939-6993-7_16.

25.

The Cac2 subunit is essential for productive histone binding and nucleosome assembly in CAF-1.

Mattiroli F, Gu Y, Balsbaugh JL, Ahn NG, Luger K.

Sci Rep. 2017 Apr 18;7:46274. doi: 10.1038/srep46274.

26.

DNA-mediated association of two histone-bound complexes of yeast Chromatin Assembly Factor-1 (CAF-1) drives tetrasome assembly in the wake of DNA replication.

Mattiroli F, Gu Y, Yadav T, Balsbaugh JL, Harris MR, Findlay ES, Liu Y, Radebaugh CA, Stargell LA, Ahn NG, Whitehouse I, Luger K.

Elife. 2017 Mar 18;6. pii: e22799. doi: 10.7554/eLife.22799.

27.

PARP1 and Sox2: An Unlikely Team of Pioneers to Conquer the Nucleosome.

Gaullier G, Luger K.

Mol Cell. 2017 Feb 16;65(4):581-582. doi: 10.1016/j.molcel.2017.02.001.

28.

In Vitro Chromatin Assembly: Strategies and Quality Control.

Muthurajan U, Mattiroli F, Bergeron S, Zhou K, Gu Y, Chakravarthy S, Dyer P, Irving T, Luger K.

Methods Enzymol. 2016;573:3-41. doi: 10.1016/bs.mie.2016.01.002. Epub 2016 Feb 19.

29.

Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes.

Prasad R, D'Arcy S, Hada A, Luger K, Bartholomew B.

Mol Cell Biol. 2016 Aug 12;36(17):2262-71. doi: 10.1128/MCB.00195-16. Print 2016 Sep 1.

30.

Histone Chaperone Nap1 Is a Major Regulator of Histone H2A-H2B Dynamics at the Inducible GAL Locus.

Chen X, D'Arcy S, Radebaugh CA, Krzizike DD, Giebler HA, Huang L, Nyborg JK, Luger K, Stargell LA.

Mol Cell Biol. 2016 Mar 31;36(8):1287-96. doi: 10.1128/MCB.00835-15. Print 2016 Apr.

31.

A quantitative investigation of linker histone interactions with nucleosomes and chromatin.

White AE, Hieb AR, Luger K.

Sci Rep. 2016 Jan 11;6:19122. doi: 10.1038/srep19122.

32.

Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation.

Klein BJ, Muthurajan UM, Lalonde ME, Gibson MD, Andrews FH, Hepler M, Machida S, Yan K, Kurumizaka H, Poirier MG, Côté J, Luger K, Kutateladze TG.

Nucleic Acids Res. 2016 Jan 8;44(1):472-84. doi: 10.1093/nar/gkv1321. Epub 2015 Nov 30.

33.

The right place at the right time: chaperoning core histone variants.

Mattiroli F, D'Arcy S, Luger K.

EMBO Rep. 2015 Nov;16(11):1454-66. doi: 10.15252/embr.201540840. Epub 2015 Oct 12. Review.

34.

Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.

Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poirier MG, Bartholomew B.

Mol Cell Biol. 2015 Dec;35(23):4083-92. doi: 10.1128/MCB.00441-15. Epub 2015 Sep 28.

35.

Histone core phosphorylation regulates DNA accessibility.

Brehove M, Wang T, North J, Luo Y, Dreher SJ, Shimko JC, Ottesen JJ, Luger K, Poirier MG.

J Biol Chem. 2015 Sep 11;290(37):22612-21. doi: 10.1074/jbc.M115.661363. Epub 2015 Jul 13.

36.

A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.

Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, Besong TM, Birck C, Brautigam CA, Brennerman W, Byron O, Bzowska A, Chaires JB, Chaton CT, Cölfen H, Connaghan KD, Crowley KA, Curth U, Daviter T, Dean WL, Díez AI, Ebel C, Eckert DM, Eisele LE, Eisenstein E, England P, Escalante C, Fagan JA, Fairman R, Finn RM, Fischle W, de la Torre JG, Gor J, Gustafsson H, Hall D, Harding SE, Cifre JG, Herr AB, Howell EE, Isaac RS, Jao SC, Jose D, Kim SJ, Kokona B, Kornblatt JA, Kosek D, Krayukhina E, Krzizike D, Kusznir EA, Kwon H, Larson A, Laue TM, Le Roy A, Leech AP, Lilie H, Luger K, Luque-Ortega JR, Ma J, May CA, Maynard EL, Modrak-Wojcik A, Mok YF, Mücke N, Nagel-Steger L, Narlikar GJ, Noda M, Nourse A, Obsil T, Park CK, Park JK, Pawelek PD, Perdue EE, Perkins SJ, Perugini MA, Peterson CL, Peverelli MG, Piszczek G, Prag G, Prevelige PE, Raynal BD, Rezabkova L, Richter K, Ringel AE, Rosenberg R, Rowe AJ, Rufer AC, Scott DJ, Seravalli JG, Solovyova AS, Song R, Staunton D, Stoddard C, Stott K, Strauss HM, Streicher WW, Sumida JP, Swygert SG, Szczepanowski RH, Tessmer I, Toth RT 4th, Tripathy A, Uchiyama S, Uebel SF, Unzai S, Gruber AV, von Hippel PH, Wandrey C, Wang SH, Weitzel SE, Wielgus-Kutrowska B, Wolberger C, Wolff M, Wright E, Wu YS, Wubben JM, Schuck P.

PLoS One. 2015 May 21;10(5):e0126420. doi: 10.1371/journal.pone.0126420. eCollection 2015.

37.

Putting numbers on chromatin and its interacting partners.

Luger K.

Methods. 2014 Dec;70(2-3):75-6. doi: 10.1016/j.ymeth.2014.12.006. No abstract available.

PMID:
25510866
38.

Automodification switches PARP-1 function from chromatin architectural protein to histone chaperone.

Muthurajan UM, Hepler MR, Hieb AR, Clark NJ, Kramer M, Yao T, Luger K.

Proc Natl Acad Sci U S A. 2014 Sep 2;111(35):12752-7. doi: 10.1073/pnas.1405005111. Epub 2014 Aug 18.

39.

The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis.

Yelagandula R, Stroud H, Holec S, Zhou K, Feng S, Zhong X, Muthurajan UM, Nie X, Kawashima T, Groth M, Luger K, Jacobsen SE, Berger F.

Cell. 2014 Jul 3;158(1):98-109. doi: 10.1016/j.cell.2014.06.006.

40.

RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response.

Groocock LM, Nie M, Prudden J, Moiani D, Wang T, Cheltsov A, Rambo RP, Arvai AS, Hitomi C, Tainer JA, Luger K, Perry JJ, Lazzerini-Denchi E, Boddy MN.

EMBO Rep. 2014 May;15(5):601-8. doi: 10.1002/embr.201338369. Epub 2014 Apr 8.

41.

Scm3 deposits a (Cse4-H4)2 tetramer onto DNA through a Cse4-H4 dimer intermediate.

Dechassa ML, Wyns K, Luger K.

Nucleic Acids Res. 2014 May;42(9):5532-42. doi: 10.1093/nar/gku205. Epub 2014 Mar 12.

42.

Molecular functions of the TLE tetramerization domain in Wnt target gene repression.

Chodaparambil JV, Pate KT, Hepler MR, Tsai BP, Muthurajan UM, Luger K, Waterman ML, Weis WI.

EMBO J. 2014 Apr 1;33(7):719-31. doi: 10.1002/embj.201387188. Epub 2014 Mar 3.

43.

Editorial overview: Nucleic acid movers and shakers.

Luger K, Phillips SE.

Curr Opin Struct Biol. 2014 Feb;24:v-vii. doi: 10.1016/j.sbi.2014.01.013. Epub 2014 Feb 18. No abstract available.

PMID:
24560626
44.

CAL1 is the Drosophila CENP-A assembly factor.

Chen CC, Dechassa ML, Bettini E, Ledoux MB, Belisario C, Heun P, Luger K, Mellone BG.

J Cell Biol. 2014 Feb 3;204(3):313-29. doi: 10.1083/jcb.201305036. Epub 2014 Jan 27.

45.

Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss.

Sheinin MY, Li M, Soltani M, Luger K, Wang MD.

Nat Commun. 2013;4:2579. doi: 10.1038/ncomms3579.

46.

Assembly of nucleosomal arrays from recombinant core histones and nucleosome positioning DNA.

Rogge RA, Kalashnikova AA, Muthurajan UM, Porter-Goff ME, Luger K, Hansen JC.

J Vis Exp. 2013 Sep 10;(79). doi: 10.3791/50354.

47.

Chaperone Nap1 shields histone surfaces used in a nucleosome and can put H2A-H2B in an unconventional tetrameric form.

D'Arcy S, Martin KW, Panchenko T, Chen X, Bergeron S, Stargell LA, Black BE, Luger K.

Mol Cell. 2013 Sep 12;51(5):662-77. doi: 10.1016/j.molcel.2013.07.015. Epub 2013 Aug 22.

48.

Histone chaperone FACT action during transcription through chromatin by RNA polymerase II.

Hsieh FK, Kulaeva OI, Patel SS, Dyer PN, Luger K, Reinberg D, Studitsky VM.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7654-9. doi: 10.1073/pnas.1222198110. Epub 2013 Apr 22.

49.

Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant.

Earnshaw WC, Allshire RC, Black BE, Bloom K, Brinkley BR, Brown W, Cheeseman IM, Choo KH, Copenhaver GP, Deluca JG, Desai A, Diekmann S, Erhardt S, Fitzgerald-Hayes M, Foltz D, Fukagawa T, Gassmann R, Gerlich DW, Glover DM, Gorbsky GJ, Harrison SC, Heun P, Hirota T, Jansen LE, Karpen G, Kops GJ, Lampson MA, Lens SM, Losada A, Luger K, Maiato H, Maddox PS, Margolis RL, Masumoto H, McAinsh AD, Mellone BG, Meraldi P, Musacchio A, Oegema K, O'Neill RJ, Salmon ED, Scott KC, Straight AF, Stukenberg PT, Sullivan BA, Sullivan KF, Sunkel CE, Swedlow JR, Walczak CE, Warburton PE, Westermann S, Willard HF, Wordeman L, Yanagida M, Yen TJ, Yoda K, Cleveland DW.

Chromosome Res. 2013 Apr;21(2):101-6. doi: 10.1007/s10577-013-9347-y. Epub 2013 Apr 12.

50.

Evidence for monomeric actin function in INO80 chromatin remodeling.

Kapoor P, Chen M, Winkler DD, Luger K, Shen X.

Nat Struct Mol Biol. 2013 Apr;20(4):426-32. doi: 10.1038/nsmb.2529. Epub 2013 Mar 24.

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